BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0043.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770208.1| ABC transporter permease protein [Bradyrhizobiu... 626 e-177 ref|YP_001862446.1| binding-protein-dependent transport systems ... 537 e-151 ref|YP_003609761.1| binding-protein-dependent transporters inner... 535 e-150 ref|YP_004232409.1| binding-protein-dependent transport systems ... 534 e-150 ref|YP_001889353.1| binding-protein-dependent transport systems ... 531 e-149 >ref|NP_770208.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48833.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 325 Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust. Identities = 311/325 (95%), Positives = 320/325 (98%) Query: 1 MTAAVAKSVLARSSAHSIVEASPRTKAFAGALVILYALITILPLVWIVATAFKSQSDAIA 60 MTAA+AKSVLA+S+AHSIVEASPR+KA AG LVILYA+ITILPL+WIVATAFKSQSDAIA Sbjct: 1 MTAALAKSVLAKSTAHSIVEASPRSKAVAGGLVILYAVITILPLLWIVATAFKSQSDAIA 60 Query: 61 YPPKVIFEPTLEGYVNLFTVRTRQTPDFIAKLPPPETWYDKLVRKHDMVIAGPSKVVPRF 120 YPPKV+FEPTLEGYVNLFTVRTRQTPDFIAKLPPPETWYD LVR+ DMV AGPSKVVPRF Sbjct: 61 YPPKVLFEPTLEGYVNLFTVRTRQTPDFIAKLPPPETWYDTLVRQRDMVSAGPSKVVPRF 120 Query: 121 VNSLIIGFGSTFLAVFLGTLAAYAFSRFRIPLADDLLFFILSTRMMPPVAVAIPIYLMYR 180 VNSLIIGFGSTFLAVFLGTLAAYAFSRFRIPLADDLLFFILSTRMMPPVAVAIPIYLMYR Sbjct: 121 VNSLIIGFGSTFLAVFLGTLAAYAFSRFRIPLADDLLFFILSTRMMPPVAVAIPIYLMYR 180 Query: 181 QLNLTDTRLGMILLYTAVNVSLAVWLLKGFIDEIPREYEEAALVDGYTRLQALRKVVLPQ 240 QLNLTDTRLGMILLYTAVNVSLAVWLLKGFIDEIPREYEEAALVDGYTRLQALRKVVLPQ Sbjct: 181 QLNLTDTRLGMILLYTAVNVSLAVWLLKGFIDEIPREYEEAALVDGYTRLQALRKVVLPQ 240 Query: 241 AVTGIAATAIFCLIFSWNEYAFAVLLTSGEAQTMPPFIPFIIGEGGQDWPAVAAATTLFV 300 AVTGIAATAIFCLIFSWNEYAFAVLLTSGEAQTMPPFIPFIIGEGGQDWPAVAAATTLFV Sbjct: 241 AVTGIAATAIFCLIFSWNEYAFAVLLTSGEAQTMPPFIPFIIGEGGQDWPAVAAATTLFV 300 Query: 301 VPIVMFTVLLRKHLLRGITFGAVRK 325 VPIV+FTVLLRKHLLRGITFGAVRK Sbjct: 301 VPIVLFTVLLRKHLLRGITFGAVRK 325 >ref|YP_001862446.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] gb|ACC75400.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] Length = 317 Score = 537 bits (1384), Expect = e-151, Method: Compositional matrix adjust. Identities = 258/310 (83%), Positives = 287/310 (92%) Query: 16 HSIVEASPRTKAFAGALVILYALITILPLVWIVATAFKSQSDAIAYPPKVIFEPTLEGYV 75 S+V ASPR K FA +VI YALI LP+VWI+ T+FK+Q DAIAYPP V+F P++EGYV Sbjct: 8 QSVVAASPRCKTFAAVVVIAYALIATLPIVWIILTSFKTQEDAIAYPPVVVFHPSMEGYV 67 Query: 76 NLFTVRTRQTPDFIAKLPPPETWYDKLVRKHDMVIAGPSKVVPRFVNSLIIGFGSTFLAV 135 NLFT+R+RQTP+FIA LPP +TWYD+ VRK +MVIAGPSKV+PRFVNSL+IGFGSTFLAV Sbjct: 68 NLFTIRSRQTPEFIASLPPAQTWYDRDVRKRNMVIAGPSKVLPRFVNSLVIGFGSTFLAV 127 Query: 136 FLGTLAAYAFSRFRIPLADDLLFFILSTRMMPPVAVAIPIYLMYRQLNLTDTRLGMILLY 195 FLGTLAAYAFSRF+IPLADDLLFFILSTRMMPP+AVAIPIYLMYR L L D+ LGMI+LY Sbjct: 128 FLGTLAAYAFSRFKIPLADDLLFFILSTRMMPPIAVAIPIYLMYRALGLADSYLGMIVLY 187 Query: 196 TAVNVSLAVWLLKGFIDEIPREYEEAALVDGYTRLQALRKVVLPQAVTGIAATAIFCLIF 255 TAVNVSLAVWLLKGFIDEIPREYEEAALVDGYTRLQA KVVLPQA+TGIAATAIFCLIF Sbjct: 188 TAVNVSLAVWLLKGFIDEIPREYEEAALVDGYTRLQAFIKVVLPQAITGIAATAIFCLIF 247 Query: 256 SWNEYAFAVLLTSGEAQTMPPFIPFIIGEGGQDWPAVAAATTLFVVPIVMFTVLLRKHLL 315 +WNEYAFA+LLTSG+AQTMPPFIPFIIGEGGQDWPAVAAATTLFV+PI++FTV+LRKHLL Sbjct: 248 AWNEYAFALLLTSGDAQTMPPFIPFIIGEGGQDWPAVAAATTLFVLPILIFTVVLRKHLL 307 Query: 316 RGITFGAVRK 325 RGITFGAVRK Sbjct: 308 RGITFGAVRK 317 >ref|YP_003609761.1| binding-protein-dependent transporters inner membrane component [Burkholderia sp. CCGE1002] gb|ADG20250.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1002] Length = 317 Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust. Identities = 255/310 (82%), Positives = 289/310 (93%) Query: 16 HSIVEASPRTKAFAGALVILYALITILPLVWIVATAFKSQSDAIAYPPKVIFEPTLEGYV 75 S+V ASPR+K FA +VI YALI LP+VWI+ T+FK+Q DA+AYPP V+F P++EGYV Sbjct: 8 QSVVAASPRSKTFAAFIVIAYALIAALPIVWIILTSFKTQEDAVAYPPVVVFHPSMEGYV 67 Query: 76 NLFTVRTRQTPDFIAKLPPPETWYDKLVRKHDMVIAGPSKVVPRFVNSLIIGFGSTFLAV 135 NLFT+R+RQTP+FIA LPP ++WYD+ VRK +MVIAGPSKV+PRFVNSL+IGFGSTFLAV Sbjct: 68 NLFTIRSRQTPEFIASLPPAQSWYDRDVRKRNMVIAGPSKVLPRFVNSLVIGFGSTFLAV 127 Query: 136 FLGTLAAYAFSRFRIPLADDLLFFILSTRMMPPVAVAIPIYLMYRQLNLTDTRLGMILLY 195 FLGTLAAYAFSRFRIPLADDLLFFILSTRMMPP+AVAIPI+LMYR L L+D+ LGMI+LY Sbjct: 128 FLGTLAAYAFSRFRIPLADDLLFFILSTRMMPPIAVAIPIFLMYRALGLSDSYLGMIVLY 187 Query: 196 TAVNVSLAVWLLKGFIDEIPREYEEAALVDGYTRLQALRKVVLPQAVTGIAATAIFCLIF 255 TAVNVSLAVWLLKGF+DEIPREYEEAALVDGYTRLQA KVVLPQA+TGIAATAIFCLIF Sbjct: 188 TAVNVSLAVWLLKGFMDEIPREYEEAALVDGYTRLQAFVKVVLPQAITGIAATAIFCLIF 247 Query: 256 SWNEYAFAVLLTSGEAQTMPPFIPFIIGEGGQDWPAVAAATTLFVVPIVMFTVLLRKHLL 315 +WNEYAFA+LLTSG+AQTMPPFIPFIIGEGGQDWPAVAAATTLFV+PI++FTV+LRKHLL Sbjct: 248 AWNEYAFALLLTSGDAQTMPPFIPFIIGEGGQDWPAVAAATTLFVLPILIFTVVLRKHLL 307 Query: 316 RGITFGAVRK 325 RGITFGAVRK Sbjct: 308 RGITFGAVRK 317 >ref|YP_004232409.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1001] gb|ADX59349.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1001] Length = 317 Score = 534 bits (1375), Expect = e-150, Method: Compositional matrix adjust. Identities = 255/310 (82%), Positives = 286/310 (92%) Query: 16 HSIVEASPRTKAFAGALVILYALITILPLVWIVATAFKSQSDAIAYPPKVIFEPTLEGYV 75 S+V ASPR++ A +VI YALI LP+VWI+ T+FK+Q DAIAYPP V+F P++EGYV Sbjct: 8 QSVVAASPRSRRLAAVVVIAYALIATLPIVWIIMTSFKTQEDAIAYPPVVVFHPSMEGYV 67 Query: 76 NLFTVRTRQTPDFIAKLPPPETWYDKLVRKHDMVIAGPSKVVPRFVNSLIIGFGSTFLAV 135 NLFT+R+RQTP+FIA LPP ETWYD+ VRK +MVIAGPSKV+PRFVNSL+IGFGSTFLAV Sbjct: 68 NLFTIRSRQTPEFIASLPPAETWYDRDVRKRNMVIAGPSKVLPRFVNSLVIGFGSTFLAV 127 Query: 136 FLGTLAAYAFSRFRIPLADDLLFFILSTRMMPPVAVAIPIYLMYRQLNLTDTRLGMILLY 195 F GTLAAYAFSRF++PLADDLLFFILSTRMMPP+AVAIPIYLMYR L L D+ LGMI+LY Sbjct: 128 FFGTLAAYAFSRFKVPLADDLLFFILSTRMMPPIAVAIPIYLMYRALGLADSYLGMIVLY 187 Query: 196 TAVNVSLAVWLLKGFIDEIPREYEEAALVDGYTRLQALRKVVLPQAVTGIAATAIFCLIF 255 TAVNVSLAVWLLKGFIDEIPREYEEAALVDGYTRLQA KVVLPQA+TGIAATAIFCLIF Sbjct: 188 TAVNVSLAVWLLKGFIDEIPREYEEAALVDGYTRLQAFVKVVLPQAITGIAATAIFCLIF 247 Query: 256 SWNEYAFAVLLTSGEAQTMPPFIPFIIGEGGQDWPAVAAATTLFVVPIVMFTVLLRKHLL 315 +WNEYAFA+LLTSG+AQTMPPFIPFIIGEGGQDWPAVAAATTLFV+PI++FTV+LRKHLL Sbjct: 248 AWNEYAFALLLTSGDAQTMPPFIPFIIGEGGQDWPAVAAATTLFVLPILIFTVVLRKHLL 307 Query: 316 RGITFGAVRK 325 RGITFGAVRK Sbjct: 308 RGITFGAVRK 317 >ref|YP_001889353.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phytofirmans PsJN] gb|ACD19983.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phytofirmans PsJN] Length = 317 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 253/313 (80%), Positives = 289/313 (92%) Query: 13 SSAHSIVEASPRTKAFAGALVILYALITILPLVWIVATAFKSQSDAIAYPPKVIFEPTLE 72 ++ HS+V +SPR K FA A+VI YAL+ LP+VWI T+FK+Q DAIAYPP V+F+P++E Sbjct: 5 ATQHSVVASSPRGKRFAAAVVITYALLATLPMVWIFLTSFKTQEDAIAYPPVVLFQPSME 64 Query: 73 GYVNLFTVRTRQTPDFIAKLPPPETWYDKLVRKHDMVIAGPSKVVPRFVNSLIIGFGSTF 132 GYVNLFT+R+RQTP+FIA LPP TWY++ VRK +MVIAGPSKV+PRF NSL+IGFGSTF Sbjct: 65 GYVNLFTIRSRQTPEFIASLPPARTWYERDVRKRNMVIAGPSKVLPRFANSLVIGFGSTF 124 Query: 133 LAVFLGTLAAYAFSRFRIPLADDLLFFILSTRMMPPVAVAIPIYLMYRQLNLTDTRLGMI 192 LAVFLGTLAAYAFSRF++PLADDLLFFILSTRMMPP+AVAIPIYLMYR L L+D+ +GMI Sbjct: 125 LAVFLGTLAAYAFSRFKVPLADDLLFFILSTRMMPPIAVAIPIYLMYRALGLSDSCVGMI 184 Query: 193 LLYTAVNVSLAVWLLKGFIDEIPREYEEAALVDGYTRLQALRKVVLPQAVTGIAATAIFC 252 +LYTAVNVSLAVWLLKGF+DEIPREYEEAALVDGYTRLQA KVVLPQA+TGIAATAIFC Sbjct: 185 VLYTAVNVSLAVWLLKGFMDEIPREYEEAALVDGYTRLQAFVKVVLPQAITGIAATAIFC 244 Query: 253 LIFSWNEYAFAVLLTSGEAQTMPPFIPFIIGEGGQDWPAVAAATTLFVVPIVMFTVLLRK 312 LIF+WNEYAFA LLTSG+AQTMPPFIPFIIGEGGQDWPAVAAATTLFV+PI++FTV+LRK Sbjct: 245 LIFAWNEYAFASLLTSGDAQTMPPFIPFIIGEGGQDWPAVAAATTLFVLPILIFTVVLRK 304 Query: 313 HLLRGITFGAVRK 325 HLLRGITFGAVRK Sbjct: 305 HLLRGITFGAVRK 317