BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0019.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002979062.1| transcriptional regulator, LysR family [Rhiz... 363 1e-98 ref|YP_612317.1| LysR family transcriptional regulator [Ruegeria... 209 3e-52 ref|YP_004682597.1| LysR family transcriptional regulator [Cupri... 185 9e-45 ref|YP_001639150.1| LysR substrate-binding protein [Methylobacte... 184 1e-44 ref|YP_003067895.1| LysR family transcriptional regulator [Methy... 184 2e-44 >ref|YP_002979062.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS60511.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 310 Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 178/307 (57%), Positives = 224/307 (72%), Gaps = 1/307 (0%) Query: 1 MRKLPPLNAVRAFEAAARHESFTAAANELCVTVTAISHQVRQLEAILGHRLFERSGRAVV 60 MRKLPPLN++RAFEAAARH SFTAAA EL VTVTA+SHQ+RQLE ++ +LFERSGRAVV Sbjct: 1 MRKLPPLNSLRAFEAAARHGSFTAAAKELFVTVTAVSHQIRQLEELIDKKLFERSGRAVV 60 Query: 61 LTAEGHALFPMLRDGFDRMASAFAAIRPPADGDAITVSTTRAFAERWLMPRLARFNAAFP 120 LT G A +P LRDGFD++A AFA + + D + VS T+ FAERWLMPRL RF++AFP Sbjct: 61 LTEAGAAFYPRLRDGFDQLAEAFAQVSGEKEADVVAVSMTKVFAERWLMPRLDRFHSAFP 120 Query: 121 SVVVHIDATEEVRTPGTDGVDLAIRYGRADRAGETSVLFSDRYIAVAASTICPPGARLAI 180 V+V++ A+E+V + +DLAIRYG D A + +L D Y+AVAAS+I + I Sbjct: 121 DVIVNVHASEKVVDLRAESIDLAIRYGPVDLAAKPMILLRDVYLAVAASSISNSERQPVI 180 Query: 181 DDVRSRSLLAFRWKNAALDSPAWSAWLAKADHDPGRDFRISWYSEEPLALHAAERGLGPL 240 DD R R LLA++WKN A P WS WLA+ H+ G DF+ISW+SEE LA+HAAERGLGPL Sbjct: 181 DDYRKRPLLAYKWKNPAFPCPTWSTWLAETPHEVGGDFKISWFSEETLAVHAAERGLGPL 240 Query: 241 LCSDALVDEQLRQGTLRRLDGPALAGFAYRLVDAPGAARRKSVTAFIDWLRGEAAAF-RA 299 L S+ LVDE+LR GTLRR++GP L G+AYRL++ P ++KS F DWL+ EA F R Sbjct: 241 LTSNVLVDEKLRDGTLRRIEGPILPGYAYRLIEGPSFGKKKSAVRFADWLKEEAVTFARG 300 Query: 300 APRQVMT 306 P + T Sbjct: 301 IPHPMNT 307 >ref|YP_612317.1| LysR family transcriptional regulator [Ruegeria sp. TM1040] gb|ABF63055.1| transcriptional regulator, LysR family [Ruegeria sp. TM1040] Length = 290 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 131/292 (44%), Positives = 173/292 (59%), Gaps = 9/292 (3%) Query: 1 MRKLPPLNAVRAFEAAARHESFTAAANELCVTVTAISHQVRQLEAILGHRLFERSGRAVV 60 MRKLPPLNA+RAFEA AR SF A +EL VT TAISHQ+R LEA LG +L ER R + Sbjct: 1 MRKLPPLNAIRAFEAVARRLSFADAGDELGVTATAISHQIRHLEAYLGFQLIERRPRQIA 60 Query: 61 LTAEGHALFPMLRDGFDRMASAFAAIRPPADGDAITVSTTRAFAERWLMPRLARFNAAFP 120 LT G LFP L+ FD + AFA + + + V+ T AFAERWL+PRL F P Sbjct: 61 LTPAGQELFPKLQMAFDTLGEAFAMLDKDVEQSLVRVTATYAFAERWLVPRLTGFFEQHP 120 Query: 121 SVVVHIDATEEVRTPGTDGVDLAIRYGRADRAGE-TSVLFSDRYIAVAASTICPPGARLA 179 + V ++ + + D +DLAIRYG A E VLFSDR+I + ++ P A Sbjct: 121 DIRVEVETDDAILDLRADRLDLAIRYGPQTAATEHAEVLFSDRFIPLRLAS--QPEA--- 175 Query: 180 IDDVRSRSLLAFRWKNAALDSPAWSAWLAKADHDPGRDFRISWYSEEPLALHAAERGLGP 239 D++ LL FRW+NA + P W W KA +P R++ +S+E A +A +RGLG Sbjct: 176 --DLQESRLLGFRWRNADMGGPVWEDWF-KAAGEPFPAERMTRFSDESSAFNALDRGLGL 232 Query: 240 LLCSDALVDEQLRQGTLRRLDGPALAGFAYRLVDAPGAARRKSVTAFIDWLR 291 LL S AL DE L+ G +++ GP L GFA+ LV P + ++ V F DW+R Sbjct: 233 LLSSSALADEGLQSGRYQQVPGPELHGFAFYLVRNPLSRNKQGVRVFTDWIR 284 >ref|YP_004682597.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI81365.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 295 Score = 185 bits (469), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 120/296 (40%), Positives = 164/296 (55%), Gaps = 11/296 (3%) Query: 1 MRKLPPLNAVRAFEAAARHESFTAAANELCVTVTAISHQVRQLEAILGHRLFERSGRAVV 60 MRKLPPL+A+R FEAAAR SF AA+EL VT TA+SHQ+R LE LG +LFER R V Sbjct: 1 MRKLPPLSALRTFEAAARRASFKHAADELHVTPTAVSHQIRLLEESLGVKLFERQTRKVR 60 Query: 61 LTAEGHALFPMLRDGFDRMASAFAAIRPPADGDAITVSTTRAFAERWLMPRLARFNAAFP 120 LT GH LFP +RDG D M A A++ + T+++T AF + L PR +F AA+P Sbjct: 61 LTPAGHQLFPAVRDGLDGMERAVLAVQRSGQTNVATLTSTVAFMAKRLAPRAGQFRAAYP 120 Query: 121 SVVVHIDATEEVRTPGTDGVDLAIRYGRADRAG-ETSVLFSDRYIAVAASTICPPGARLA 179 + +DA++++ D D AIRYG D G LF DR+ + +C PG +LA Sbjct: 121 DWTLRLDASDQIVDLDNDA-DAAIRYGSGDYPGLVVEPLFCDRF-----APVCSPGLKLA 174 Query: 180 -IDDVRSRSLLAFRWKNAALDS---PAWSAWLAKADHDPGRDFRISWYSEEPLALHAAER 235 + D++ +L+ F W A D+ P W WLA A + +++E A+ A Sbjct: 175 SMQDLKHATLVHFEWGAGARDNERAPVWRQWLAHAGVEVTDPHAGLSFTDEIHAVQATIA 234 Query: 236 GLGPLLCSDALVDEQLRQGTLRRLDGPALAGFAYRLVDAPGAARRKSVTAFIDWLR 291 G G L S LV E+L G L + G +L F Y LV + AA R + DW++ Sbjct: 235 GQGVGLLSLTLVAEELASGVLVQPFGLSLESFRYDLVYSERAAERPATRLLRDWVK 290 >ref|YP_001639150.1| LysR substrate-binding protein [Methylobacterium extorquens PA1] gb|ABY30079.1| LysR substrate-binding [Methylobacterium extorquens PA1] Length = 312 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 158/297 (53%), Gaps = 7/297 (2%) Query: 2 RKLPPLNAVRAFEAAARHESFTAAANELCVTVTAISHQVRQLEAILGHRLFERSGRAVVL 61 R LPPL +RAFEAA R SF AA+EL VT TAISHQ+R LE LG RLF R R V L Sbjct: 5 RSLPPLATLRAFEAAGRRLSFRGAADELGVTPTAISHQIRLLEQTLGLRLFHRETRRVRL 64 Query: 62 TAEGHALFPMLRDGFDRMASAFAAIRPPADGDAITVSTTRAFAERWLMPRLARFNAAFPS 121 TAEG L P+LRDGFD A A IR +T+S AF +WL+PRLA F AA P+ Sbjct: 65 TAEGAVLLPVLRDGFDAFAEAIDQIRGRRAAGVLTLSAPTAFVAKWLVPRLADFRAAHPA 124 Query: 122 VVVHIDATEEVRTPGTDGVDLAIRYGRADRAGETSVLFSDRYIAVAASTICPPGARL-AI 180 + + A++ + DGVD+A+RYG G S + R +A + C P + ++ Sbjct: 125 CDLRLHASDSLIDFARDGVDVAVRYG----PGPYSDFDAHRLLAERVTPACSPHLAIRSV 180 Query: 181 DDVRSRSLLAFRWKNAALDSPAWSAWLAKADHDPGRDFRISW-YSEEPLALHAAERGLGP 239 D+R +LL F W ++P W AWL A G D R +S+E + AA G G Sbjct: 181 GDLRHHTLLHFEWPRLTDETPTWPAWLRHAGVT-GVDGRAGIRFSDEGHVIQAAIAGQGI 239 Query: 240 LLCSDALVDEQLRQGTLRRLDGPALAGFAYRLVDAPGAARRKSVTAFIDWLRGEAAA 296 L SD L +L G L + GP L + Y +V + R+ V + WL AA Sbjct: 240 ALLSDVLTAAELTSGALVQPFGPVLDAYPYWVVRPRHSVRKADVEKLVSWLVSAAAG 296 >ref|YP_003067895.1| LysR family transcriptional regulator [Methylobacterium extorquens DM4] emb|CAX23952.1| transcriptional regulator, LysR family [Methylobacterium extorquens DM4] Length = 312 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 158/297 (53%), Gaps = 7/297 (2%) Query: 2 RKLPPLNAVRAFEAAARHESFTAAANELCVTVTAISHQVRQLEAILGHRLFERSGRAVVL 61 R LPPL +RAFEAA R SF AA+EL VT TAISHQ+R LE LG RLF R R V L Sbjct: 5 RSLPPLATLRAFEAAGRRLSFRGAADELGVTPTAISHQIRLLEQTLGLRLFHRETRRVRL 64 Query: 62 TAEGHALFPMLRDGFDRMASAFAAIRPPADGDAITVSTTRAFAERWLMPRLARFNAAFPS 121 TAEG L P+LRDGFD A A IR +T+S AF +WL+PRLA F AA P+ Sbjct: 65 TAEGAVLLPVLRDGFDAFAEAIDQIRGRRAAGVLTLSAPTAFVAKWLVPRLADFRAAHPA 124 Query: 122 VVVHIDATEEVRTPGTDGVDLAIRYGRADRAGETSVLFSDRYIAVAASTICPPGARL-AI 180 + + A++ + DGVD+A+RYG G S + R +A + C P + ++ Sbjct: 125 CDLRLHASDSLIDFARDGVDVAVRYG----PGPYSDFDAHRLLAERVTPACSPHLAIRSV 180 Query: 181 DDVRSRSLLAFRWKNAALDSPAWSAWLAKADHDPGRDFRISW-YSEEPLALHAAERGLGP 239 D+R +LL F W ++P W AWL A G D R +S+E + AA G G Sbjct: 181 GDLRHHTLLHFEWPRLTDETPTWPAWLRHAGVT-GVDGRAGIRFSDEGHVIQAAIAGQGI 239 Query: 240 LLCSDALVDEQLRQGTLRRLDGPALAGFAYRLVDAPGAARRKSVTAFIDWLRGEAAA 296 L SD L ++L G L + GP L Y +V + R+ V + WL AA Sbjct: 240 ALLSDVLTADELTSGALVQPFGPVLDAHPYWVVRPRHSVRKADVEKLVSWLVAAAAG 296