BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0057.p         (292 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770223.1| hypothetical protein bll3583 [Bradyrhizobium ja...   476   e-132
gb|AAA26600.1| BBXM [Staphylococcus xylosus]                           37   4.3  
gb|AAA26599.1| BBM3XM [Staphylococcus xylosus]                         37   4.5  
ref|ZP_05990924.1| hemagglutinin secretion protein FhaC [Mannhei...    37   4.6  
ref|ZP_05988472.1| hemagglutinin secretion protein FhaC [Mannhei...    37   4.9  

>ref|NP_770223.1| hypothetical protein bll3583 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48848.1| bll3583 [Bradyrhizobium japonicum USDA 110]
          Length = 254

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/254 (88%), Positives = 240/254 (94%)

Query: 39  VRLYDEKPYIRRQLEKYGVAAATSTLDGVTFLPKDWEDLIKTLRIAKTSDGFDAFAEGKS 98
           +RLYDEKPYIR QLEKYGVAAAT+TLDGVTFLPKDWE+LIK LRIAKT+DGFDAFAEG+S
Sbjct: 1   MRLYDEKPYIRHQLEKYGVAAATTTLDGVTFLPKDWEELIKKLRIAKTTDGFDAFAEGQS 60

Query: 99  PEKPSHWALDLSMAATIGKGFREIWRPKLSDRPLSTRDLPGRHGFGLGRGRGQWSDDYSA 158
           PEK SHWALDLSMAATIGKGFREIWRPKLSD+PLSTRDLPGRHGFGLGR RGQWSD YS+
Sbjct: 61  PEKASHWALDLSMAATIGKGFREIWRPKLSDKPLSTRDLPGRHGFGLGRDRGQWSDAYSS 120

Query: 159 QFGKDPAPQDITSLHFAVAPDRVNVHIDETGFVFEGADGALTVGPNFGHHAVNELFWKSN 218
           QFGKDP PQDITSLHFAVAPDRVNVHIDETGFVFEG DGALTVGPNF HHA NELFWKSN
Sbjct: 121 QFGKDPQPQDITSLHFAVAPDRVNVHIDETGFVFEGVDGALTVGPNFVHHAGNELFWKSN 180

Query: 219 PHLPRWAIDHIDLILPNSANDFSRFGVSVDLYQRKDLRVTVTGSCGIFGGFECSGTLSVS 278
            H+P+WA +HIDLILPNSANDFSR G+SVD+YQRKDLRVTVTGSCGIFGGFECSGT+S+S
Sbjct: 181 KHIPQWAAEHIDLILPNSANDFSRVGISVDMYQRKDLRVTVTGSCGIFGGFECSGTVSIS 240

Query: 279 GTHDLLGSKPKGAR 292
           GTHDLLGSK KG R
Sbjct: 241 GTHDLLGSKSKGRR 254


>gb|AAA26600.1| BBXM [Staphylococcus xylosus]
          Length = 492

 Score = 36.6 bits (83), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 39  VRLYDEKPYIRRQLEKYGVA-------AATSTLDGVTFLPKDWEDLIKTLRIAKTSDGFD 91
           + L + K    R+L+KYGV+           T++GV  L     +  K  RI++ +DG  
Sbjct: 112 IELAEAKVLANRELDKYGVSDYHKNLINNAKTVEGVKDLQAQVVESAKKARISEATDGLS 171

Query: 92  AFAEGKSPEKPSHWALDLSMAATIGKGFREIWRPKLSD 129
            F + ++P + +  +++L+ A  +    RE+ +  +SD
Sbjct: 172 DFLKSQTPAEDTVKSIELAEAKVLAN--RELDKYGVSD 207


>gb|AAA26599.1| BBM3XM [Staphylococcus xylosus]
          Length = 573

 Score = 36.6 bits (83), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 39  VRLYDEKPYIRRQLEKYGVA-------AATSTLDGVTFLPKDWEDLIKTLRIAKTSDGFD 91
           + L + K    R+L+KYGV+           T++GV  L     +  K  RI++ +DG  
Sbjct: 112 IELAEAKVLANRELDKYGVSDYHKNLINNAKTVEGVKDLQAQVVESAKKARISEATDGLS 171

Query: 92  AFAEGKSPEKPSHWALDLSMAATIGKGFREIWRPKLSD 129
            F + ++P + +  +++L+ A  +    RE+ +  +SD
Sbjct: 172 DFLKSQTPAEDTVKSIELAEAKVLAN--RELDKYGVSD 207


>ref|ZP_05990924.1| hemagglutinin secretion protein FhaC [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gb|EEY11138.1| hemagglutinin secretion protein FhaC [Mannheimia haemolytica
           serotype A2 str. OVINE]
          Length = 598

 Score = 36.6 bits (83), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 16/87 (18%)

Query: 143 FGLGRGRGQWSDDYSAQFGKDP-APQDITSLHFAVAPDRVNVHIDETGFVFEGADGALTV 201
           F  G+   QW    +AQ+ K P  PQD     F++             +   G DG LT+
Sbjct: 464 FFWGKQPWQWQSSLNAQWNKTPLVPQD----RFSIGGR----------YTIRGFDGELTL 509

Query: 202 GPNFGHHAVNELFWKSNP-HLPRWAID 227
               G +  NEL W+ NP H   WA+D
Sbjct: 510 SGERGWNWRNELSWQFNPSHAFYWAVD 536


>ref|ZP_05988472.1| hemagglutinin secretion protein FhaC [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gb|EEY13566.1| hemagglutinin secretion protein FhaC [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 598

 Score = 36.6 bits (83), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 16/87 (18%)

Query: 143 FGLGRGRGQWSDDYSAQFGKDP-APQDITSLHFAVAPDRVNVHIDETGFVFEGADGALTV 201
           F  G+   QW    +AQ+ K P  PQD     F++             +   G DG LT+
Sbjct: 464 FFWGKQPWQWQSSLNAQWNKTPLVPQD----RFSIGGR----------YTIRGFDGELTL 509

Query: 202 GPNFGHHAVNELFWKSNP-HLPRWAID 227
               G +  NEL W+ NP H   WA+D
Sbjct: 510 SGERGWNWRNELSWQFNPSHAFYWAVD 536