BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0080.p (444 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770245.1| hypothetical protein bll3605 [Bradyrhizobium ja... 519 e-145 ref|YP_002362666.1| hypothetical protein Msil_2374 [Methylocella... 315 1e-83 ref|YP_004110350.1| hypothetical protein Rpdx1_4061 [Rhodopseudo... 215 2e-53 ref|NP_946809.1| hypothetical protein RPA1461 [Rhodopseudomonas ... 205 2e-50 ref|YP_001990650.1| hypothetical protein Rpal_1646 [Rhodopseudom... 204 2e-50 >ref|NP_770245.1| hypothetical protein bll3605 [Bradyrhizobium japonicum USDA 110] dbj|BAC48870.1| bll3605 [Bradyrhizobium japonicum USDA 110] Length = 370 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 257/323 (79%), Positives = 287/323 (88%), Gaps = 1/323 (0%) Query: 123 LAATGWPARANDSAAELSIGGLQFVRTKDVAMASEELRIGLDRVSVRYQFVNQTSKPVAL 182 L ATGWPARANDSAAELSIGGLQFVRT DVAM SE L IGLDR+SVRYQF N T+KPV L Sbjct: 48 LVATGWPARANDSAAELSIGGLQFVRTNDVAMESENLSIGLDRISVRYQFANVTAKPVTL 107 Query: 183 TVAFPLPDIDLSEAENIALPSSDPVNFVAFETRIDGNAVPLTIDQRAMVGNKDVTALLRQ 242 TVAFPLPDIDLSEAENIALPS+DP+NFV FETR+DG+ PLT+DQRAMVGN+DV+ALLR+ Sbjct: 108 TVAFPLPDIDLSEAENIALPSNDPINFVDFETRVDGSPAPLTVDQRAMVGNRDVSALLRE 167 Query: 243 FKLPLLPLGDREIRVADLPATTRTKLIDDGLLMPAGMSDNGRQQYTPGWITKTSAVREQV 302 KLPLLP+G REIR++DLPA TRT+L+DDGL+MPAGMSDNGRQQY PGW+ KTSAVR+QV Sbjct: 168 LKLPLLPIGGREIRLSDLPAATRTRLVDDGLMMPAGMSDNGRQQYAPGWVIKTSAVRQQV 227 Query: 303 FPAARTVTVEHQYRPSVGSSPDTVLRSGLRRSAALGPEVERYRRDYCVTDAFLAELDKRT 362 FP RTVTVEHQYRPSVGSSPDT+LR LRRS+ALG +V RYR++YCV D FLAELDKR Sbjct: 228 FPPMRTVTVEHQYRPSVGSSPDTILRPSLRRSSALGQQVARYRKEYCVQDTFLAELDKRA 287 Query: 363 GDSQANTAKLQERRISYVLKTGANWVGPIRSFTLTIDPGGDDRLVSFCPGRLKPSSAD-N 421 G +Q N+A LQERRISYVLKTGANW GPIRSF LTIDPGG+DRLVSFCPGRLK SSA N Sbjct: 288 GSNQINSANLQERRISYVLKTGANWAGPIRSFKLTIDPGGNDRLVSFCPGRLKASSATGN 347 Query: 422 ARQFTASDFKPDADLKILMIGRF 444 ++TA+DFKPDADLKIL+IG F Sbjct: 348 TLEYTANDFKPDADLKILVIGTF 370 >ref|YP_002362666.1| hypothetical protein Msil_2374 [Methylocella silvestris BL2] gb|ACK51304.1| conserved hypothetical protein [Methylocella silvestris BL2] Length = 345 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 160/317 (50%), Positives = 212/317 (66%), Gaps = 3/317 (0%) Query: 130 ARANDSAAELSIGGLQFVRTKDVAMASEELRIGLDRVSVRYQFVNQTSKPVALTVAFPLP 189 A ANDS+ EL++GG+ F ++ DV+M E L I + V+V Y+F+NQT PV L V FPLP Sbjct: 30 AAANDSSVELAVGGVTFTQSPDVSMEEETLTITPETVTVNYRFLNQTQAPVTLNVGFPLP 89 Query: 190 DIDLSEAEN-IALPSSDPVNFVAFETRIDGNAVPLTIDQRAMVGNKDVTALLRQFKLPLL 248 D+DLS+ ++ A+P +DPVNFV F+TRIDG + + QRA +G +DVTA +R LP+ Sbjct: 90 DLDLSDQDSAYAIPGADPVNFVDFKTRIDGKPIKFDVVQRAKMGARDVTAAVRASGLPIA 149 Query: 249 PLG-DREIRVADLPATTRTKLIDDGLLMPAGMSDNGRQQYTPGWITKTSAVREQVFPAAR 307 LG D + +++ + RT LID GLL+PAG S+ G Y P W T+ R+QVFP Sbjct: 150 LLGADAQQKISAITPEARTALIDAGLLIPAGTSETGEALYGPAWTATTAFTRKQVFPPGS 209 Query: 308 TVTVEHQYRPSVGSSPDTVLRSGLRRSAALGPEVERYRRDYCVTDAFLAELDKRTGDSQA 367 +V VEH+YR S+G+S DT LR LR + +GP VERYR+DYC+ D F LDK G Sbjct: 210 SVNVEHRYRTSLGASQDTALRKALRDAEGMGPTVERYRKDYCLPDDFFRGLDKIAGSEPT 269 Query: 368 NTAKLQERRISYVLKTGANWVGPIRSFTLTIDPGGDDRLVSFCPGRLKPSSADNARQFTA 427 NTA+LQERRI+YVLKTGANW GPI++F L +D G DRLVSFC +K S A + Sbjct: 270 NTARLQERRIAYVLKTGANWSGPIKNFHLIVDKGKPDRLVSFCFDNVKKISP-TAFEAKL 328 Query: 428 SDFKPDADLKILMIGRF 444 +F P DLKIL+IG++ Sbjct: 329 ENFTPAQDLKILLIGKY 345 >ref|YP_004110350.1| hypothetical protein Rpdx1_4061 [Rhodopseudomonas palustris DX-1] gb|ADU45617.1| hypothetical protein Rpdx1_4061 [Rhodopseudomonas palustris DX-1] Length = 338 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 125/327 (38%), Positives = 186/327 (56%), Gaps = 20/327 (6%) Query: 123 LAATGWPARANDSAAELSIGGLQFVRTKDVAMASEELRIGLDRVSVRYQFVNQTSKPVAL 182 L + PARAND+ A L+ GGL+F D+ M SE+L I +R+ VRY+F+N++ + Sbjct: 20 LLTSSLPARANDTTAALTTGGLEFRSNADIEMLSEDLSISRERIDVRYRFLNRSGADQHV 79 Query: 183 TVAFPLPDIDLSEAENIALPSSDPVNFVAFETRIDGNAVPLTIDQRAMVGNKDVTALLRQ 242 TVAFP+P+ID S+A NI +P++D NF+ F T++DG V ++Q+A+VGN DVT L+ Sbjct: 80 TVAFPMPEIDYSDANNIEVPNNDSDNFLNFRTKVDGRDVAAQLEQKALVGNADVTVRLKA 139 Query: 243 FKLPLLPLGD-REIRVADLPATTRTKLIDDGLLMPAGMSDNGR---QQYTPGWITKTSAV 298 +PL P + + LPA T+ +L+ D ++ P D G+ P W + + Sbjct: 140 LGVPLQPRAKATQTALEALPAQTQQQLLKDEIIRPDDY-DVGKGMEHHLAPNWRLRATYH 198 Query: 299 REQVFPAARTVTVEHQYRPSVGSSPDTVLRSGLRRSAALGPEVERYRRDYCVTDAF---L 355 +Q FPA R + VEH Y PSVG S +++G+ + E Y R +C +F + Sbjct: 199 WDQTFPAGRELVVEHSYTPSVGGS----VQTGITGPYSTAEERTNYVRKFCTEPSFVKAV 254 Query: 356 AELDKRTGDSQANTAKLQERRISYVLKTGANWVGPIRSFTLTIDPGGDDRLVSFCP-GRL 414 A + ++ G+ E+R+SYVL TGANW PI F LTID G + LVSFC G + Sbjct: 255 AAMTRKNGNQPP-----PEQRLSYVLTTGANWAKPIGDFHLTIDKGKPNALVSFCETGVV 309 Query: 415 KPSSADNARQFTASDFKPDADLKILMI 441 K + + ++FKP DL IL+I Sbjct: 310 K--TGPTRFEVRKTNFKPSRDLDILII 334 >ref|NP_946809.1| hypothetical protein RPA1461 [Rhodopseudomonas palustris CGA009] emb|CAE26903.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 361 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 120/321 (37%), Positives = 179/321 (55%), Gaps = 20/321 (6%) Query: 129 PARANDSAAELSIGGLQFVRTKDVAMASEELRIGLDRVSVRYQFVNQTSKPVALTVAFPL 188 PARAND+ A L+ GGL+F D+ M SE+L I +R+ VRY+F+N++ +TVAFP+ Sbjct: 49 PARANDTTAALTTGGLEFRTNADIEMLSEDLSISRERIDVRYRFLNRSGADQHVTVAFPM 108 Query: 189 PDIDLSEAENIALPSSDPVNFVAFETRIDGNAVPLTIDQRAMVGNKDVTALLRQFKLPLL 248 P+ID S+A NI +P++D NF+ F T++DG V ++Q+A+V DVTA L+ +PL Sbjct: 109 PEIDFSDASNIDVPNNDSDNFLNFRTKVDGREVTAQLEQKALVDKTDVTARLKALGVPLQ 168 Query: 249 PLGDREIRVAD-LPATTRTKLIDDGLLMPAGMSDNGR---QQYTPGWITKTSAVREQVFP 304 P V + LPA T+ +L+ D ++ P D G+ P W + + +Q FP Sbjct: 169 PRAKATQTVLEALPAQTQQQLLKDEIIRPDDY-DAGKGMEHHLAPSWRLRATYYWDQTFP 227 Query: 305 AARTVTVEHQYRPSVGSSPDTVLRSGLRRSAALGPEVERYRRDYCVTDAF---LAELDKR 361 A + VEH Y PSVG S +++G+ + + Y +C +F +A + ++ Sbjct: 228 AGSELVVEHSYTPSVGGS----VQTGITGQYTTAEQRKNYVHKFCTEPSFVTAVAAMTRK 283 Query: 362 TGDSQANTAKLQERRISYVLKTGANWVGPIRSFTLTIDPGGDDRLVSFCP-GRLKPSSAD 420 G+ E+R+SYVL TGANW PI F LTID G LVS C G +K + Sbjct: 284 NGNQPP-----PEQRVSYVLTTGANWAKPIGDFHLTIDKGKPSSLVSLCETGVVK--TGP 336 Query: 421 NARQFTASDFKPDADLKILMI 441 + ++FKP DL IL+I Sbjct: 337 TRFEVRKTNFKPSRDLDILII 357 >ref|YP_001990650.1| hypothetical protein Rpal_1646 [Rhodopseudomonas palustris TIE-1] gb|ACF00175.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 338 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/321 (37%), Positives = 180/321 (56%), Gaps = 20/321 (6%) Query: 129 PARANDSAAELSIGGLQFVRTKDVAMASEELRIGLDRVSVRYQFVNQTSKPVALTVAFPL 188 PARAND+ A L+ GGL+F D+ M SE+L I +R+ VRY+F+N++ +TVAFP+ Sbjct: 26 PARANDTTAALTTGGLEFRTNADIEMLSEDLSISRERIDVRYRFLNRSGADQHVTVAFPM 85 Query: 189 PDIDLSEAENIALPSSDPVNFVAFETRIDGNAVPLTIDQRAMVGNKDVTALLRQFKLPLL 248 P+ID S+A NI +P++D NF+ F T++DG V ++Q+A+V DVTA L+ +PL Sbjct: 86 PEIDFSDASNIDVPNNDSDNFLNFRTKVDGREVTAQLEQKALVDKTDVTARLKALGVPLQ 145 Query: 249 PLGD-REIRVADLPATTRTKLIDDGLLMPAGMSDNGR---QQYTPGWITKTSAVREQVFP 304 P + + LPA T+ +L+ D ++ P D G+ P W + + +Q F Sbjct: 146 PRAKATQTALEALPAQTQQQLLKDEIIRPDDY-DAGKGMEHHLAPSWRLRATYYWDQTFS 204 Query: 305 AARTVTVEHQYRPSVGSSPDTVLRSGLRRSAALGPEVERYRRDYCVTDAF---LAELDKR 361 A + VEH Y PSVG S +++G+ + + Y R +C +F +A + ++ Sbjct: 205 AGSELVVEHSYTPSVGGS----VQTGITGQYSTAEQRNNYVRKFCTEPSFVTAVAAMTRK 260 Query: 362 TGDSQANTAKLQERRISYVLKTGANWVGPIRSFTLTIDPGGDDRLVSFCP-GRLKPSSAD 420 G+ E+R+SYVL TGANW PI F LTID G + LVS C G +K + Sbjct: 261 NGNQPP-----PEQRVSYVLTTGANWAKPIGDFHLTIDKGKPNSLVSLCETGVVK--TGP 313 Query: 421 NARQFTASDFKPDADLKILMI 441 + ++FKP DL IL+I Sbjct: 314 TRFEVRKTNFKPSRDLDILII 334