BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0081.p         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001206807.1| putative signal peptide [Bradyrhizobium sp. ...   106   2e-21
ref|YP_531818.1| hypothetical protein RPC_1942 [Rhodopseudomonas...   103   6e-21
ref|YP_568262.1| hypothetical protein RPD_1123 [Rhodopseudomonas...    75   4e-12
ref|YP_001239193.1| hypothetical protein BBta_3174 [Bradyrhizobi...    70   1e-10
ref|YP_575632.1| hypothetical protein Nham_0272 [Nitrobacter ham...    67   1e-09

>ref|YP_001206807.1| putative signal peptide [Bradyrhizobium sp. ORS 278]
 emb|CAL78590.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS 278]
          Length = 134

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 82/128 (64%), Gaps = 21/128 (16%)

Query: 9   MTLSTVAPSSAAPLAPARFQHEPVS--------VEHVQYRHWHGG----PRYGYRGGYGY 56
           MTLS V P +AAPL P    + PV         VE VQYRHW GG    P  G R GY Y
Sbjct: 15  MTLSAVTPLAAAPLLP----NTPVPASSAVNSGVEQVQYRHWRGGHDWHPGIGRRHGYQY 70

Query: 57  HGGYYRDRGANGAAIIGGLAAGAIIGGAIAASQAKAN-NDAYCSQRFRTYDPASGTYIAS 115
             GY      NGAA++GGLAAGAIIGGA+A S+A+A+ +  YC+QR+R+YDP SGTY+ +
Sbjct: 71  --GYRHHH--NGAAVLGGLAAGAIIGGAVANSRAQASESQVYCAQRYRSYDPRSGTYLGN 126

Query: 116 GGVRRSCP 123
            G R SCP
Sbjct: 127 DGRRHSCP 134


>ref|YP_531818.1| hypothetical protein RPC_1942 [Rhodopseudomonas palustris BisB18]
 gb|ABD87499.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 128

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/127 (48%), Positives = 80/127 (62%), Gaps = 11/127 (8%)

Query: 1   VAAISAGAMTLSTVAPSSAAPLAPARFQHEPVSVEHVQYRH-WHGGPRYGYRGGYGYHGG 59
             A+  G+++ S + P++AAP  P      P+ ++ VQYRH WH       R G   HGG
Sbjct: 9   TMALILGSLSFS-MQPATAAPTMPQSLVKAPMELQTVQYRHGWHN------RHGGSRHGG 61

Query: 60  YYR--DRGANGAAIIGGLAAGAIIGGAIAASQAK-ANNDAYCSQRFRTYDPASGTYIASG 116
           + R  DR   G  ++GGLAAGA+IGGAIA SQA+ A+ DAYCSQRF++YDP SGTY+   
Sbjct: 62  WRRGYDRRGYGPGVVGGLAAGALIGGAIANSQARGADADAYCSQRFKSYDPGSGTYLGYD 121

Query: 117 GVRRSCP 123
           G R  CP
Sbjct: 122 GQRHPCP 128


>ref|YP_568262.1| hypothetical protein RPD_1123 [Rhodopseudomonas palustris BisB5]
 gb|ABE38361.1| BA14K-like [Rhodopseudomonas palustris BisB5]
          Length = 141

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 46/59 (77%), Gaps = 5/59 (8%)

Query: 70  AIIGGLAAGAIIGGAIAASQAKA-----NNDAYCSQRFRTYDPASGTYIASGGVRRSCP 123
           A IGGLA GAIIGGAIA+SQA+A     +  AYCSQRFR+YDPASGTY+   G+R SCP
Sbjct: 83  AAIGGLAVGAIIGGAIASSQAQAQARGSDAVAYCSQRFRSYDPASGTYLGYDGMRHSCP 141


>ref|YP_001239193.1| hypothetical protein BBta_3174 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35287.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 135

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 83/134 (61%), Gaps = 20/134 (14%)

Query: 1   VAAISAGAMTLSTVAPSSAAPLAPARFQHEPVS-------VEHVQYRHWHGG----PRYG 49
           +AAI  G +TLS V P +AAPL P    + P +       ++ VQYRHW GG    P  G
Sbjct: 9   IAAI--GTITLSAVTPLAAAPLLP----NNPAAPARAVDGLQQVQYRHWRGGHDWHPGLG 62

Query: 50  YRGGYGYHGGYYRDRGANGAAIIGGLAAGAIIGGAIAASQAKANN-DAYCSQRFRTYDPA 108
            R GY Y  GY      +GAA++GGLAAGAIIGGAIA S+A+A+     C+QR+R+YDPA
Sbjct: 63  RRHGYQY--GYRHHHHGSGAAVLGGLAAGAIIGGAIANSRAQASESQVSCAQRYRSYDPA 120

Query: 109 SGTYIASGGVRRSC 122
           SGTY+   G R  C
Sbjct: 121 SGTYLGKDGRRHVC 134


>ref|YP_575632.1| hypothetical protein Nham_0272 [Nitrobacter hamburgensis X14]
 gb|ABE61172.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 138

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 42/55 (76%), Gaps = 2/55 (3%)

Query: 71  IIGGLAAGAIIGGAIAASQAKA--NNDAYCSQRFRTYDPASGTYIASGGVRRSCP 123
           + GGLAAGA+IG AIA SQA+A  ++DAYC +RF++YDP SGTY+   G R  CP
Sbjct: 84  VFGGLAAGAMIGSAIAGSQARAPRSDDAYCFRRFKSYDPRSGTYLGYDGNRHPCP 138