BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0002.p         (82 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772148.1| hypothetical protein bsr5508 [Bradyrhizobium ja...   106   1e-21
ref|YP_001205045.1| hypothetical protein BRADO3002 [Bradyrhizobi...    98   5e-19
ref|YP_001241065.1| hypothetical protein BBta_5165 [Bradyrhizobi...    96   1e-18
ref|NP_947172.1| hypothetical protein RPA1827 [Rhodopseudomonas ...    81   5e-14
ref|YP_531630.1| hypothetical protein RPC_1752 [Rhodopseudomonas...    79   2e-13

>ref|NP_772148.1| hypothetical protein bsr5508 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50773.1| bsr5508 [Bradyrhizobium japonicum USDA 110]
          Length = 84

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 68/83 (81%), Gaps = 1/83 (1%)

Query: 1  MPYALFYQDAKLSKAYPTEADVWTLARKSGLVVDAISEE-KSAPRPVLDNDYEIRPCQLE 59
          MPYALF  DA++SKAYP E+DVW LA++SGLVVD  +++ ++ PR VLDNDYEI+PC+  
Sbjct: 1  MPYALFCNDAQISKAYPDESDVWKLAQRSGLVVDVSADDNRAGPRRVLDNDYEIKPCRAA 60

Query: 60 PNEDPAKNKADADREARLEPRLN 82
            EDPA NKA+A+R++R+E +LN
Sbjct: 61 QGEDPATNKAEAERQSRIELQLN 83


>ref|YP_001205045.1| hypothetical protein BRADO3002 [Bradyrhizobium sp. ORS 278]
 emb|CAL76808.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 82

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 60/78 (76%), Gaps = 1/78 (1%)

Query: 1  MPYALFYQDAKLSKAYPTEADVWTLARKSGLVVDA-ISEEKSAPRPVLDNDYEIRPCQLE 59
          MPYALF  +AKLSKAYPTEADVW LAR+SGLVVD  ++  +SA    LDNDYEIRPC  E
Sbjct: 1  MPYALFCNEAKLSKAYPTEADVWRLARQSGLVVDVMMTARRSAGYLQLDNDYEIRPCAAE 60

Query: 60 PNEDPAKNKADADREARL 77
          P EDP +N A+A++E  +
Sbjct: 61 PEEDPWQNCAEAEQEFNI 78


>ref|YP_001241065.1| hypothetical protein BBta_5165 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37159.1| hypothetical protein BBta_5165 [Bradyrhizobium sp. BTAi1]
          Length = 82

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 59/78 (75%), Gaps = 1/78 (1%)

Query: 1  MPYALFYQDAKLSKAYPTEADVWTLARKSGLVVD-AISEEKSAPRPVLDNDYEIRPCQLE 59
          MPYALF  +AKLSKAYPTE DVW LAR+SGLVVD  IS  +S+    LDNDYEIR C  E
Sbjct: 1  MPYALFCNEAKLSKAYPTEGDVWRLARQSGLVVDVTISARRSSVHLQLDNDYEIRACAPE 60

Query: 60 PNEDPAKNKADADREARL 77
          P EDP +N+A+A++E  +
Sbjct: 61 PEEDPWQNRAEAEQEFNI 78


>ref|NP_947172.1| hypothetical protein RPA1827 [Rhodopseudomonas palustris CGA009]
 ref|YP_001991029.1| hypothetical protein Rpal_2031 [Rhodopseudomonas palustris TIE-1]
 emb|CAE27268.1| hypothetical protein RPA1827 [Rhodopseudomonas palustris CGA009]
 gb|ACF00554.1| hypothetical protein Rpal_2031 [Rhodopseudomonas palustris TIE-1]
          Length = 86

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/76 (57%), Positives = 51/76 (67%), Gaps = 9/76 (11%)

Query: 1  MPYALFYQDAKLSKAYPTEADVWTLARKSGLVVDAISEEKSAPRPVLDNDYEIRPCQLEP 60
          MPYALF  DA++SK YPT+ADVW  AR+SGLV+D        PR VLDN YEIR    EP
Sbjct: 1  MPYALFCDDARVSKIYPTQADVWKHARESGLVIDT-----DTPRHVLDNGYEIRASAPEP 55

Query: 61 NEDPAKNKADADREAR 76
           EDP +N    +REAR
Sbjct: 56 GEDPERN----EREAR 67


>ref|YP_531630.1| hypothetical protein RPC_1752 [Rhodopseudomonas palustris BisB18]
 gb|ABD87311.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisB18]
          Length = 83

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 56/77 (72%), Gaps = 2/77 (2%)

Query: 1  MPYALFYQDAKLSKAYPTEADVWTLARKSGLVVDAISEEKS-APRPVLDNDYEIRPCQLE 59
          MPYALF  DAK+SK YPTEA+VW  A++SGL++D   ++ +  PR VL+  YEIRPC+ +
Sbjct: 1  MPYALFCDDAKVSKTYPTEANVWKHAKESGLLIDVEPKDNTPTPRRVLEAGYEIRPCEPD 60

Query: 60 PNEDPAKNKADADREAR 76
          P E+P  N+ +A RE R
Sbjct: 61 PGENPEMNEREA-REQR 76