BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0062.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770228.1| hypothetical protein bll3588 [Bradyrhizobium ja... 612 e-173 ref|YP_002498281.1| type VI secretion protein [Methylobacterium ... 394 e-108 ref|YP_002362657.1| type VI secretion protein [Methylocella silv... 366 3e-99 ref|ZP_01546324.1| hypothetical protein SIAM614_12733 [Stappia a... 263 3e-68 ref|YP_935404.1| putative cytoplasmic protein SciB [Azoarcus sp.... 234 2e-59 >ref|NP_770228.1| hypothetical protein bll3588 [Bradyrhizobium japonicum USDA 110] dbj|BAC48853.1| bll3588 [Bradyrhizobium japonicum USDA 110] Length = 354 Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust. Identities = 298/343 (86%), Positives = 316/343 (92%) Query: 1 VTLIDQMKAEPWRFDFFQTLRQLERCNPDRPRIGDSAARRDEFVDLGQTPYLEFPASNLS 60 +TLIDQMKAEPWRFDFF TLRQ ER NPDRPRIGDSAARRDE++DLGQ PYLEFPASNL+ Sbjct: 12 MTLIDQMKAEPWRFDFFHTLRQFERANPDRPRIGDSAARRDEYIDLGQVPYLEFPASNLA 71 Query: 61 SVDDRDGRLRILVKFLGLLGPQGALPLATTDESVGWQLMRDDAFPRFLDLLNGRFLQLFF 120 +VDD+ RLRILVKFLGLLGPQGALPLATTDES+ W LMRDDAFPRFLDLLNGRFLQLFF Sbjct: 72 AVDDQGARLRILVKFLGLLGPQGALPLATTDESLSWWLMRDDAFPRFLDLLNGRFLQLFF 131 Query: 121 RAWADARPIAQHDRPSDDRFIAYVGSFAGLGSDVFANRDTVPDMAKLSFAGLVSPRAKSA 180 RAWADARPIAQHDRP+DDRFIAYVGSFAGLGSDVFA+RD VPDMAKLSFAGLV+PRAK A Sbjct: 132 RAWADARPIAQHDRPADDRFIAYVGSFAGLGSDVFADRDAVPDMAKLSFAGLVAPRAKCA 191 Query: 181 SRLARLLQGLFDVRVEIDEFVGTWLPFDPSHCSRLGGTHARLGHDALLGSRVFSVEDKIR 240 SRL R LQGLFDV+VEIDEFVGTWL FDPSHCSRLGGTHARLG DALLGSRVFSVEDKIR Sbjct: 192 SRLTRFLQGLFDVKVEIDEFVGTWLSFDPSHCSRLGGTHARLGQDALLGSRVFSVEDKIR 251 Query: 241 VRVFVKDFAQYEQFLPTEAPNLSEPLADAVYFYIGDELEWEVELAIPAGAVVPMKLGHSG 300 VRVFV+ FAQYEQFLPTE PNLS PLADAV+FYIGDELEWEVELAIPAG VVP++LG SG Sbjct: 252 VRVFVRTFAQYEQFLPTETPNLSAPLADAVFFYIGDELEWEVELAIPAGEVVPVRLGQSG 311 Query: 301 RLGWTSWVSPNWASTEEYRRDARFHLAERLRARRNAATGTPPV 343 RLGWT+WVSPNWASTEEYRRDARF L ERLRARR+A + Sbjct: 312 RLGWTTWVSPNWASTEEYRRDARFQLGERLRARRSATANAAAI 354 >ref|YP_002498281.1| type VI secretion protein [Methylobacterium nodulans ORS 2060] gb|ACL57978.1| type VI secretion protein, VC_A0111 family [Methylobacterium nodulans ORS 2060] Length = 385 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 209/328 (63%), Positives = 249/328 (75%), Gaps = 6/328 (1%) Query: 7 MKAEPWRFDFFQTLRQLERCNPDRPRIGDSAARRDEFVDLGQTPYLEFPASNLSSVD-DR 65 + A P D F LR+LER +PDRPRIGDSAARR+E+V LG+ P+L+FPAS LS VD D Sbjct: 45 LAARPGAHDLFALLRRLEREHPDRPRIGDSAARREEYVALGEDPFLDFPASTLSRVDRDA 104 Query: 66 DGRLRILVKFLGLLGPQGALPLATTDESVGWQLMRDDAFPRFLDLLNGRFLQLFFRAWAD 125 DGRLR+ V+FLGLLGPQGALPLA TDE+ GW L DDAFPRFLD+LN RFLQLFFRAWAD Sbjct: 105 DGRLRLFVRFLGLLGPQGALPLAVTDEAHGWHLAHDDAFPRFLDILNNRFLQLFFRAWAD 164 Query: 126 ARPIAQHDRPSDDRFIAYVGSFAGLGSDVFANRDTVPDMAKLSFAGLVSPRAKSASRLAR 185 ARP AQ DRP DRF+AYVGS GLGS + NR VPD AKL+FAGL++P+AKS +RL Sbjct: 165 ARPAAQADRPDQDRFVAYVGSAIGLGSAPYRNRGAVPDSAKLAFAGLLAPKAKSPARLRA 224 Query: 186 LLQGLFDVRVEIDEFVGTWLPFDPSHCSRLGGTHARLGHDALLGSRVFSVEDKIRVRVFV 245 + GLF V VEID FVGT L F+P SRLG HARLG D LLGSRVFSVED+ R+R+ Sbjct: 225 AVAGLFGVAVEIDSFVGTQLAFEPGDRSRLGRAHARLGADLLLGSRVFSVEDRFRIRIIA 284 Query: 246 KDFAQYEQFLPT-EAPNLSEPLADAVYFYIGDELEWEVELAIPAGAVVPMKLGHSGRLGW 304 D AQYE+FLPT E+ L LAD V+F++G+EL+WE+ELA+PA AV P +LG GRLG+ Sbjct: 285 ADLAQYERFLPTGESCAL---LADLVFFHLGEELDWELELALPAHAVRPARLGRGGRLGY 341 Query: 305 TSWVS-PNWASTEEYRRDARFHLAERLR 331 T+W++ P RRDAR + AER+R Sbjct: 342 TAWITRPPDPDAPGLRRDARLNPAERIR 369 >ref|YP_002362657.1| type VI secretion protein [Methylocella silvestris BL2] gb|ACK51295.1| type VI secretion protein, VC_A0111 family [Methylocella silvestris BL2] Length = 349 Score = 366 bits (939), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 179/305 (58%), Positives = 230/305 (75%), Gaps = 4/305 (1%) Query: 4 IDQMKAEPWRFDFFQTLRQLERCNPDRPRIGDSAARRDEFVDLGQTPYLEFPASNLSSVD 63 ++ ++EPWRFDFF +R LER NP PRIGD+ A R+E+ LGQ PY++FPAS LS + Sbjct: 3 LEGAESEPWRFDFFAAMRALERANPTLPRIGDAGALREEYARLGQDPYMDFPASTLSKFE 62 Query: 64 DRDGRLRILVKFLGLLGPQGALPLATTDESVGWQLMRDDAFPRFLDLLNGRFLQLFFRAW 123 R+ RIL KFLG LGPQGALPLATT+E+ W L +DD+FPRFLD++N RFLQLFFRAW Sbjct: 63 TRETHTRILTKFLGFLGPQGALPLATTEEAYNWFLAQDDSFPRFLDIINHRFLQLFFRAW 122 Query: 124 ADARPIAQHDRPSDDRFIAYVGSFAGLGSDVFANRDTVPDMAKLSFAGLVSPRAKSASRL 183 AD+RP+AQHDRP+DDRF YVG+ AGLGS ++ + D+V D AKL FAG++ P+AKSASRL Sbjct: 123 ADSRPVAQHDRPNDDRFETYVGASAGLGSPIYRDLDSVDDRAKLCFAGVLGPQAKSASRL 182 Query: 184 ARLLQGLFDVRVEIDEFVGTWLPFDPSHCSRLGGTHARLGHDALLGSRVFSVEDKIRVRV 243 + G F V EI+EFVG+ L +P+ S+LG A LG D LLG+ +SV+DK+R+R+ Sbjct: 183 RAFICGHFHVEAEIEEFVGSRLELEPADQSKLGS--ASLGVDMLLGASFYSVQDKVRIRI 240 Query: 244 FVKDFAQYEQFLPTEAPNLSEPLADAVYFYIGDELEWEVELAIPAGAVVPMKLGHSGRLG 303 +V D Y +FLP + EPLAD V+FY+G+EL+W++ELAIPA A P+KLG SG LG Sbjct: 241 YVPDMKAYRRFLPDG--DFCEPLADIVFFYVGEELDWDLELAIPAKAAEPVKLGRSGDLG 298 Query: 304 WTSWV 308 WTSWV Sbjct: 299 WTSWV 303 >ref|ZP_01546324.1| hypothetical protein SIAM614_12733 [Stappia aggregata IAM 12614] gb|EAV44880.1| hypothetical protein SIAM614_12733 [Stappia aggregata IAM 12614] Length = 538 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 150/334 (44%), Positives = 204/334 (61%), Gaps = 26/334 (7%) Query: 3 LIDQMKAEPWRFDFFQTLRQLE-RCNPDR---------------PRIGDSAARRDEFVDL 46 L ++++ P D LR LE + P R PRIG S ++ V Sbjct: 170 LAERIQTHPGGHDLLAVLRMLEGQTAPGRSEPGAKPKNAEEPAPPRIGKSRRMMEDIVRF 229 Query: 47 GQTPYLEFPASNLS-SVDDRDGRLRILVKFLGLLGPQGALPLATTDESVGWQLMRDDAFP 105 GQ P EF S + + D DG L +L +FLG+LGPQGALP A TDE++ L DD+FP Sbjct: 230 GQDPSSEFATSTIERATRDGDGGLVLLERFLGMLGPQGALPSAYTDEAIMRGLTGDDSFP 289 Query: 106 RFLDLLNGRFLQLFFRAWADARPIAQHDRPSDDRFIAYVGSFAGLGSDVFANRDTVPDMA 165 RFLD+ N RF+QLF+RAWADARPI QHDRP DDRF+AY+GS G+G+ ++ + D + D Sbjct: 290 RFLDIFNNRFVQLFYRAWADARPIVQHDRPDDDRFLAYLGSAIGIGTPIYRDLDRIDDRL 349 Query: 166 KLSFAGLVSPRAKSASRLARLLQGLFDVRVEIDEFVGTWLPFDPSH----CSRLGGTHAR 221 KL +AGL+SP+ KSA+RL L+ G+FDV+VEID+ VGTWL D G + Sbjct: 350 KLLYAGLMSPKTKSAARLKALITGVFDVKVEIDQCVGTWLHLDKDDQLKLGGFGPGGGGK 409 Query: 222 LGHDALLGSRVFSVEDKIRVRVFVKDFAQYEQFLPTE--APNL-SEPLADAVYFYIGDEL 278 LG D ++GS+V+SV DKIR+R+F + +Y +FLP PN +E L D + FY+G E+ Sbjct: 410 LGADTIVGSKVYSVSDKIRIRIFTRTLEEYRKFLPPTRVKPNPWTEKLFDLIDFYLGLEV 469 Query: 279 EWEVELAIP--AGAVVPMKLGHSGRLGWTSWVSP 310 E+E+ELA+P + V M +S LG W+ P Sbjct: 470 EYEIELALPKRCASAVRMDATNSATLGHIGWLKP 503 >ref|YP_935404.1| putative cytoplasmic protein SciB [Azoarcus sp. BH72] emb|CAL96518.1| putative cytoplasmic protein, sciB [Azoarcus sp. BH72] Length = 347 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 144/346 (41%), Positives = 195/346 (56%), Gaps = 19/346 (5%) Query: 1 VTLIDQMKAEPWRFDFFQTLRQLERCNPDRPRIGDSAARRDEFVDLGQTPYLEFPASNLS 60 V+L D + EPW FDF Q +R++E P+RPR G + +DE V LGQ P L F + LS Sbjct: 8 VSLFDALAREPWAFDFLQAMRRIECAFPERPRWGSALRPQDEPVRLGQAPSLSFAPATLS 67 Query: 61 SVDDRDGRL-RILVKFLGLLGPQGALPLATTDESVGWQLMR-DDAFPRFLDLLNGRFLQL 118 + +G R+ V+F GLLGP G LPL T+ + +L D+ F RFLDL++ RFL L Sbjct: 68 AFKTVEGAPPRLEVRFFGLLGPNGPLPLHLTEYAHHRELHHGDETFARFLDLIHHRFLAL 127 Query: 119 FFRAWADARPIAQHDRPSDDRFIAYVGSFAGLGSDVFANRDTVPDMAKLSFAGLVSPRAK 178 F+RAWA A+P DRP DRF Y+GS G+G RD+VPD A+ AGL++ + + Sbjct: 128 FYRAWAQAQPTVSLDRPRQDRFSTYIGSLIGIGQPALQQRDSVPDNARRFQAGLLARQVR 187 Query: 179 SASRLARLLQGLFDVRVEIDEFVGTWLPFDPSHCSRLGGTHARLGHDALLGSRVFSVEDK 238 + L +L G F++ V ++++VG W+ SRLG ARLG D +LG RV+ + K Sbjct: 188 NGEGLQAVLTGYFELPVAVEQYVGHWMTLRERDHSRLG--RARLGSDTVLGRRVWDRQSK 245 Query: 239 IRVRVFVKDFAQYEQFLPTEAPNLSEPLADAVYFYIGDELEWEVELAIPAGAVVPMKLGH 298 R+++ QYE FLP + LAD V FY G EL W+ L + V P++L Sbjct: 246 FRLQIGPLTLVQYEAFLP--GGSALPRLADWVRFYTGGELSWDARLQLQRDQVPPLRLAR 303 Query: 299 SGRLGWTSWVSPNWASTEEYRRDARFHL--AERLRARRNAATGTPP 342 RLGWTSW+ T RDA + AERL AR TPP Sbjct: 304 GARLGWTSWL-----GTRRGNRDADELVLDAERLVAR------TPP 338