BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0085.p         (258 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001241292.1| putative nitrate ABC transporter permease [B...   371   e-101
ref|YP_001204820.1| putative nitrate ABC transporter permease (n...   370   e-100
ref|NP_772373.1| nitrate ABC transporter permease protein [Brady...   364   9e-99
ref|YP_485673.1| nitrate transport permease [Rhodopseudomonas pa...   358   3e-97
ref|NP_947458.1| nitrate transport system permease [Rhodopseudom...   353   2e-95

>ref|YP_001241292.1| putative nitrate ABC transporter permease [Bradyrhizobium sp.
           BTAi1]
 gb|ABQ37386.1| putative nitrate ABC transporter (permease protein) (ntrB-like
           protein) [Bradyrhizobium sp. BTAi1]
          Length = 279

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/204 (87%), Positives = 193/204 (94%)

Query: 21  MTLSLRLRAAIVSIALLAAFLGAWHLATRSSGTTAAMSPEYARLMGLTATQGKSAMPGPL 80
           MT SLRLRAA+VSI LLA FLGAWHLATRS+GT A MSPEYA+LMG+TATQGKSAMPGPL
Sbjct: 1   MTASLRLRAAVVSIVLLAVFLGAWHLATRSTGTAANMSPEYAKLMGMTATQGKSAMPGPL 60

Query: 81  DVGAKLWEHLKRPFYDNGPNDKGLGIQLAYSIGRVGLGYLIAVVVAIPLGFMIGMSPLIS 140
           DVGAKLWEHLKRPFYDNGPNDKGLGIQLA+S+GRV LGYLIAV +AIPLGF+IGMSPL+S
Sbjct: 61  DVGAKLWEHLKRPFYDNGPNDKGLGIQLAFSLGRVMLGYLIAVAIAIPLGFLIGMSPLMS 120

Query: 141 RALDPFIQVLKPISPLAWMPLALYTIKDSSISAIFVIFICSVWPMLLNTAFGVAGVRKEW 200
           +ALDPFIQ++KPISPLAWMPLALYTIKDSS+SAIFVIFICSVWPML+NTAFGVA VRKEW
Sbjct: 121 KALDPFIQIMKPISPLAWMPLALYTIKDSSLSAIFVIFICSVWPMLINTAFGVASVRKEW 180

Query: 201 INVARTLEVGTIRRAFTVILPAGG 224
           INVARTLEVG +RRAFTVILPA  
Sbjct: 181 INVARTLEVGNVRRAFTVILPAAA 204


>ref|YP_001204820.1| putative nitrate ABC transporter permease (ntrB-like protein)
           [Bradyrhizobium sp. ORS 278]
 emb|CAL76583.1| putative nitrate ABC transporter (permease protein) (ntrB-like
           protein) [Bradyrhizobium sp. ORS 278]
          Length = 279

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/204 (87%), Positives = 191/204 (93%)

Query: 21  MTLSLRLRAAIVSIALLAAFLGAWHLATRSSGTTAAMSPEYARLMGLTATQGKSAMPGPL 80
           MT SLRLRAA+VSI LLA FLGAWHLATRS+G  A MSPEYA+LMG+TATQGKSAMPGPL
Sbjct: 1   MTASLRLRAAVVSIVLLAVFLGAWHLATRSTGAAANMSPEYAKLMGMTATQGKSAMPGPL 60

Query: 81  DVGAKLWEHLKRPFYDNGPNDKGLGIQLAYSIGRVGLGYLIAVVVAIPLGFMIGMSPLIS 140
           DVGAKLWEHLKRPFYDNGPNDKGLGIQLA+SIGRV LGYLIAV +AIPLGF+IGMSPL+S
Sbjct: 61  DVGAKLWEHLKRPFYDNGPNDKGLGIQLAFSIGRVMLGYLIAVAIAIPLGFLIGMSPLMS 120

Query: 141 RALDPFIQVLKPISPLAWMPLALYTIKDSSISAIFVIFICSVWPMLLNTAFGVAGVRKEW 200
           +ALDPFIQ+LKPISPLAWMPLALYTIKDSS+SAIFVIFICSVWPML+NTAFGVA VRKEW
Sbjct: 121 KALDPFIQILKPISPLAWMPLALYTIKDSSLSAIFVIFICSVWPMLINTAFGVASVRKEW 180

Query: 201 INVARTLEVGTIRRAFTVILPAGG 224
           INVARTLEVG  RRAFTVILPA  
Sbjct: 181 INVARTLEVGNFRRAFTVILPAAA 204


>ref|NP_772373.1| nitrate ABC transporter permease protein [Bradyrhizobium japonicum
           USDA 110]
 dbj|BAC50998.1| nitrate ABC transporter permease protein [Bradyrhizobium japonicum
           USDA 110]
          Length = 335

 Score =  364 bits (934), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 178/211 (84%), Positives = 193/211 (91%)

Query: 12  GQFSRQRXHMTLSLRLRAAIVSIALLAAFLGAWHLATRSSGTTAAMSPEYARLMGLTATQ 71
           G+   +   M+ +LRLRA +VSI LLAAFLG WHLATRS+   A MSPEYA+LMGLTATQ
Sbjct: 48  GRRVERSCAMSTNLRLRAGLVSIVLLAAFLGIWHLATRSTAPVATMSPEYAKLMGLTATQ 107

Query: 72  GKSAMPGPLDVGAKLWEHLKRPFYDNGPNDKGLGIQLAYSIGRVGLGYLIAVVVAIPLGF 131
           GKSAMPGPLDVGAKLWEH++RPFYDNGPNDKGLGIQLAYSI RVG GYL+AV+VAIPLGF
Sbjct: 108 GKSAMPGPLDVGAKLWEHVRRPFYDNGPNDKGLGIQLAYSIARVGTGYLLAVLVAIPLGF 167

Query: 132 MIGMSPLISRALDPFIQVLKPISPLAWMPLALYTIKDSSISAIFVIFICSVWPMLLNTAF 191
           +IGMSPL+S+ALDPFIQVLKPISPLAWMPLALYTIKDSSISAIFVIFICS+WPMLLNT F
Sbjct: 168 LIGMSPLLSKALDPFIQVLKPISPLAWMPLALYTIKDSSISAIFVIFICSIWPMLLNTVF 227

Query: 192 GVAGVRKEWINVARTLEVGTIRRAFTVILPA 222
           GVA VRKEWINVARTLEVGTIRRAFTVILPA
Sbjct: 228 GVASVRKEWINVARTLEVGTIRRAFTVILPA 258


>ref|YP_485673.1| nitrate transport permease [Rhodopseudomonas palustris HaA2]
 gb|ABD06762.1| nitrate transport permease [Rhodopseudomonas palustris HaA2]
          Length = 279

 Score =  358 bits (920), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 172/202 (85%), Positives = 187/202 (92%)

Query: 21  MTLSLRLRAAIVSIALLAAFLGAWHLATRSSGTTAAMSPEYARLMGLTATQGKSAMPGPL 80
           MT SLR+RAA+VS+ + AAF+GAWHLATR +G  A MSPEYA LMG TATQGKSAMPGPL
Sbjct: 1   MTKSLRIRAAVVSLVIFAAFIGAWHLATRGTGAVAQMSPEYAALMGATATQGKSAMPGPL 60

Query: 81  DVGAKLWEHLKRPFYDNGPNDKGLGIQLAYSIGRVGLGYLIAVVVAIPLGFMIGMSPLIS 140
           DVGAKLWEH++RPFYDNGPNDKGLGIQL YSI RV +GYLIAV VAIPLGF+IGMSPL++
Sbjct: 61  DVGAKLWEHIQRPFYDNGPNDKGLGIQLGYSIARVAIGYLIAVAVAIPLGFLIGMSPLMN 120

Query: 141 RALDPFIQVLKPISPLAWMPLALYTIKDSSISAIFVIFICSVWPMLLNTAFGVAGVRKEW 200
           +ALDPFIQVLKPISPLAWMPLALYTIKDSS+SAIFVIFICSVWPMLLNTAFGVA VRKEW
Sbjct: 121 KALDPFIQVLKPISPLAWMPLALYTIKDSSLSAIFVIFICSVWPMLLNTAFGVASVRKEW 180

Query: 201 INVARTLEVGTIRRAFTVILPA 222
           INVARTLEVG +RRAFTVILPA
Sbjct: 181 INVARTLEVGNVRRAFTVILPA 202


>ref|NP_947458.1| nitrate transport system permease [Rhodopseudomonas palustris
           CGA009]
 emb|CAE27554.1| possible nitrate transport system permease protein
           [Rhodopseudomonas palustris CGA009]
          Length = 279

 Score =  353 bits (905), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 171/202 (84%), Positives = 184/202 (91%)

Query: 21  MTLSLRLRAAIVSIALLAAFLGAWHLATRSSGTTAAMSPEYARLMGLTATQGKSAMPGPL 80
           MT SLRLRAA+VS+ L   F+ AWHLATR SG  A MSPEYA LMG TATQGKSAMPGP 
Sbjct: 1   MTKSLRLRAAVVSLLLFGGFIAAWHLATRGSGEVAKMSPEYAALMGATATQGKSAMPGPF 60

Query: 81  DVGAKLWEHLKRPFYDNGPNDKGLGIQLAYSIGRVGLGYLIAVVVAIPLGFMIGMSPLIS 140
           +VGAKLWEH+KRPFYDNGPNDKGLGIQL YSI RV  GYL+AV+VAIPLGF+IGMSPL++
Sbjct: 61  EVGAKLWEHIKRPFYDNGPNDKGLGIQLGYSIARVMTGYLLAVLVAIPLGFLIGMSPLMN 120

Query: 141 RALDPFIQVLKPISPLAWMPLALYTIKDSSISAIFVIFICSVWPMLLNTAFGVAGVRKEW 200
           +ALDPFIQVLKPISPLAWMPLALYTIKDSS+SAIFVIFICSVWPMLLNTAFGVA VRKEW
Sbjct: 121 KALDPFIQVLKPISPLAWMPLALYTIKDSSLSAIFVIFICSVWPMLLNTAFGVASVRKEW 180

Query: 201 INVARTLEVGTIRRAFTVILPA 222
           INVARTLEVGT+RRAFTVILPA
Sbjct: 181 INVARTLEVGTVRRAFTVILPA 202