BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0014.p (234 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772139.1| tRNA/rRNA metyltransferase [Bradyrhizobium japo... 395 e-108 ref|YP_001205050.1| putative rRNA methylase 23S rRNA (guanosine-... 393 e-107 ref|YP_001241057.1| putative rRNA methylase [Bradyrhizobium sp. ... 393 e-107 ref|YP_577752.1| RNA methyltransferase TrmH, group 3 [Nitrobacte... 390 e-106 ref|YP_004108361.1| TrmH family RNA methyltransferase [Rhodopseu... 386 e-105 >ref|NP_772139.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110] dbj|BAC50764.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110] Length = 308 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 199/234 (85%), Positives = 212/234 (90%) Query: 1 VILYGWHTVSAALANPDRHIRKLYLTENAAKRLADENIATRVAPEIVRPSEIDRRLTPDG 60 VILYGWH+V+ AL NP R IRKL LTENAA+RLA+ENI TRV PEIVRP EIDR L+PD Sbjct: 73 VILYGWHSVTMALQNPARRIRKLTLTENAARRLAEENIETRVTPEIVRPQEIDRLLSPDA 132 Query: 61 VHQGLLAEADPLPSPGIDTLALEGIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHS 120 VHQGLLAEADPLPSP I+TL EG+VLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHS Sbjct: 133 VHQGLLAEADPLPSPDIETLTPEGMVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHS 192 Query: 121 PEATGVLAKSASGALELVPVVTVQNLARALNELNERGFQTVGLDSEGTEDLGKAALQAPL 180 PEATGVLAK+ASGALELVPVVTVQNLARAL LNERGFQTVGLDSEG+EDL AL+ PL Sbjct: 193 PEATGVLAKAASGALELVPVVTVQNLARALTALNERGFQTVGLDSEGSEDLSNVALREPL 252 Query: 181 ALVLGAEGKGLRQLTRETCRLVARLDMPGEIKSLNVSNACVLALYIGASRLGLM 234 ALVLGAEGKGLRQLTRETC +VARLDMPGEIKSLNVSNA L+LY+GASRLGLM Sbjct: 253 ALVLGAEGKGLRQLTRETCSVVARLDMPGEIKSLNVSNAAALSLYVGASRLGLM 306 >ref|YP_001205050.1| putative rRNA methylase 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB-like [Bradyrhizobium sp. ORS 278] emb|CAL76813.1| putative rRNA methylase; putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB-like [Bradyrhizobium sp. ORS 278] Length = 297 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 199/234 (85%), Positives = 210/234 (89%) Query: 1 VILYGWHTVSAALANPDRHIRKLYLTENAAKRLADENIATRVAPEIVRPSEIDRRLTPDG 60 VILYGWHTVS ALANP R IRKLYLTENAA+RLADE+I TRV PEIVRPS+ID+RL PD Sbjct: 62 VILYGWHTVSLALANPKRRIRKLYLTENAARRLADEHIETRVTPEIVRPSQIDQRLGPDA 121 Query: 61 VHQGLLAEADPLPSPGIDTLALEGIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHS 120 VHQGLLAEADPLPSP IDTLA EG++LVLDQITDPHNVGAILRSAAAF VKAIVTTARHS Sbjct: 122 VHQGLLAEADPLPSPDIDTLAPEGMILVLDQITDPHNVGAILRSAAAFDVKAIVTTARHS 181 Query: 121 PEATGVLAKSASGALELVPVVTVQNLARALNELNERGFQTVGLDSEGTEDLGKAALQAPL 180 PEATGVLAKSASGALELVP++TVQNLARAL LNERGFQTVGLDS G D+ L+ PL Sbjct: 182 PEATGVLAKSASGALELVPMITVQNLARALTRLNERGFQTVGLDSAGDTDIAAVTLRQPL 241 Query: 181 ALVLGAEGKGLRQLTRETCRLVARLDMPGEIKSLNVSNACVLALYIGASRLGLM 234 ALVLGAEGKGLRQLTRETC VARLDMPG IKSLNVSNA VLALY+GASRLGLM Sbjct: 242 ALVLGAEGKGLRQLTRETCSAVARLDMPGAIKSLNVSNAAVLALYVGASRLGLM 295 >ref|YP_001241057.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1] gb|ABQ37151.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1] Length = 280 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 198/234 (84%), Positives = 210/234 (89%) Query: 1 VILYGWHTVSAALANPDRHIRKLYLTENAAKRLADENIATRVAPEIVRPSEIDRRLTPDG 60 VILYGWHTV+ AL NP R IRKLYLTENAA+RLADE I TRV PEIVRPS+ID+RL PD Sbjct: 45 VILYGWHTVTLALGNPKRRIRKLYLTENAARRLADERIETRVTPEIVRPSQIDQRLGPDA 104 Query: 61 VHQGLLAEADPLPSPGIDTLALEGIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHS 120 VHQGLLAEADPLPSP IDTLA EG++LVLDQITDPHNVGAILRSAAAF VKAIVTTARHS Sbjct: 105 VHQGLLAEADPLPSPDIDTLAAEGMILVLDQITDPHNVGAILRSAAAFDVKAIVTTARHS 164 Query: 121 PEATGVLAKSASGALELVPVVTVQNLARALNELNERGFQTVGLDSEGTEDLGKAALQAPL 180 PEATGVLAKSASGALELVP++TVQNLARAL L+ERGFQTVGLDS G D+ AL+ PL Sbjct: 165 PEATGVLAKSASGALELVPIITVQNLARALTRLDERGFQTVGLDSAGPTDIAAVALREPL 224 Query: 181 ALVLGAEGKGLRQLTRETCRLVARLDMPGEIKSLNVSNACVLALYIGASRLGLM 234 ALVLGAEGKGLRQLTRETC +VARLDMPG IKSLNVSNA VLALYIGASRLGLM Sbjct: 225 ALVLGAEGKGLRQLTRETCSVVARLDMPGAIKSLNVSNAAVLALYIGASRLGLM 278 >ref|YP_577752.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14] gb|ABE63292.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14] Length = 283 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 200/233 (85%), Positives = 210/233 (90%) Query: 2 ILYGWHTVSAALANPDRHIRKLYLTENAAKRLADENIATRVAPEIVRPSEIDRRLTPDGV 61 ILYGWHTV+AALANP R IRKL LTENAA+RLA+ENI TR+ PEIVRPS ID+RL PD V Sbjct: 50 ILYGWHTVTAALANPRRRIRKLLLTENAARRLANENIETRLTPEIVRPSAIDQRLGPDAV 109 Query: 62 HQGLLAEADPLPSPGIDTLALEGIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHSP 121 HQGLLAEADPLPSP IDTLA EGIVLVLDQITDPHNVGAI+RSAAAFAVKAIVTTARHSP Sbjct: 110 HQGLLAEADPLPSPDIDTLAQEGIVLVLDQITDPHNVGAIMRSAAAFAVKAIVTTARHSP 169 Query: 122 EATGVLAKSASGALELVPVVTVQNLARALNELNERGFQTVGLDSEGTEDLGKAALQAPLA 181 EATGVLAKSASGALELVP+V VQNLARAL ELN+RGF TVGLDS G EDL L+ PLA Sbjct: 170 EATGVLAKSASGALELVPLVLVQNLARALTELNDRGFMTVGLDSAGGEDLAAIQLRQPLA 229 Query: 182 LVLGAEGKGLRQLTRETCRLVARLDMPGEIKSLNVSNACVLALYIGASRLGLM 234 LVLGAEGKGLRQLTRETC VARLDMPG+IKSLNVSNA VLALYIGASRLGLM Sbjct: 230 LVLGAEGKGLRQLTRETCNAVARLDMPGDIKSLNVSNAAVLALYIGASRLGLM 282 >ref|YP_004108361.1| TrmH family RNA methyltransferase [Rhodopseudomonas palustris DX-1] gb|ADU43628.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas palustris DX-1] Length = 275 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 197/234 (84%), Positives = 210/234 (89%) Query: 1 VILYGWHTVSAALANPDRHIRKLYLTENAAKRLADENIATRVAPEIVRPSEIDRRLTPDG 60 VILYGWHTV+AALANP R RKL+LTENAA++LADENI TR+APEIVRPSEIDRRL PD Sbjct: 39 VILYGWHTVTAALANPRRKFRKLWLTENAARKLADENIDTRIAPEIVRPSEIDRRLGPDA 98 Query: 61 VHQGLLAEADPLPSPGIDTLALEGIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHS 120 VHQG+LAEAD L +P IDTL GIVLVLDQITDPHNVGAILRSAAAFAV+AIVTTARHS Sbjct: 99 VHQGMLAEADALETPRIDTLPEHGIVLVLDQITDPHNVGAILRSAAAFAVQAIVTTARHS 158 Query: 121 PEATGVLAKSASGALELVPVVTVQNLARALNELNERGFQTVGLDSEGTEDLGKAALQAPL 180 PEATGVLAKSASGALELVP+V VQNL+RAL ELNERGF TVGLDSEG +DL AL+ PL Sbjct: 159 PEATGVLAKSASGALELVPLVLVQNLSRALTELNERGFLTVGLDSEGEDDLAAVALRQPL 218 Query: 181 ALVLGAEGKGLRQLTRETCRLVARLDMPGEIKSLNVSNACVLALYIGASRLGLM 234 ALVLGAEGKGLRQLTR+TC VARLDMPGEIKSLNVSNA LALYIGASRLGLM Sbjct: 219 ALVLGAEGKGLRQLTRQTCTTVARLDMPGEIKSLNVSNAAALALYIGASRLGLM 272