BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0076.p (1015 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770241.1| hypothetical protein blr3601 [Bradyrhizobium ja... 1863 0.0 ref|YP_002362644.1| type VI secretion protein IcmF [Methylocella... 1031 0.0 ref|YP_002498292.1| type VI secretion protein IcmF [Methylobacte... 937 0.0 ref|YP_002363160.1| type VI secretion protein IcmF [Methylocella... 833 0.0 ref|NP_103726.1| hypothetical protein mlr2360 [Mesorhizobium lot... 786 0.0 >ref|NP_770241.1| hypothetical protein blr3601 [Bradyrhizobium japonicum USDA 110] dbj|BAC48866.1| blr3601 [Bradyrhizobium japonicum USDA 110] Length = 1178 Score = 1863 bits (4827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 936/1015 (92%), Positives = 977/1015 (96%), Gaps = 4/1015 (0%) Query: 1 VLIDTAGRYTTQDSNSKADKESWLSFLDILKKNRSRQPINGVLVAISLEDVLTLPKQELA 60 VLIDTAGRYTTQDSNSKADK+SWL+FLDILKK+RSRQPINGVLVAIS+ED+LTLPKQELA Sbjct: 168 VLIDTAGRYTTQDSNSKADKDSWLAFLDILKKSRSRQPINGVLVAISIEDILTLPKQELA 227 Query: 61 LHADAIRMRLLELHQRLKVSFPVYALFTKADLVAGFTEYFAYLSEAGRRQVWGATFQTAD 120 LHADAIRMRLLELHQRLKVSFPVYALFTKADLVAGFTEYFAYL +AGRRQVWGATFQTAD Sbjct: 228 LHADAIRMRLLELHQRLKVSFPVYALFTKADLVAGFTEYFAYLGDAGRRQVWGATFQTAD 287 Query: 121 KTQNLVGQVPVEFDRLLERLSEETLDRLQDEPTPQHRVQLFGFPAQMARLKPQIHDFLNQ 180 KTQNLVGQ+PVEFDRLLERLSEETLDRLQDEPTPQHRVQLFGFPAQMARLKPQIHDFLN Sbjct: 288 KTQNLVGQIPVEFDRLLERLSEETLDRLQDEPTPQHRVQLFGFPAQMARLKPQIHDFLNL 347 Query: 181 IFEPTRYHVNANLRGFYFTSGTQQGTPIDQLIGSLARTFGAEEVGAGSYSGTGKSYFLAD 240 IFEPTRYHVNANLRGFYFTSGTQQGTPIDQLIGSLARTFGAEEVG+GSYSGTGKS+FLAD Sbjct: 348 IFEPTRYHVNANLRGFYFTSGTQQGTPIDQLIGSLARTFGAEEVGSGSYSGTGKSFFLAD 407 Query: 241 LISKVIIGEADWVSTDRAAVRRALILKTAALSVIGLVAIGLIGAWLTSYKRNSELIEQSL 300 LISKVIIGEADWVSTDRAAVRRALILKTAALS+IGLV+IGLI AWLTSYKRNS+LIEQSL Sbjct: 408 LISKVIIGEADWVSTDRAAVRRALILKTAALSLIGLVSIGLIAAWLTSYKRNSDLIEQSL 467 Query: 301 QADNEYAAAGAPLIKQTLIADHDLDKVLPLLYRLRNAPAGYASRNEPVALSARYGLSQHA 360 QAD+EYAAAGAP+IKQTLIADHDLDKVLPLLYRLRNAPAGY SR E V LSARYGLSQHA Sbjct: 468 QADSEYAAAGAPIIKQTLIADHDLDKVLPLLYRLRNAPAGYGSRGESVPLSARYGLSQHA 527 Query: 361 RLLSPAKAAYHTALERMFRPRLLYRLEEQLNARINEPAFVYEALKVYLMLGGLQSPDREL 420 RLLSP+KAAYHTALERMFRPRLLYRLEEQLNARINEPAFVYEALKVYLM+GGLQSPDREL Sbjct: 528 RLLSPSKAAYHTALERMFRPRLLYRLEEQLNARINEPAFVYEALKVYLMVGGLQSPDREL 587 Query: 421 IRSWMQRDWADNLYPGATNAEGRRLLDENLVAMFDLETEQPPLVELDGRLIKQAQNSLAR 480 IRSWMQRDWADNLYPGATNAEGRRLLDENLVAMFDLETEQ PLVELDGRLIKQAQ+SLAR Sbjct: 588 IRSWMQRDWADNLYPGATNAEGRRLLDENLVAMFDLETEQQPLVELDGRLIKQAQSSLAR 647 Query: 481 LSVSQRAYEFLKSEARGSTAGDWIAGRRGGPDVAVVFETTNGQPLDNVRVPEFFTYNGFN 540 LSVSQRAYEFLKSEAR STAGDWIA R GGPD+ VVFETT GQPLD VRVPEFFTYNGF+ Sbjct: 648 LSVSQRAYEFLKSEARASTAGDWIASRHGGPDMGVVFETTTGQPLDAVRVPEFFTYNGFH 707 Query: 541 QKFIARLPGLSERMKRERWVLGDAGQQSAIDQQYDNLAGDLLSIYSNEFVTTWRTALGNL 600 QKF+ARL GLSERMKRERWVLGDAGQQSAIDQQYDNLAGDLLSIYSN+FVTTWRTALG+L Sbjct: 708 QKFVARLSGLSERMKRERWVLGDAGQQSAIDQQYDNLAGDLLSIYSNDFVTTWRTALGSL 767 Query: 601 RLKKLLADKPKYEVLRALSAPTSPMRQILESVRDETMLTKERPKPASAGTPAAPPAVTTP 660 RLKKLLADKPKYEVLRALSAPTSPMRQILESVRDET+LTKER KPASA +A A P Sbjct: 768 RLKKLLADKPKYEVLRALSAPTSPMRQILESVRDETVLTKERAKPASA---SAAAAAPAP 824 Query: 661 ALFNNAQNGTPGAAIESQFKPYHAVLEGESTRRPIDSTIANLNDIAQNLTLMVENPQLTA 720 ALF NAQ+G PGA IE+QFKPYHA LEGESTRRPIDST+ANLNDIAQNLTL++ENPQLTA Sbjct: 825 ALFTNAQDGPPGAMIEAQFKPYHAALEGESTRRPIDSTVANLNDIAQNLTLIIENPQLTA 884 Query: 721 QATAGLQTQVAALRNNASRMPPPFSDMLRAAAAEFEGSIAASTAGQILQSLRDQVTPVCQ 780 QATA LQTQVAALRNNASRMPPPFSDMLRAAAAEFEGSIAASTAGQILQ+LRDQVTPVCQ Sbjct: 885 QATAALQTQVAALRNNASRMPPPFSDMLRAAAAEFEGSIAASTAGQILQTLRDQVTPVCQ 944 Query: 781 QTVTNRYPFVRGSGQEVPLADFAKLFSPNGIMDKFFTQFLAPYADTSRSEWVWRKESPVG 840 QTVTNRYPF+R S QEVPLADFAKLFSPNG+MDKFFTQ+LAPYADTSRS+WVWRKESPVG Sbjct: 945 QTVTNRYPFIRSSSQEVPLADFAKLFSPNGVMDKFFTQYLAPYADTSRSDWVWRKESPVG 1004 Query: 841 RSFSPDTLKQFQNAAYIRDAFFQTGGGVPAVSFAIRPPAAAGPGITVKTEIGGTTITSPT 900 RSFSPDTLKQFQNAAYIRDAFFQTGGG+PAVSFAIRPP AAGPG+TVKTEIGGTTITSPT Sbjct: 1005 RSFSPDTLKQFQNAAYIRDAFFQTGGGLPAVSFAIRPPGAAGPGVTVKTEIGGTTITSPT 1064 Query: 901 TPGPAPTPSMFGAPQPAPPPPPQSNSPTTVLWPGPSPRTAISVSNETGSPSVLERIGPWS 960 TPGPA T S+FG PQP PPPPPQSNSPTTVLWPGP+PRTAISVSN+TG PSVLERIGPWS Sbjct: 1065 TPGPA-TSSLFGGPQPTPPPPPQSNSPTTVLWPGPAPRTAISVSNDTGPPSVLERIGPWS 1123 Query: 961 LFRMLEAGSLVAKAESASATFIVAGRELNYQISTGSLRNPLNLSVLREFRCPTGI 1015 LFRMLEAGSLV KAE+ASATFIVAGREL+YQISTGSLRNPLNLSVLREFRCPTGI Sbjct: 1124 LFRMLEAGSLVVKAETASATFIVAGRELSYQISTGSLRNPLNLSVLREFRCPTGI 1178 >ref|YP_002362644.1| type VI secretion protein IcmF [Methylocella silvestris BL2] gb|ACK51282.1| type VI secretion protein IcmF [Methylocella silvestris BL2] Length = 1181 Score = 1031 bits (2667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 539/1046 (51%), Positives = 717/1046 (68%), Gaps = 64/1046 (6%) Query: 1 VLIDTAGRYTTQDSNSKADKESWLSFLDILKKNRSRQPINGVLVAISLEDVLTLPKQELA 60 V+IDTAGRYTTQDS+++AD++SWL+FLD+LKKNR RQPINGV+VAI+L D++T + ++ Sbjct: 169 VMIDTAGRYTTQDSDARADQKSWLAFLDLLKKNRPRQPINGVIVAIALSDIMTETQAQIE 228 Query: 61 LHADAIRMRLLELHQRLKVSFPVYALFTKADLVAGFTEYFAYLSEAGRRQVWGATFQTAD 120 HA AIR RL+E++++LKV FPVY LFTKADL++GF E+F L+E R QVWGATFQTAD Sbjct: 229 AHAQAIRSRLIEVNKQLKVDFPVYVLFTKADLISGFREFFGSLNENARAQVWGATFQTAD 288 Query: 121 KTQNLVGQVPVEFDRLLERLSEETLDRLQDEPTPQHRVQLFGFPAQMARLKPQIHDFLNQ 180 K NLVG+VP E+D L+ RL+E T DRLQ+EP P R LFGFPAQ+A LK + +FLN Sbjct: 289 KKLNLVGEVPAEYDSLIARLNEWTTDRLQEEPVPSTRASLFGFPAQVAALKKPVFNFLNL 348 Query: 181 IFEPTRYHVNANLRGFYFTSGTQQGTPIDQLIGSLARTFGAEEVGAGSYSGTGKSYFLAD 240 IFEPTRYH NA LRGFYFTSGTQ+GTPIDQLIG+L+R+FGA EV A +YSG G+SYFL + Sbjct: 349 IFEPTRYHANATLRGFYFTSGTQEGTPIDQLIGALSRSFGAREVAANAYSGRGQSYFLKN 408 Query: 241 LISKVIIGEADWVSTDRAAVRRALILKTAALSVIGLVAIGLIGAWLTSYKRNSELIEQSL 300 L+ K+IIGEA WVSTDRAAV RA ++K AL ++ LV GL AW SY+RNS+LI ++ Sbjct: 409 LVGKLIIGEAAWVSTDRAAVFRARLIKGVALGLLALVCAGLSLAWFGSYQRNSDLIVRTQ 468 Query: 301 QADNEYAAAGAPLIKQTLIADHDLDKVLPLLYRLRNAPAGYASRNEPVALSARYGLSQHA 360 ++ PL + I+D DL K+LP L +LR PAG+ ++ E L+A +GLSQ Sbjct: 469 AGAADFRTVAGPLATEPEISDRDLAKILPPLNKLRFLPAGFETKGETPPLAATFGLSQFD 528 Query: 361 RLLSPAKAAYHTALERMFRPRLLYRLEEQLNARINEPAFVYEALKVYLMLGGLQSPDREL 420 RL S + AY ALER+ RPRL+YRLEEQ+ A +P+F+YEALKVYLMLGGL + DR+L Sbjct: 529 RLQSASTGAYDMALERLLRPRLIYRLEEQMEANRGDPSFLYEALKVYLMLGGLHAVDRDL 588 Query: 421 IRSWMQRDWADNLYPGATNAEGRRLLDENLVAMFDLETEQPPLVELDGRLIKQAQNSLAR 480 + ++++RDW +NLYPG+ NA+GRRLL+ ++ AM D++ + +V L+G L+ +AQN LAR Sbjct: 589 VMNYLRRDWTENLYPGSANADGRRLLEAHVAAMLDMKGD--IIVSLNGPLVSEAQNLLAR 646 Query: 481 LSVSQRAYEFLKSEARGSTAGDWIAGRRGGPDVAVVFETTNGQPLDNVRVPEFFTYNGFN 540 LSVSQ+AYE L+S+A S DW A R+GGPD A+VFE T G LD+++VP F+TY GF Sbjct: 647 LSVSQQAYELLRSQAASSEISDWNAARQGGPDSALVFEATQGAALDSIKVPAFYTYAGFR 706 Query: 541 QKFIARLPGLSERMKRERWVLGDAGQQSAIDQQYDNLAGDLLSIYSNEFVTTWRTALGNL 600 + FI RL G+ E++K +RWVLG AG+Q+A++ QY +L+ DLL+IY +F+ W++ALG L Sbjct: 707 RLFIDRLSGIGEKLKSDRWVLGAAGEQAAVEDQYKSLSDDLLAIYGKDFIAAWQSALGRL 766 Query: 601 RLKKLLADKPKYEVLRALSAPTSPMRQILESVRDETMLTKERPKPASAGTPAAPPAVTTP 660 +LK+LLADKPKY L A SAPTSP++Q++ SVRDET LT+ERP G Sbjct: 767 KLKRLLADKPKYVTLAAASAPTSPIKQLIVSVRDETALTRERP-----GFAKKEGVDPNA 821 Query: 661 ALFNNAQNGTPGAAIESQFKPYHAVLEGESTRRPIDSTIANLNDIAQNLTLMVENPQLTA 720 ALF N PGA IE FK YH ++EGE+ R P+D I+NL +I Q+L LM NP Sbjct: 822 ALFQN--RAVPGADIEQAFKAYHVLVEGEAGRAPVDLIISNLAEIYQSLLLM-GNPAQAP 878 Query: 721 QATAGLQTQVAALRNNASRMPPPFSDMLRAAAAEFEGSIAASTAGQILQSLRDQVTPVCQ 780 AT+ LQTQVAALR NA+R+P PF+ ML+ A + +G + S Q+ ++LRD VT VCQ Sbjct: 879 LATSQLQTQVAALRANANRLPQPFAGMLQTAGTDIDGDLTNSFRSQLNRALRDTVTGVCQ 938 Query: 781 QTVTNRYPFVRGSGQEVPLADFAKLFSPNGIMDKFFTQFLAPYADTSRSEWVWRKESPVG 840 Q V+NRYPF R + +EV L DF +LF P GI+DKFF+ + Y D S+ W +R+++ V Sbjct: 939 QVVSNRYPFAR-TDREVSLVDFGRLFGPQGIIDKFFSTQIQQYVDMSKPVWTFRQDNNVA 997 Query: 841 RSF--SPDTLKQFQNAAYIRDAFFQTGGGVPAVSFAIRPPAAAGPG-------------- 884 R+ S TLK+FQ AA IRD FF TGG +P+++ I PP A P Sbjct: 998 RALASSGATLKEFQRAAQIRDVFFATGGLMPSMTLTITPPPAPLPALPAPPPPAAGAAQA 1057 Query: 885 ------------ITVKTEIGGTTITSPTTPGPAPTPSMFGAPQPAPPPPPQSNSPTTVLW 932 +++K ++ GT I SP +++P W Sbjct: 1058 APAATPAPAAPTVSIKMDMNGTPIISPAG----------------------ASAPVVAQW 1095 Query: 933 PGPSP-RTAISVSNET--GSPSVLERIGPWSLFRMLEAGSLVAKAESASATFIVAGRELN 989 PG S R+AI+V+++ PS +ER GPWSLFR++EAG+ V +S ++IV GREL Sbjct: 1096 PGASTNRSAITVTSDAPGAQPSTIERRGPWSLFRLIEAGAPVPHGDSIVVSYIVGGRELQ 1155 Query: 990 YQISTGSLRNPLNLSVLREFRCPTGI 1015 Y S GS +NP L LREF CP+ + Sbjct: 1156 YTFSAGSTQNPFTLPALREFHCPSDL 1181 >ref|YP_002498292.1| type VI secretion protein IcmF [Methylobacterium nodulans ORS 2060] gb|ACL57989.1| type VI secretion protein IcmF [Methylobacterium nodulans ORS 2060] Length = 1204 Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust. Identities = 512/1064 (48%), Positives = 683/1064 (64%), Gaps = 78/1064 (7%) Query: 1 VLIDTAGRYTTQDSNSKADKESWLSFLDILKKNRSRQPINGVLVAISLEDVLTLPKQELA 60 VLIDTAGRYTTQDS+ + D+ESWL+FLD+LK++R RQPINGVLVAISLED++ P + +A Sbjct: 170 VLIDTAGRYTTQDSDPRGDRESWLAFLDLLKRHRPRQPINGVLVAISLEDLIAGPPEAVA 229 Query: 61 LHADAIRMRLLELHQRLKVSFPVYALFTKADLVAGFTEYFAYLSEAGRRQVWGATFQTAD 120 HA A+R RLLELH+RL V FPVYALFTKADL+AGF E+F +L EAGRR VWG TFQT + Sbjct: 230 AHASAVRKRLLELHERLGVDFPVYALFTKADLIAGFAEFFGHLPEAGRRMVWGHTFQTGE 289 Query: 121 KTQNLVGQVPVEFDRLLERLSEETLDRLQDEPTPQHRVQLFGFPAQMARLKPQIHDFLNQ 180 +T+N+VG V EFD L+ER + DRLQ+EP P RV LFGFP+Q+A LK + DFL Sbjct: 290 RTRNMVGSVAAEFDALVERTNAWLPDRLQEEPNPTSRVVLFGFPSQVASLKDLVVDFLTA 349 Query: 181 IFEPTRYHVNANLRGFYFTSGTQQGTPIDQLIGSLARTFGAEEVGAGSYSGTGKSYFLAD 240 +FEPTRYH A LRGFYF SGTQQGTPID+LIG+L+R+FG+++ + G G+S+FLAD Sbjct: 350 VFEPTRYHAAAALRGFYFVSGTQQGTPIDRLIGALSRSFGSQDAAPDAAPGLGRSFFLAD 409 Query: 241 LISKVIIGEADWVSTDRAAVRRALILKTAALSVIGLVAIGLIGAWLTSYKRNSELIEQSL 300 L+ KV+I EA WVST+RAA+RR L L+ A + + L A +G W TS+ RN L Q+ Sbjct: 410 LLRKVVIAEAGWVSTNRAALRRLLALRAGAYAGLALAAALAVGLWWTSFLRNEALSGQAA 469 Query: 301 QADNEYAAAGAPLIKQTLIADHDLDKVLPLLYRLRNAPAGYASRNEPVALSARYGLSQHA 360 +Y A +++ +++AD + KVLP L LR PAGYASR E + A +GLSQ A Sbjct: 470 AGAAKYRAEAVDVLRDSVVADRNFSKVLPYLNTLRYLPAGYASRGEAGPVLATFGLSQRA 529 Query: 361 RLLSPAKAAYHTALERMFRPRLLYRLEEQLNARINEPAFVYEALKVYLMLGGL-QSP-DR 418 RL S A+ AYH LER+ RPRL+YRLEE + A P +YEALKVYLM+G ++P DR Sbjct: 530 RLGSAAETAYHAGLERLLRPRLIYRLEELIEANRGNPGVLYEALKVYLMIGRRPEAPLDR 589 Query: 419 ELIRSWMQRDWADNLYPGATNAEGRRLLDENLVAMFDLETEQPPLVELDGRLIKQAQNSL 478 +L+ +WM+RDWA+ LY GA A+GR+LL+++LVAM DLE P+V ++ L+++ Q +L Sbjct: 590 DLVLAWMRRDWAEFLYSGAGFAKGRQLLEDHLVAMLDLEDAGEPVVSINQGLVEETQRTL 649 Query: 479 ARLSVSQRAYEFLKSEARGSTAGDWIAGRRGGPDVAVVFETTNGQPLDNVRVPEFFTYNG 538 ARLSV++RAYE LKSEAR S DW GPD A+VFE T LD VRVP F TY+G Sbjct: 650 ARLSVAERAYELLKSEARASGRRDWTLAAAAGPDAALVFEATGRGDLDGVRVPYFLTYDG 709 Query: 539 FNQKFIARLPGLSERMKRERWVLGDAGQQSAIDQQYDNLAGDLLSIYSNEFVTTWRTALG 598 F FI R ++E + R+RWVLG AG++ A QY +L DLL +Y+ +F WR+ LG Sbjct: 710 FFDAFIDRFGDIAEAVGRDRWVLGGAGEEEAYTAQYGSLFADLLKLYARDFAAAWRSTLG 769 Query: 599 NLRLKKLLADKPKYEVLRALSAPTSPMRQILESVRDETMLTKERP--KPASAGTPAA--- 653 L+L+ L AD+P+Y L AL+APTSP++++LESV ET LT+ERP +P + P A Sbjct: 770 RLKLRPLAADRPRYVALTALAAPTSPLKRLLESVGAETRLTRERPAARPGTEADPRATKA 829 Query: 654 ---------------------------------------PPAVTTPALFNNAQNGTPGAA 674 PP PA + ++ PGAA Sbjct: 830 AAVVAGALSAEAERQAAGVLPSRVASTASALGRLALERTPPQAAGPARIDASE--APGAA 887 Query: 675 IESQFKPYHAVLEGESTRRPIDSTIANLNDIAQNLTLMVENPQLTAQATAGLQTQVAALR 734 IE+ F+ +HAVL+GE +R +D+ +ANL+D L ATA L Q LR Sbjct: 888 IEAGFRAFHAVLDGEGGKRAVDALLANLSD----LRAAALEAAAPGGATAPLSAQARNLR 943 Query: 735 NNASRMPPPFSDMLRAAAAEFEGSIAASTAGQILQSLRDQVTPVCQQTVTNRYPFVRGSG 794 + ASR P PF M++ AAAEFEGS+ + + Q L + VT CQ V RYPF R S Sbjct: 944 SLASRFPAPFEAMIQGAAAEFEGSVTGAAVAGLAQGLAETVTRECQAAVAGRYPFAR-SE 1002 Query: 795 QEVPLADFAKLFSPNGIMDKFFTQFLAPYADTSRSEWVWRKESPVGRSFSPDTLKQFQNA 854 +E+PLADFA+LF+P GI+D+FFTQ L + D SR +W WR + V R+FS TL++FQ A Sbjct: 1003 REIPLADFARLFAPGGILDRFFTQNLVSHVDRSRPQWTWRADDQVARAFSLATLREFQRA 1062 Query: 855 AYIRDAFFQTGGGVPAVSFAIRPPAAAGPGITVKTEIGGTTITSPTTPGPAPTPSMFGAP 914 A IRDAFF GG P + A+ P A G K E+ G+T+ + T Sbjct: 1063 AEIRDAFFAAGGTTPGFTLAVTPLALTGDATRAKFELNGSTVEAGTG------------- 1109 Query: 915 QPAPPPPPQSNSPTTVLWPGPS--PRTAISVSNETGSPSV-LERIGPWSLFRMLEAGSLV 971 N+P ++ WPG S R A+SV G+ + +ER G W+L+R+LEAGSL+ Sbjct: 1110 ---------VNAPASLAWPGASGLGRAAVSVEGIFGTNAASVERAGAWALYRLLEAGSLL 1160 Query: 972 AKAESASATFIVAGRELNYQISTGSLRNPLNLSVLREFRCPTGI 1015 + ++ ATF + GR+++Y+++ ++ NPL L LREFRCP+ + Sbjct: 1161 RQGDAVVATFSLGGRDVSYRLAVSAIANPLTLPALREFRCPSSL 1204 >ref|YP_002363160.1| type VI secretion protein IcmF [Methylocella silvestris BL2] gb|ACK51798.1| type VI secretion protein IcmF [Methylocella silvestris BL2] Length = 1148 Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/1026 (45%), Positives = 653/1026 (63%), Gaps = 59/1026 (5%) Query: 1 VLIDTAGRYTTQDSNSKADKESWLSFLDILKKNRSRQPINGVLVAISLEDVLTLPKQELA 60 VLIDTAGRYTTQDS+++AD++SWL+FLD+LKKNR RQPINGVLVAISLED+LTLP +E+A Sbjct: 169 VLIDTAGRYTTQDSDARADQKSWLAFLDLLKKNRPRQPINGVLVAISLEDILTLPAEEVA 228 Query: 61 LHADAIRMRLLELHQRLKVSFPVYALFTKADLVAGFTEYFAYLSEAGRRQVWGATFQTAD 120 HA AIR RL+ELHQRLKV FPVYA+FTKADL+ GF E+F L EAGRRQVWGATF T D Sbjct: 229 AHAAAIRARLIELHQRLKVDFPVYAVFTKADLLIGFMEFFGDLDEAGRRQVWGATFATMD 288 Query: 121 KTQNLVGQVPVEFDRLLERLSEETLDRLQDEPTPQHRVQLFGFPAQMARLKPQIHDFLNQ 180 K+++++ + P EF LL+ LS +RL +E P RV FGFPAQMA L+ + FL+ Sbjct: 289 KSKSMLAEAPFEFKALLDPLSRIAQNRLDEEKDPATRVLAFGFPAQMAALQAPVIGFLDA 348 Query: 181 IFEPTRYHVNANLRGFYFTSGTQQGTPIDQLIGSLARTFGAEEVGAGSYSGTGKSYFLAD 240 IF+P RY + A LRGFYFTSGTQQGTPIDQL+G+LA+ FGAE VG YSG GKS+FL D Sbjct: 349 IFDPARYKIRAALRGFYFTSGTQQGTPIDQLLGALAKGFGAEAVGTPVYSGQGKSFFLTD 408 Query: 241 LISKVIIGEADWVSTDRAAVRRALILKTAALSVIGLVAIGLIGAWLTSYKRNSELIEQSL 300 LI KV+IGEA WVST R I+K AA + + + A LIGAW SY RN + I Q++ Sbjct: 409 LIKKVVIGEAGWVSTGRG----NRIVKMAAFASLIVAAPLLIGAWWVSYARNVDRIGQTV 464 Query: 301 QADNEYAAAGAPLIKQTLIADHDLDKVLPLLYRLRNAPAGYASRNEPVALSARYGLSQHA 360 +A +Y AA + +++D DL K LP L+ LR P GYA ++ +S GL+Q A Sbjct: 465 EAAQKYPAASRGVGDADVVSDRDLAKALPALHALRYLPGGYAD-SDAEQISGGLGLNQTA 523 Query: 361 RLLSPAKAAYHTALERMFRPRLLYRLEEQLNARINEPAFVYEALKVYLMLGGLQSPDREL 420 RL S A +AY LERM RPRL+YRLEEQL A N+PA +++ALKVYLMLGGL++ DR+L Sbjct: 524 RLRSAAASAYGVGLERMLRPRLVYRLEEQLEASANDPANLFDALKVYLMLGGLETVDRQL 583 Query: 421 IRSWMQRDWADNLYPGATNAEGRRLLDENLVAMFDLETEQPPLVELDGRLIKQAQNSLAR 480 + +WMQRDW++ LYPG N+EGR+ L+++L+AM DLET V+L+G L+++AQ +LAR Sbjct: 584 LVNWMQRDWSETLYPGPKNSEGRKELEQHLLAMLDLETGHGAFVQLNGPLVEKAQAALAR 643 Query: 481 LSVSQRAYEFLKSEARGSTAGDWIAGRRGGPDVAVVFETTNGQPLDNVRVPEFFTYNGFN 540 +V+ RA + + A+ S DW A + GG VVFE + ++ + VP F T G+ Sbjct: 644 ETVADRALRIMAARAKASLRPDWSAAKVGGAGALVVFEPS----IEAISVPYFLTRTGY- 698 Query: 541 QKFIARLPGLSERMKRERWVLGDAGQQSAIDQQYDNLAGDLLSIYSNEFVTTWRTALGNL 600 + F+ LP + E M R+RWVLG AG+ I QYD+L L+ Y+ F+ WR A+G L Sbjct: 699 EGFVKALPSVVEEMARDRWVLGAAGETPEISAQYDHLRETLVDAYAKSFIDAWREAIGKL 758 Query: 601 RLKKLLADKPKYEVLRALSAPTSPMRQILESVRDETMLTKERPKPASAGTPAAPPAVTTP 660 +++KL A++P Y +L A S+ TSP ++LES+RDET L+ + P +V Sbjct: 759 KIRKLTAERPSYPLLTAASSVTSPFIRLLESIRDETQLST-----SDGDAPTKSASVEGE 813 Query: 661 ALFNNAQNG-TPGAAIESQFKPYHAVLEGESTRRPIDSTIANLNDIAQNLTLMVENPQLT 719 A+ +G TP IE+ PYH ++EG+ +RPID T++ LN+I NL+ + N T Sbjct: 814 AMAVVGGDGKTPAQMIEAALAPYHKLVEGDPGQRPIDRTLSELNEIRVNLSRLATNNAPT 873 Query: 720 AQATAGLQTQVAALRNNASRMPPPFSDMLRAAAAEFEGSIAASTAGQILQSLRDQVTPVC 779 + +++ V L+ A+ +PPPF+ M+ ++ + S + + LR+QVT C Sbjct: 874 GEIAERIESGVGRLKAAAAALPPPFAGMMEQTGSDILREVTESAVARTVAKLREQVTFTC 933 Query: 780 QQTVTNRYPFVRGSGQEVPLADFAKLFSPNGIMDKFFTQFLAPYADTSRSEWVWRKESPV 839 Q+ + RYPF + + ++V L DFA++F P G++D+FF ++ +ADTS +W WR +SP+ Sbjct: 934 QEKIGGRYPFTKDAERDVELDDFARMFGPKGLIDQFFGTYVLAFADTSGPQWKWRDDSPL 993 Query: 840 GRSFSPDTLKQFQNAAYIRDAFF---QTGGGVPAVSFAIRPPAAAGPGITVKTEIGGTTI 896 + F+P L F+ AA IR AFF ++ PA S+A+ PP +G V+ EI T I Sbjct: 994 AKEFAPSALADFKIAADIRAAFFGADRSDPSAPAFSYAVTPPPVSG----VRLEIDATLI 1049 Query: 897 TSPTTPGPAPTPSMFGAPQPAPPPPPQSNSPTTVLWPGPSP--RTAISVSNETGSPSVLE 954 T TTV WPG + RT +++ + P +L Sbjct: 1050 TG-------------------------GQGATTVQWPGTAENHRTLLTMRSNAARPPMLL 1084 Query: 955 RIGPWSLFRMLEAGSLVAKAESASATFIVAGRELNYQ-IST-----GSLRNPLNLSVLRE 1008 + G WS++R+L+ L A+ ATF + GR+L ++ +ST +R PLN++ LR Sbjct: 1085 QSGVWSVYRLLDTAKL--NADGTQATFSLGGRDLAFRFVSTPANGDAGMR-PLNIAQLRA 1141 Query: 1009 FRCPTG 1014 F CP G Sbjct: 1142 FHCPGG 1147 >ref|NP_103726.1| hypothetical protein mlr2360 [Mesorhizobium loti MAFF303099] dbj|BAB49512.1| mlr2360 [Mesorhizobium loti MAFF303099] Length = 1176 Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/1035 (42%), Positives = 619/1035 (59%), Gaps = 48/1035 (4%) Query: 1 VLIDTAGRYTTQDSNSKADKESWLSFLDILKKNRSRQPINGVLVAISLEDVLTLPKQELA 60 VLIDTAGRYTTQ+S+ + DK SWL+FL +LKKNR RQPINGV++AISL D++ L Q + Sbjct: 164 VLIDTAGRYTTQESDRERDKASWLAFLGLLKKNRVRQPINGVILAISLADLIGLDDQHIE 223 Query: 61 LHADAIRMRLLELHQRLKVSFPVYALFTKADLVAGFTEYFAYLSEAGRRQVWGATFQTAD 120 H IR RL ELH+ LK+ FPVY LFTKADLV+GF +YF EA RR+VWGATFQTAD Sbjct: 224 AHVTEIRSRLRELHETLKIQFPVYLLFTKADLVSGFMDYFGQFDEARRRKVWGATFQTAD 283 Query: 121 KTQNLVGQVPVEFDRLLERLSEETLDRLQDEPTPQHRVQLFGFPAQMARLKPQIHDFLNQ 180 +T+N+ G+ P EFD L +RL++E DRLQ+E P R+ +FGFPAQ L+ +I F+ Sbjct: 284 RTRNMAGEAPAEFDGLAKRLADEIADRLQEEADPVARIAIFGFPAQFGALRNRIAHFIAS 343 Query: 181 IFEPTRYHVNANLRGFYFTSGTQQGTPIDQLIGSLARTFGAEEVGAGSYSGTGKSYFLAD 240 +F+ +R VN +LRG YF+SGTQ+GTP DQ++G++ R+FG+ +SGTGKS+FL D Sbjct: 344 LFDASRSQVNVSLRGLYFSSGTQEGTPFDQVLGAIGRSFGS--TSQAHFSGTGKSFFLHD 401 Query: 241 LISKVIIGEADWVSTDRAAVRRALILKTAALSVIGLVAIGLIGAWLTSYKRNSELIEQSL 300 L++ VI E+ WVS DRAA RRA + + L+ I L A +G S+ N LI + Sbjct: 402 LLTNVIFPESGWVSFDRAAERRARLARFGGLAAIALAASAALGVLGLSFFANKSLITSTR 461 Query: 301 QADNEYAAAGAPLIKQTLIADHDLDKVLPLLYRLRNAPAGYASRNEPVALSARYGLSQHA 360 QA +Y + L+K T + D DL+ V+ L +LRN PAG+ + ++ + +GLSQ Sbjct: 462 QAMAQYRDSADSLLKSTTVTDVDLENVIGPLDQLRNLPAGFENGDQAKPIEETFGLSQRE 521 Query: 361 RLLSPAKAAYHTALERMFRPRLLYRLEEQLNARINEPAFVYEALKVYLMLGGLQSP--DR 418 RLLS ++ AY ALER FR RLL + E + A++ +P +YE LK+YLMLGG ++P D Sbjct: 522 RLLSASRTAYRQALERTFRSRLLVQAERTIQAKMADPIALYEPLKIYLMLGG-KAPKVDD 580 Query: 419 ELIRSWMQRDWADNLYPGATNAEGRRLLDENLVAMFDLETEQPPLVELDGRLIKQAQNSL 478 ELI SWM++DW +N YPG N EGR L+++L AM L+ P+ EL+ LI+ AQ SL Sbjct: 581 ELIVSWMRQDWEENRYPGENNREGRAQLEKHLRAMLALDDAYDPVFELNQPLIEAAQRSL 640 Query: 479 ARLSVSQRAYEFLKSEARGSTAGDWIAGRRGGPDVAVVFETTNGQPLDNVRVPEFFTYNG 538 R+S++ RA +KS + D + GP+ ++FE +G L ++ VP +T G Sbjct: 641 GRMSLADRASALIKSAVYAARLEDLSVAAKAGPEAQLLFERMDGSDLADLNVPGLYTRAG 700 Query: 539 FNQKFIARLPGLSERMKRERWVLGDAGQQSAIDQQYDNLAGDLLSIYSNEFVTTWRTALG 598 FN+ F+ +L +++ + ++WVLG G+Q IDQ L +L+ Y EF + W L Sbjct: 701 FNRFFLPQLSRIAQMLVNDQWVLGGGGEQGGIDQDLPKLGPELIDRYGKEFSSAWNRVLD 760 Query: 599 NLRLKKLLADKPKYEVLRALSAPTSPMRQILESVRDETMLTKE-----------RPKPAS 647 L+ K LL D+P+Y L AL+AP SP+ Q+ ++ DET LTK+ + PAS Sbjct: 761 QLKFKALLKDRPQYLALSALAAPDSPLDQLFTAIADETALTKQNTTADGESNAAQEDPAS 820 Query: 648 A-------GTPAAPPAVTTPALFNNAQNGTPGAAIESQFKPYHAVLEGESTRRPIDSTIA 700 G A + A +A GA++E+QF+P+ A++ G S RRP+D+ Sbjct: 821 MAKGLARIGLQIAGGKSQSRAGLGSAVAQNAGASVEAQFRPFQALVSGVSGRRPLDALTR 880 Query: 701 NLNDIAQNLTLMVENPQLTAQATAGLQTQVAALRNNASRMPPPFSDMLRAAAAEFEGSIA 760 N DI Q+L L + P T + A LQ Q++ LR NASR+P P + M+ AAA EFEG++A Sbjct: 881 NFRDIFQSLKLSADVPSQTERVNANLQLQISTLRANASRLPKPLARMVNAAADEFEGNVA 940 Query: 761 ASTAGQILQSLRDQVTPVCQQTVTNRYPFVRGSGQEVPLADFAKLFSPNGIMDKFFTQFL 820 ++ + Q+L VT C++ V RYPF +++ +ADFAKLF+P G+MD+FF Q L Sbjct: 941 EASVANLNQNLDQTVTRACEEAVNGRYPFASDGTEDISIADFAKLFAPGGLMDRFFAQNL 1000 Query: 821 APYADTSRSEWVWRKESPVGRSFSPDTLKQFQNAAYIRDAFFQTGGGVPAVSFAIRPPAA 880 AP D + EW WR++ R + TLK FQ+AA IR AFF +GG VP+VS I P + Sbjct: 1001 APLIDMTGQEWTWRQDVRSSRDLAKSTLKSFQSAAEIRSAFFPSGGSVPSVSITITPFSL 1060 Query: 881 AGPGITVKTEIGGTTITSPTTPGPAPTPSMFGAPQPAPPPPPQSNSPTTVLWPGPSPRTA 940 I G T+ S T N+P+TV WP + + Sbjct: 1061 NSDADNAVLNIDGQTVQSSQT----------------------GNAPSTVTWPNGTASGS 1098 Query: 941 ISVS---NETGSPSVLERIGPWSLFRMLEAGSLVAKAESASATFIVAGRELNYQISTGSL 997 S+S G S L+ GPW+L R+L+ ++ A + A F++ GR++ Y + TG Sbjct: 1099 ASLSLMPEMPGRDSALKFEGPWALKRLLDKATITANGANTEARFVIGGRDVAYTMQTGPG 1158 Query: 998 RNPLNLSVLREFRCP 1012 +P L L F CP Sbjct: 1159 TSPFLLPALSGFSCP 1173