BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0075.p         (154 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770241.1| hypothetical protein blr3601 [Bradyrhizobium ja...   274   2e-72
ref|YP_002362644.1| type VI secretion protein IcmF [Methylocella...   169   1e-40
ref|YP_002363160.1| type VI secretion protein IcmF [Methylocella...   123   7e-27
ref|NP_103726.1| hypothetical protein mlr2360 [Mesorhizobium lot...   119   1e-25
ref|ZP_01546337.1| hypothetical protein SIAM614_12798 [Stappia a...   112   2e-23

>ref|NP_770241.1| hypothetical protein blr3601 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48866.1| blr3601 [Bradyrhizobium japonicum USDA 110]
          Length = 1178

 Score =  274 bits (701), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/150 (88%), Positives = 140/150 (93%)

Query: 1   MLAKDILRIVLYGVGLSSLGAVIYLAGPFVAFGDWHPLENHIVRQIAILLLGAAAAGVTG 60
           MLAKD+LRIVLYGVGLSSLGAVIY AGPF+AFGDW PLENHIVRQIAILLL    AG+ G
Sbjct: 1   MLAKDVLRIVLYGVGLSSLGAVIYFAGPFIAFGDWRPLENHIVRQIAILLLTTIVAGIVG 60

Query: 61  LHFFKRRKNAKEIADGVSGADQAVSDEPVLKERMKDALATLKTASGNKSGYLYDLPWYVI 120
           L+ FKRRK AKEIADG++GADQ VSDEPVLKERMKDALATLKTASGNKSG+LYDLPWYVI
Sbjct: 61  LNLFKRRKGAKEIADGIAGADQPVSDEPVLKERMKDALATLKTASGNKSGFLYDLPWYVI 120

Query: 121 IGPPGAGKTTALVNSGLKFPLARGATPAAI 150
           IGPPGAGKTTALVNSGLKFPLARGATPAAI
Sbjct: 121 IGPPGAGKTTALVNSGLKFPLARGATPAAI 150


>ref|YP_002362644.1| type VI secretion protein IcmF [Methylocella silvestris BL2]
 gb|ACK51282.1| type VI secretion protein IcmF [Methylocella silvestris BL2]
          Length = 1181

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/151 (62%), Positives = 115/151 (76%), Gaps = 2/151 (1%)

Query: 2   LAKDILRIVLYGVGLSSLGAVIYLAGPFVAFGDWHPLENHIVRQIAILLLGAAAAGVTGL 61
           + K+I+RI+ YGVGLSS+ AV+YLAGP +  G   PLEN IVR I I++L AAAAG+ G 
Sbjct: 1   MNKEIIRIIAYGVGLSSIAAVVYLAGPMIEIGGVRPLENSIVRDIIIVVLVAAAAGLAGF 60

Query: 62  HFFKRRKNAKEIADGVSGADQAVSDEPVLKERMKDALATLKTAS--GNKSGYLYDLPWYV 119
            F++R+KNA EI  G++      SD  VL ERMKDALATLK AS    K  YLY+LPWY+
Sbjct: 61  TFWRRKKNAAEIEKGIAEGGAPDSDAEVLGERMKDALATLKNASKGATKGAYLYELPWYL 120

Query: 120 IIGPPGAGKTTALVNSGLKFPLARGATPAAI 150
           +IGPPGAGKTTAL NSGLKFPL+RGATPAA+
Sbjct: 121 LIGPPGAGKTTALANSGLKFPLSRGATPAAV 151


>ref|YP_002363160.1| type VI secretion protein IcmF [Methylocella silvestris BL2]
 gb|ACK51798.1| type VI secretion protein IcmF [Methylocella silvestris BL2]
          Length = 1148

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 95/152 (62%), Gaps = 3/152 (1%)

Query: 1   MLAKDILRIVLYGVGLSSLGAVIYLAGPFVAFGDWHPLENHIVRQIAILLLGAAAAGVTG 60
           M  K  LR+ +  +G  +LGA+I+LA P +     +PLE  + R   I ++ A   G   
Sbjct: 1   MNRKFWLRLSISVIGALALGALIWLAAPLIPLRGAYPLEEPLPRAALIAVIFALIGGAGL 60

Query: 61  LHFFKRRKNAKEIADGVS--GADQAVSDEPVLKERMKDALATLKTASGNKSGYLYDLPWY 118
             F +RRK A  IA  ++  G     SD PVL ERMK+AL+ L+   G ++ YLYDLPWY
Sbjct: 61  YRFNRRRKGAARIAQSLTAEGHPGDDSDAPVLAERMKEALSVLR-GRGGRANYLYDLPWY 119

Query: 119 VIIGPPGAGKTTALVNSGLKFPLARGATPAAI 150
           V+IGPPG+GKTTAL+NSGL+FPLA G  P A+
Sbjct: 120 VLIGPPGSGKTTALINSGLEFPLAGGVKPGAV 151


>ref|NP_103726.1| hypothetical protein mlr2360 [Mesorhizobium loti MAFF303099]
 dbj|BAB49512.1| mlr2360 [Mesorhizobium loti MAFF303099]
          Length = 1176

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 88/137 (64%), Gaps = 2/137 (1%)

Query: 6   ILRIVLYGVGLSSLGAVIYLAGPFVAFGDWHPLENHIVRQIAILLLGAAAAGVTGLHFFK 65
           +LRI    + L+   A ++ AGP + F D  PL +  +R + I L  A  A   G+ F++
Sbjct: 4   MLRIFSV-LALAGFSAAVWYAGPLLRFADTRPLGSVWLRALIIGLTVAVLALFYGIGFWQ 62

Query: 66  RRKNAKEIADGVSGADQAVSDEPVLKERMKDALATLKTASGNKSGYLYDLPWYVIIGPPG 125
           RRK  K +   +  +D+   D  VL+ RM +A+ATLK  SG K  +LYD+PWY+IIGPPG
Sbjct: 63  RRKAQKALEAAIVRSDERNDDAQVLEARMSEAIATLKRTSG-KRNFLYDIPWYIIIGPPG 121

Query: 126 AGKTTALVNSGLKFPLA 142
           AGKTTALVNSGLKFPLA
Sbjct: 122 AGKTTALVNSGLKFPLA 138


>ref|ZP_01546337.1| hypothetical protein SIAM614_12798 [Stappia aggregata IAM 12614]
 gb|EAV44893.1| hypothetical protein SIAM614_12798 [Stappia aggregata IAM 12614]
          Length = 1217

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 81/130 (62%)

Query: 14  VGLSSLGAVIYLAGPFVAFGDWHPLENHIVRQIAILLLGAAAAGVTGLHFFKRRKNAKEI 73
           +G+ +L  +I+  GPF++     P E   +R   I L+     G TG   +KR K  +E+
Sbjct: 12  IGILALIGLIWFGGPFLSIAGVRPFEPLWIRLSLIALVLLTIGGWTGYRIYKRTKANREL 71

Query: 74  ADGVSGADQAVSDEPVLKERMKDALATLKTASGNKSGYLYDLPWYVIIGPPGAGKTTALV 133
              +     + +D  ++ ERMKDAL TLK +SGN   YLYDLPWY++IGPPGAGKTTAL+
Sbjct: 72  EREILQPKASDADLQIMSERMKDALKTLKNSSGNARTYLYDLPWYLMIGPPGAGKTTALM 131

Query: 134 NSGLKFPLAR 143
           +SGLKF  +R
Sbjct: 132 HSGLKFAGSR 141