BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0077.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770242.1| hypothetical protein blr3602 [Bradyrhizobium ja... 348 5e-94 ref|YP_002498293.1| type VI secretion-associated protein, BMA_A0... 171 8e-41 ref|YP_002362643.1| type VI secretion-associated protein [Methyl... 156 2e-36 ref|YP_002363159.1| type VI secretion-associated protein [Methyl... 150 1e-34 ref|ZP_07778350.1| hypothetical protein PFWH6_5798 [Pseudomonas ... 138 6e-31 >ref|NP_770242.1| hypothetical protein blr3602 [Bradyrhizobium japonicum USDA 110] dbj|BAC48867.1| blr3602 [Bradyrhizobium japonicum USDA 110] Length = 233 Score = 348 bits (892), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 181/231 (78%), Positives = 193/231 (83%) Query: 1 MRCGLFGKIGAKRDFIAIATPRNLLEVWEPWVQAAISASRHQLGAGWQEAFLTAPIWRFW 60 MRCGLFGKIGAKRDFIAIATPR+ LE WEPWVQAA+SASRHQLG GWQ+AFLTAP+WRFW Sbjct: 3 MRCGLFGKIGAKRDFIAIATPRSFLEAWEPWVQAALSASRHQLGPGWQQAFLTAPVWRFW 62 Query: 61 LGAAICGTTVAGAIMPSLDGVGRYYPLTLHAVPDGDAALPPPHIDPQDEWYGQVETFLLS 120 LGAAICGTTVAGAIMPSLDGVGRYYPLTLHAV +LPPP IDPQDEW+GQVE FLLS Sbjct: 63 LGAAICGTTVAGAIMPSLDGVGRYYPLTLHAVTGEAVSLPPPSIDPQDEWFGQVEAFLLS 122 Query: 121 TLDRAATFEQISDALDRLALPRLRTPGTDGPPVVPLSDATLGMVSTVDGFAESFGTLCGA 180 TLDRAATFEQISD LDRLA+PRL+ GPP+ L A +G S VD FA +F LC A Sbjct: 123 TLDRAATFEQISDGLDRLAVPRLQETIASGPPITSLGTAAMGRASAVDAFAGAFAALCAA 182 Query: 181 NPQVYAAASFWWTAGGEGFSPIALCCRGLPDPFRYSTLLTGDVGREVSGTG 231 NPQVYAAASFWWTAGGEGF P+AL CRGLPDPF Y TLLTGD G SG G Sbjct: 183 NPQVYAAASFWWTAGGEGFPPMALSCRGLPDPFHYITLLTGDPGLAASGNG 233 >ref|YP_002498293.1| type VI secretion-associated protein, BMA_A0400 family [Methylobacterium nodulans ORS 2060] gb|ACL57990.1| type VI secretion-associated protein, BMA_A0400 family [Methylobacterium nodulans ORS 2060] Length = 222 Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 100/223 (44%), Positives = 131/223 (58%), Gaps = 9/223 (4%) Query: 1 MRCGLFGKIGAKRDFIAIATPRNLLEVWEPWVQAAISASRHQLGAGWQEAFLTAPIWRFW 60 MR GL+GK+ KRDF+A PR +L EPW+Q ++ASR +L GW+EA+L AP+WRFW Sbjct: 1 MRLGLYGKLPMKRDFVAHDVPRTVLAAVEPWLQGGLAASRARLAEGWREAYLRAPLWRFW 60 Query: 61 LGAAICGTTVAGAIMPSLDGVGRYYPLTLHAVPDGDAALPPPHIDPQDEWYGQVETFLLS 120 LGA ICG V G +MPS+DG+GRY+PL L A+ D ALPPP +D W E LLS Sbjct: 61 LGADICGAPVLGVLMPSVDGIGRYFPLALFAIADRGEALPPPEVDAHAPWCAAAEALLLS 120 Query: 121 TLDRAATFEQISDALDRLALPRLRTPGTDGPPVVPLSDATLGMVSTVDGFAESFGTLCGA 180 LD ATFE ++ L L P D P + L A GF A Sbjct: 121 ALDERATFEALTARLATLPFLGAEPPPEDAPDALALPLAL--------GFPAILDQARRA 172 Query: 181 NPQVYAAA-SFWWTAGGEGFSPIALCCRGLPDPFRYSTLLTGD 222 +P +AAA + +WT GGEGF+P A+ +P P +++LLTG+ Sbjct: 173 DPARHAAALAVFWTQGGEGFAPRAVVAHRMPRPDLFASLLTGE 215 >ref|YP_002362643.1| type VI secretion-associated protein [Methylocella silvestris BL2] gb|ACK51281.1| type VI secretion-associated protein, BMA_A0400 family [Methylocella silvestris BL2] Length = 233 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/225 (43%), Positives = 128/225 (56%), Gaps = 6/225 (2%) Query: 1 MRCGLFGKIGAKRDFIAIATPRNLLEVWEPWVQAAISASRHQLGAGWQEAFLTAPIWRFW 60 MRCGL GKI AK D++A+ P LL EPW+ A+I++SR LG WQ F APIWRFW Sbjct: 2 MRCGLIGKIAAKPDYVALDAPAPLLAAMEPWLHASIASSRLMLGESWQGVFRAAPIWRFW 61 Query: 61 LGAAICGTTVAGAIMPSLDGVGRYYPLTLHAVPDGDAALPPPHIDPQDEWYGQVETFLLS 120 LGA I G V GA+ PS+D GRY+PL A + A+ PP D W+ E LL+ Sbjct: 62 LGAEIAGAPVLGALAPSIDAGGRYFPLIAFASSEAAIAILPPEFADHDAWFKAAEALLLA 121 Query: 121 TLDRAATFEQISDALDRLALPRLRTPGTDGPPVVPLSDATLGMVSTVDG--FAESFGTLC 178 +L + A++E A++RL P PP+ L+ G+ + +D AE F L Sbjct: 122 SLGQGASYEATVAAVERLPAPACAPAVAIRPPLAALAG---GVTAPLDDKPLAEVFSWLR 178 Query: 179 GAN-PQVYAAASFWWTAGGEGFSPIALCCRGLPDPFRYSTLLTGD 222 A+ + Y A SFWWTAGG F P AL LPDP ++ +LTG+ Sbjct: 179 RADWGKSYGARSFWWTAGGVSFRPRALGFYHLPDPSLFAAMLTGE 223 >ref|YP_002363159.1| type VI secretion-associated protein [Methylocella silvestris BL2] gb|ACK51797.1| type VI secretion-associated protein, BMA_A0400 family [Methylocella silvestris BL2] Length = 224 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 119/222 (53%), Gaps = 20/222 (9%) Query: 1 MRCGLFGKIGAKRDFIAIATPRNLLEVWEPWVQAAISASRHQ-LGAGWQEAFLTAPIWRF 59 MRCGL+GK+ +KRDFIA++ PR L +WEPW++ ++ R + W EAF +APIWRF Sbjct: 1 MRCGLYGKLPSKRDFIAVSAPRAFLRLWEPWIEQGLAFGRARGSEEEWAEAFNSAPIWRF 60 Query: 60 WLGAAICGTTVAGAIMPSLDGVGRYYPLTLHAV-PDGDAALPPPHIDPQDEWYGQVETFL 118 WLG A+CG GA+MPS+D +GR YPLTL V D + + PP +DP++ W+ VE L Sbjct: 61 WLGPALCGEAFIGALMPSVDAIGRMYPLTLIGVASDKEEKVDPPDVDPRELWFASVEQLL 120 Query: 119 LSTLDRAATFEQISDALDRLALPRLRTPGTDGPPVVPLSDATLGMVSTVDGFAESFGTLC 178 L LD A F + L RL+T P D ++ + C Sbjct: 121 LDALDPEAPFPTL--------LARLKTLCAS-----PALDENAAALAGAFAQMRAELQDC 167 Query: 179 GANPQVYAAASFWWTAGGEGFSPIALCCRGLPDPFRYSTLLT 220 ASFWWT GG F P+ L G+P ++ +L+ Sbjct: 168 APG-----EASFWWTIGGPAFPPLVLAQIGMPPESAFADMLS 204 >ref|ZP_07778350.1| hypothetical protein PFWH6_5798 [Pseudomonas fluorescens WH6] gb|EFQ60524.1| hypothetical protein PFWH6_5798 [Pseudomonas fluorescens WH6] Length = 217 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 115/222 (51%), Gaps = 12/222 (5%) Query: 4 GLFGKIGAKRDFIAIATPRNLLEVWEPWVQAAISASRHQLGAGWQEAFLTAPIWRFWLGA 63 G +GK+ ++ DF++ A P++ + W+ W+ A + AS+++LG W +L +P+WRF L Sbjct: 5 GFYGKLASRGDFVSRALPQSFIGPWDSWLAAGLLASQNRLGGDWLNVYLVSPLWRFVLAP 64 Query: 64 AICGTTVA-GAIMPSLDGVGRYYPLTLHAVPDGDAALPPPHIDPQDEWYGQVETFLLSTL 122 +CG A G +MPS+D VGRY+PL + A+ D D P + D W+ Q E LLSTL Sbjct: 65 GVCGPDAATGVVMPSIDRVGRYFPLAVVALLDHDTN-PASLVGGSDAWFEQAEELLLSTL 123 Query: 123 DRAATFEQISDALDRLALPRLRTPGTDGPPVVPLSDATLGMVSTVDGFAESFGTLCGANP 182 D ATFE +D LD L P P V A L V+ E G L Sbjct: 124 DAGATFEGFNDGLDSLGPPATE------PRAVDSRFAGLQRVAAT----EPHGRLAALAE 173 Query: 183 QVYAAASFWWTAGGEGFSPIALCCRGLPDPFRYSTLLTGDVG 224 Q A AS WW G + SP L C+GLP ++ L G G Sbjct: 174 QACAGASLWWGRGSQRISPGLLRCQGLPAADDFAQFLLGQEG 215