BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0042.p (324 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770207.1| ABC transporter permease protein [Bradyrhizobiu... 617 e-175 ref|ZP_02882408.1| binding-protein-dependent transport systems i... 501 e-140 ref|YP_001889354.1| binding-protein-dependent transport systems ... 498 e-139 ref|YP_004232410.1| binding-protein-dependent transport systems ... 498 e-139 ref|YP_003609760.1| binding-protein-dependent transporters inner... 497 e-138 >ref|NP_770207.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48832.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 324 Score = 617 bits (1591), Expect = e-175, Method: Compositional matrix adjust. Identities = 307/324 (94%), Positives = 315/324 (97%) Query: 1 MDKMTTILQPDHATIPGVSEPAESRAARRVHGLSDRTIAWLFVAPTIALLLAINIFPLVW 60 MD+MTTILQPD ATI G+SEPA+SR ARRV GLSDRTIAWLFVAPTIALLLAINIFPLVW Sbjct: 1 MDQMTTILQPDDATIAGMSEPAKSRDARRVRGLSDRTIAWLFVAPTIALLLAINIFPLVW 60 Query: 61 MIRLSFTSLNLSMSYLPLRFVGLDNFSDILNDEDVWFRLQTTAQFVICSVALQVVVGFGL 120 MIRLSFTSLNLSMSYLPLRFVGLDNF+DIL DEDVWFRLQTTAQFVI SVALQVV+G+GL Sbjct: 61 MIRLSFTSLNLSMSYLPLRFVGLDNFTDILTDEDVWFRLQTTAQFVIWSVALQVVIGYGL 120 Query: 121 ALLINRQFRGHSFWTTIILLPMMLSPAVVGNFWTLLLQPQIGPFNYLISLFTGVPPSSFS 180 ALLINRQFRGHSFWTTIILLPMMLSPAVVGNFWTLLLQPQIGPFNY+ISLFTGVPPSSFS Sbjct: 121 ALLINRQFRGHSFWTTIILLPMMLSPAVVGNFWTLLLQPQIGPFNYVISLFTGVPPSSFS 180 Query: 181 MTGQVALAPWTIVLVDTWMWAPYVMLICLAGLRSIPDYIYEAAEVDRASAWRQFWSITLP 240 MTGQV+LA WTIVLVDTWMWAPYVMLICLAGLRSIP YIYEAAEVDRAS WRQFWSITLP Sbjct: 181 MTGQVSLASWTIVLVDTWMWAPYVMLICLAGLRSIPHYIYEAAEVDRASPWRQFWSITLP 240 Query: 241 MTVPFLMLAVLFRAIENFKMFDMVNLLTSGGPGSTTELVSITLKRAAFEKWRTGYSSALA 300 MTVPFLMLAVLFRAIENFKMFDMVNLLTSGGPGSTTELVSITLKRAAFEKWRTGYSSALA Sbjct: 241 MTVPFLMLAVLFRAIENFKMFDMVNLLTSGGPGSTTELVSITLKRAAFEKWRTGYSSALA 300 Query: 301 IILFVTVFGAANIYVKALNKVKQR 324 IILFVTVFGAANIYVKALNKVKQR Sbjct: 301 IILFVTVFGAANIYVKALNKVKQR 324 >ref|ZP_02882408.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] gb|EDT11611.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] Length = 318 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/303 (79%), Positives = 270/303 (89%) Query: 22 AESRAARRVHGLSDRTIAWLFVAPTIALLLAINIFPLVWMIRLSFTSLNLSMSYLPLRFV 81 A +R A+R+ GLSDRTIAWLF+ PTI LLLAINIFPL+W +RLSFT+ +M +P RFV Sbjct: 16 ASTRIAKRLSGLSDRTIAWLFILPTILLLLAINIFPLIWALRLSFTNFKSNMPSVPARFV 75 Query: 82 GLDNFSDILNDEDVWFRLQTTAQFVICSVALQVVVGFGLALLINRQFRGHSFWTTIILLP 141 G+DN+ DIL DED+W+ +Q TA+FV SV L+V++GFGLALLINRQFRGHSFWTT+ILLP Sbjct: 76 GIDNYVDILTDEDIWYAMQVTARFVFWSVGLEVLLGFGLALLINRQFRGHSFWTTLILLP 135 Query: 142 MMLSPAVVGNFWTLLLQPQIGPFNYLISLFTGVPPSSFSMTGQVALAPWTIVLVDTWMWA 201 MMLSPAVVGNFWT LLQPQ G FN ++S FTG+ P+SF M G VALAPWTIV+VDTWMW Sbjct: 136 MMLSPAVVGNFWTFLLQPQTGLFNDIVSFFTGIAPASFQMIGDVALAPWTIVMVDTWMWT 195 Query: 202 PYVMLICLAGLRSIPDYIYEAAEVDRASAWRQFWSITLPMTVPFLMLAVLFRAIENFKMF 261 PYVMLICLAGLRSIPDYIYEAAEVDRA+ WRQFWSITLPMT+PFLMLAVLFR IENFKMF Sbjct: 196 PYVMLICLAGLRSIPDYIYEAAEVDRATPWRQFWSITLPMTMPFLMLAVLFRGIENFKMF 255 Query: 262 DMVNLLTSGGPGSTTELVSITLKRAAFEKWRTGYSSALAIILFVTVFGAANIYVKALNKV 321 DMVNLLTSGGPGS TE VSITLKRAAFEKW+TGYSSALAIILFVTVFGAANIYVKALN++ Sbjct: 256 DMVNLLTSGGPGSVTETVSITLKRAAFEKWQTGYSSALAIILFVTVFGAANIYVKALNRI 315 Query: 322 KQR 324 KQR Sbjct: 316 KQR 318 >ref|YP_001889354.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phytofirmans PsJN] gb|ACD19984.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phytofirmans PsJN] Length = 318 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 240/308 (77%), Positives = 269/308 (87%) Query: 17 GVSEPAESRAARRVHGLSDRTIAWLFVAPTIALLLAINIFPLVWMIRLSFTSLNLSMSYL 76 G+ A +RA R+ GLSDRTIAWLF+ PT+ LLLAINIFPL+W +RLSFT+ +M + Sbjct: 11 GLESRASARARTRLAGLSDRTIAWLFILPTVLLLLAINIFPLIWALRLSFTNFKSNMPSV 70 Query: 77 PLRFVGLDNFSDILNDEDVWFRLQTTAQFVICSVALQVVVGFGLALLINRQFRGHSFWTT 136 P RFVG+DN+ DIL DED+W+ +Q TA+FV SV L+V++GFGLALLINRQFRGHSFWTT Sbjct: 71 PARFVGIDNYVDILTDEDIWYAMQVTARFVFWSVGLEVLLGFGLALLINRQFRGHSFWTT 130 Query: 137 IILLPMMLSPAVVGNFWTLLLQPQIGPFNYLISLFTGVPPSSFSMTGQVALAPWTIVLVD 196 +ILLPMMLSPAVVGNFWT LLQPQ G FN ++ FTG+ P SF M G V+LAPWTIV+VD Sbjct: 131 LILLPMMLSPAVVGNFWTFLLQPQTGLFNDIVGFFTGIAPGSFQMIGDVSLAPWTIVMVD 190 Query: 197 TWMWAPYVMLICLAGLRSIPDYIYEAAEVDRASAWRQFWSITLPMTVPFLMLAVLFRAIE 256 TWMW PYVMLICLAGLRSIPDYIYEAAEVDRA+ WRQFWSITLPMT+PFLMLAVLFR IE Sbjct: 191 TWMWTPYVMLICLAGLRSIPDYIYEAAEVDRATPWRQFWSITLPMTLPFLMLAVLFRGIE 250 Query: 257 NFKMFDMVNLLTSGGPGSTTELVSITLKRAAFEKWRTGYSSALAIILFVTVFGAANIYVK 316 NFKMFDMVNLLTSGGPGS TE VSITLKRAAFEKW+TGYSSALAIILFVTVFGAANIYVK Sbjct: 251 NFKMFDMVNLLTSGGPGSVTETVSITLKRAAFEKWQTGYSSALAIILFVTVFGAANIYVK 310 Query: 317 ALNKVKQR 324 ALN+VKQR Sbjct: 311 ALNRVKQR 318 >ref|YP_004232410.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1001] gb|ADX59350.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1001] Length = 318 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 240/308 (77%), Positives = 269/308 (87%) Query: 17 GVSEPAESRAARRVHGLSDRTIAWLFVAPTIALLLAINIFPLVWMIRLSFTSLNLSMSYL 76 G+ A +RA R+HGLSDRTIAWLF+ PTI LLLAINIFPL+W +RLSFT+ +M + Sbjct: 11 GLQTKARTRAGARLHGLSDRTIAWLFILPTIVLLLAINIFPLIWALRLSFTNFKSNMPSV 70 Query: 77 PLRFVGLDNFSDILNDEDVWFRLQTTAQFVICSVALQVVVGFGLALLINRQFRGHSFWTT 136 P R VG+ N++DIL DED+W+ +Q TA+FV SV L+V++GFGLALLINRQFRGHSFWTT Sbjct: 71 PARNVGISNYTDILTDEDIWYAMQVTARFVFWSVGLEVLLGFGLALLINRQFRGHSFWTT 130 Query: 137 IILLPMMLSPAVVGNFWTLLLQPQIGPFNYLISLFTGVPPSSFSMTGQVALAPWTIVLVD 196 +ILLPMMLSPAVVGNFWT LLQPQ G FN ++S FTG+ P+SF M G V LAPWTIV+VD Sbjct: 131 LILLPMMLSPAVVGNFWTFLLQPQTGLFNDIVSFFTGIAPNSFQMIGDVPLAPWTIVMVD 190 Query: 197 TWMWAPYVMLICLAGLRSIPDYIYEAAEVDRASAWRQFWSITLPMTVPFLMLAVLFRAIE 256 TWMW PYVMLICLAGLRSIPDYIYEAAEVDRAS WRQFWSITLPMT+PFLMLA+LFR IE Sbjct: 191 TWMWTPYVMLICLAGLRSIPDYIYEAAEVDRASPWRQFWSITLPMTLPFLMLAILFRGIE 250 Query: 257 NFKMFDMVNLLTSGGPGSTTELVSITLKRAAFEKWRTGYSSALAIILFVTVFGAANIYVK 316 NFKMFDMVNLLTSGGPGS TE VSITLKRAAFEKW+TGYSSALAIILFV VFGAANIYVK Sbjct: 251 NFKMFDMVNLLTSGGPGSVTETVSITLKRAAFEKWQTGYSSALAIILFVVVFGAANIYVK 310 Query: 317 ALNKVKQR 324 ALN+VKQR Sbjct: 311 ALNRVKQR 318 >ref|YP_003609760.1| binding-protein-dependent transporters inner membrane component [Burkholderia sp. CCGE1002] gb|ADG20249.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1002] Length = 318 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 240/308 (77%), Positives = 270/308 (87%) Query: 17 GVSEPAESRAARRVHGLSDRTIAWLFVAPTIALLLAINIFPLVWMIRLSFTSLNLSMSYL 76 G+ A++RAA R+ GLSDRTIAWLF+ PTI LLLAINIFPL+W +RLSFT+ +M + Sbjct: 11 GLQTQAQTRAAARLRGLSDRTIAWLFILPTIVLLLAINIFPLIWALRLSFTNFKSNMPSV 70 Query: 77 PLRFVGLDNFSDILNDEDVWFRLQTTAQFVICSVALQVVVGFGLALLINRQFRGHSFWTT 136 P R VG+ N++DIL DED+W+ +Q TA+FV SV L+V++GFGLALLINRQFRGHSFWTT Sbjct: 71 PARNVGISNYTDILTDEDIWYAMQVTARFVFWSVGLEVLLGFGLALLINRQFRGHSFWTT 130 Query: 137 IILLPMMLSPAVVGNFWTLLLQPQIGPFNYLISLFTGVPPSSFSMTGQVALAPWTIVLVD 196 +ILLPMMLSPAVVGNFWT LLQPQ G FN ++S FTG+ P+SF M G V LAPWTIV+VD Sbjct: 131 LILLPMMLSPAVVGNFWTFLLQPQTGLFNDIVSFFTGIAPNSFQMIGDVPLAPWTIVMVD 190 Query: 197 TWMWAPYVMLICLAGLRSIPDYIYEAAEVDRASAWRQFWSITLPMTVPFLMLAVLFRAIE 256 TWMW PYVMLICLAGLRSIPDYIYEAAEVDRAS WRQFWSITLPMT+PFLMLA+LFR IE Sbjct: 191 TWMWTPYVMLICLAGLRSIPDYIYEAAEVDRASPWRQFWSITLPMTLPFLMLAILFRGIE 250 Query: 257 NFKMFDMVNLLTSGGPGSTTELVSITLKRAAFEKWRTGYSSALAIILFVTVFGAANIYVK 316 NFKMFDMVNLLTSGGPGS TE VSITLKRAAFEKW+TGYSSALAIILFV VFGAANIYVK Sbjct: 251 NFKMFDMVNLLTSGGPGSVTETVSITLKRAAFEKWQTGYSSALAIILFVVVFGAANIYVK 310 Query: 317 ALNKVKQR 324 ALN+VKQR Sbjct: 311 ALNRVKQR 318