BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0097.p (346 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001206737.1| putative D-3-phosphoglycerate dehydrogenase ... 602 e-170 ref|YP_001239244.1| putative D-3-phosphoglycerate dehydrogenase ... 593 e-167 ref|YP_002823950.1| phosphoglycerate dehydrogenase [Sinorhizobiu... 521 e-146 ref|NP_386340.1| putative oxidoreductase protein [Sinorhizobium ... 513 e-143 ref|YP_001327826.1| NAD-binding D-isomer specific 2-hydroxyacid ... 509 e-142 >ref|YP_001206737.1| putative D-3-phosphoglycerate dehydrogenase [Bradyrhizobium sp. ORS 278] emb|CAL78520.1| putative D-3-phosphoglycerate dehydrogenase [Bradyrhizobium sp. ORS 278] Length = 346 Score = 602 bits (1551), Expect = e-170, Method: Compositional matrix adjust. Identities = 292/346 (84%), Positives = 317/346 (91%) Query: 1 MSKSIAIVGDRFMLPSVFAEHIRSACGDGVDIRTLEQPWPDEPMEHGYAGSKLDGLKEFM 60 MS SIAI+GDRFMLPSVFAE I + CGD +DIR LEQPWPDEPMEHGYAGSKLDGLKEFM Sbjct: 1 MSSSIAIIGDRFMLPSVFAERITAICGDHLDIRMLEQPWPDEPMEHGYAGSKLDGLKEFM 60 Query: 61 GQPDEIIGFIGDAELLVTHLAPISRSMLERLPKLRFIAVSRGGPVNIDMQAARDHDVLVV 120 G PDE+ FIG+A LLVTHLAPISR+ML+RLP+L+FIAVSRGGPVN+DMQAARDH VLVV Sbjct: 61 GDPDELADFIGEAPLLVTHLAPISRAMLQRLPRLKFIAVSRGGPVNVDMQAARDHGVLVV 120 Query: 121 NTPGRNAGAVAEFTIGAILAETRLIRSGHEALRGGEWRGDLYRADRTGRELGEMTIGIVG 180 NTPGRNA AVAEFTIGA+LAETRLIRSGHE++RGGEWRGDLYRADRTGRELGEMT+GIVG Sbjct: 121 NTPGRNASAVAEFTIGAMLAETRLIRSGHESMRGGEWRGDLYRADRTGRELGEMTVGIVG 180 Query: 181 YGAIGSRVVKLLKAFDCKILVADPYVQLSAQDRNDGVEHVALGELLGRADVVTLHARVTP 240 YGAIG+RVVKLLKAF C+ILV DPYVQL+AQDRNDGVEHVAL ELL RADV++LHARVT Sbjct: 181 YGAIGTRVVKLLKAFGCRILVTDPYVQLTAQDRNDGVEHVALAELLSRADVISLHARVTS 240 Query: 241 ETTRFIGREALTRIKPGAFLINTARGPLVDYDALHDALASGHLGGAMLDTFAVEPVPADW 300 ETT FI REAL RIKPGA LINTARGPLVDY AL + L+SG L GAMLDTFA+EPVP DW Sbjct: 241 ETTGFIDREALARIKPGAILINTARGPLVDYKALFEVLSSGRLAGAMLDTFAIEPVPPDW 300 Query: 301 PLLRLPNVTLTPHIAGASVRTVTVAAVQAAEEVRRFLAGEPPRNPC 346 PLL+LPNVTLTPHIAGASVRTVT+AA QAAEEVRR+LAGEPP NPC Sbjct: 301 PLLQLPNVTLTPHIAGASVRTVTIAADQAAEEVRRYLAGEPPLNPC 346 >ref|YP_001239244.1| putative D-3-phosphoglycerate dehydrogenase [Bradyrhizobium sp. BTAi1] gb|ABQ35338.1| putative D-3-phosphoglycerate dehydrogenase [Bradyrhizobium sp. BTAi1] Length = 352 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 291/345 (84%), Positives = 313/345 (90%), Gaps = 1/345 (0%) Query: 2 SKSIAIVGDRFMLPSVFAEHIRSACGDGVDIRTLEQPWPDEPMEHGYAGSKLDGLKEFMG 61 S SIAI+GDRFMLPSVFAE I + CG GVDIR LEQPWPDEPMEHGYAGSKLDGLKEFMG Sbjct: 9 SPSIAIIGDRFMLPSVFAERITALCG-GVDIRMLEQPWPDEPMEHGYAGSKLDGLKEFMG 67 Query: 62 QPDEIIGFIGDAELLVTHLAPISRSMLERLPKLRFIAVSRGGPVNIDMQAARDHDVLVVN 121 PDE+ FIG A LLVTHLAPISR+ML+RLP L+F+AVSRGGPVN+DMQAARDH VLVVN Sbjct: 68 DPDELADFIGTAPLLVTHLAPISRAMLQRLPSLKFVAVSRGGPVNVDMQAARDHGVLVVN 127 Query: 122 TPGRNAGAVAEFTIGAILAETRLIRSGHEALRGGEWRGDLYRADRTGRELGEMTIGIVGY 181 TPGRNA AVAEFTIGA+LAETRLIRSGHE++RGGEWRGDLYRADRTGRELGEMT+GIVGY Sbjct: 128 TPGRNASAVAEFTIGAMLAETRLIRSGHESMRGGEWRGDLYRADRTGRELGEMTVGIVGY 187 Query: 182 GAIGSRVVKLLKAFDCKILVADPYVQLSAQDRNDGVEHVALGELLGRADVVTLHARVTPE 241 GAIG+RVVKLLK F CKILV DPYVQLSAQDRNDGVEHVAL +LL RADV++LHARVT E Sbjct: 188 GAIGTRVVKLLKPFGCKILVTDPYVQLSAQDRNDGVEHVALADLLARADVISLHARVTAE 247 Query: 242 TTRFIGREALTRIKPGAFLINTARGPLVDYDALHDALASGHLGGAMLDTFAVEPVPADWP 301 TT FI REA+ RIKPGA LINTARGPLVDY AL++AL+S L GAMLDTFAVEPVP DWP Sbjct: 248 TTGFIDREAMARIKPGAILINTARGPLVDYQALYEALSSQRLAGAMLDTFAVEPVPPDWP 307 Query: 302 LLRLPNVTLTPHIAGASVRTVTVAAVQAAEEVRRFLAGEPPRNPC 346 LL+LPNVTLTPHIAGASVRTVT AA QAAEEVRR+LAGEPP NPC Sbjct: 308 LLQLPNVTLTPHIAGASVRTVTFAADQAAEEVRRYLAGEPPLNPC 352 >ref|YP_002823950.1| phosphoglycerate dehydrogenase [Sinorhizobium fredii NGR234] gb|AAQ87122.1| D-3-phosphoglycerate dehydrogenase [Sinorhizobium fredii NGR234] gb|ACP23197.1| phosphoglycerate dehydrogenase [Sinorhizobium fredii NGR234] Length = 345 Score = 521 bits (1342), Expect = e-146, Method: Compositional matrix adjust. Identities = 250/344 (72%), Positives = 289/344 (84%) Query: 3 KSIAIVGDRFMLPSVFAEHIRSACGDGVDIRTLEQPWPDEPMEHGYAGSKLDGLKEFMGQ 62 K IAI+GDRFMLP VF + I +ACGDG DIRTLEQPWPD PMEHGYA +DGLKE++G+ Sbjct: 2 KKIAIIGDRFMLPDVFRDKIVAACGDGHDIRTLEQPWPDVPMEHGYAVEGMDGLKEYLGK 61 Query: 63 PDEIIGFIGDAELLVTHLAPISRSMLERLPKLRFIAVSRGGPVNIDMQAARDHDVLVVNT 122 P EI+ FIGDAE+LVT LAP+SR+M LP+L+ +AVSRGGPVNIDM AARD V VVNT Sbjct: 62 PKEIVDFIGDAEILVTQLAPLSRAMFSELPRLKLVAVSRGGPVNIDMDAARDAGVRVVNT 121 Query: 123 PGRNAGAVAEFTIGAILAETRLIRSGHEALRGGEWRGDLYRADRTGRELGEMTIGIVGYG 182 PGRNA AVAEFTIGAILAETRLIR GHEALR GEWRGDLYRADRTGREL E+TIG++GYG Sbjct: 122 PGRNASAVAEFTIGAILAETRLIRVGHEALRKGEWRGDLYRADRTGRELSELTIGVIGYG 181 Query: 183 AIGSRVVKLLKAFDCKILVADPYVQLSAQDRNDGVEHVALGELLGRADVVTLHARVTPET 242 IG++VV+LL+AF ++LV DPYVQLSA+DRN GVEHV+ +LL R+DVVTLH RVT ET Sbjct: 182 NIGTKVVRLLRAFGTEVLVHDPYVQLSAEDRNAGVEHVSRDDLLARSDVVTLHPRVTAET 241 Query: 243 TRFIGREALTRIKPGAFLINTARGPLVDYDALHDALASGHLGGAMLDTFAVEPVPADWPL 302 + E ++KPGA +NTARGPL DY+AL+++L SGHL AML+TFAVEPVP DWPL Sbjct: 242 RNMMNAETFAKMKPGAVFVNTARGPLCDYEALYESLVSGHLSSAMLETFAVEPVPEDWPL 301 Query: 303 LRLPNVTLTPHIAGASVRTVTVAAVQAAEEVRRFLAGEPPRNPC 346 L+LPNVTLTPHIAGASVRTVT AA AAEEVRR++AG PP NPC Sbjct: 302 LKLPNVTLTPHIAGASVRTVTHAAEMAAEEVRRYIAGLPPVNPC 345 >ref|NP_386340.1| putative oxidoreductase protein [Sinorhizobium meliloti 1021] ref|YP_004549548.1| phosphoglycerate dehydrogenase [Sinorhizobium meliloti AK83] emb|CAC46813.1| Oxidoreductase [Sinorhizobium meliloti 1021] gb|AEG04963.1| Phosphoglycerate dehydrogenase [Sinorhizobium meliloti BL225C] gb|AEG53934.1| Phosphoglycerate dehydrogenase [Sinorhizobium meliloti AK83] gb|AEH78302.1| oxidoreductase [Sinorhizobium meliloti SM11] Length = 345 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 247/344 (71%), Positives = 285/344 (82%) Query: 3 KSIAIVGDRFMLPSVFAEHIRSACGDGVDIRTLEQPWPDEPMEHGYAGSKLDGLKEFMGQ 62 K IAI+GDRFMLP VF + I ACGD +I LE PWPD PMEHGYA +DGLKE++G+ Sbjct: 2 KKIAIIGDRFMLPDVFRDKIVEACGDEHEISMLELPWPDVPMEHGYAVEGMDGLKEYLGK 61 Query: 63 PDEIIGFIGDAELLVTHLAPISRSMLERLPKLRFIAVSRGGPVNIDMQAARDHDVLVVNT 122 P +I+ F+GDAE+LVT LAP+SR+ML LP L+ +AVSRGGPVNIDM+AAR+ VLVVNT Sbjct: 62 PGDIVDFVGDAEILVTQLAPLSRTMLADLPGLKLVAVSRGGPVNIDMKAAREAGVLVVNT 121 Query: 123 PGRNAGAVAEFTIGAILAETRLIRSGHEALRGGEWRGDLYRADRTGRELGEMTIGIVGYG 182 PGRNA AVAEFTIGAILAETRLIR GHEALR EWRGDLYRADRTGREL EMT+G++GYG Sbjct: 122 PGRNASAVAEFTIGAILAETRLIRVGHEALRRSEWRGDLYRADRTGRELSEMTVGVIGYG 181 Query: 183 AIGSRVVKLLKAFDCKILVADPYVQLSAQDRNDGVEHVALGELLGRADVVTLHARVTPET 242 IG++VV+LL+AF K+LV DPYVQLSA+DRN GVEHVAL ELL RAD+VTLH RV+ ET Sbjct: 182 NIGTKVVRLLRAFGTKVLVHDPYVQLSAEDRNAGVEHVALDELLARADLVTLHPRVSEET 241 Query: 243 TRFIGREALTRIKPGAFLINTARGPLVDYDALHDALASGHLGGAMLDTFAVEPVPADWPL 302 + E ++KPGA +NTARGPL DYDAL++ L SGHL AML+TFAVEPVP DWPL Sbjct: 242 KNLMNAETFAKMKPGAIFVNTARGPLCDYDALYENLVSGHLASAMLETFAVEPVPEDWPL 301 Query: 303 LRLPNVTLTPHIAGASVRTVTVAAVQAAEEVRRFLAGEPPRNPC 346 L+LPNVTLTPHIAGASVRTVT AA AAEEVRR++AG PP NPC Sbjct: 302 LKLPNVTLTPHIAGASVRTVTYAAEMAAEEVRRYIAGLPPVNPC 345 >ref|YP_001327826.1| NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase [Sinorhizobium medicae WSM419] gb|ABR60991.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [Sinorhizobium medicae WSM419] Length = 345 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 246/344 (71%), Positives = 284/344 (82%) Query: 3 KSIAIVGDRFMLPSVFAEHIRSACGDGVDIRTLEQPWPDEPMEHGYAGSKLDGLKEFMGQ 62 K IAI+GDRFMLP VF + I ACGDG +I LE PWPD PMEHGYA +DGLKE++G+ Sbjct: 2 KKIAIIGDRFMLPDVFRDKIVEACGDGHEISMLELPWPDVPMEHGYAVEGMDGLKEYLGK 61 Query: 63 PDEIIGFIGDAELLVTHLAPISRSMLERLPKLRFIAVSRGGPVNIDMQAARDHDVLVVNT 122 P EI+ FIGDAE+LVT LAP+SR+ML+ LP L+ +AVSRGGPVNID++AARD V VVN Sbjct: 62 PGEIVDFIGDAEILVTQLAPLSRTMLQDLPGLKLVAVSRGGPVNIDIKAARDAGVRVVNA 121 Query: 123 PGRNAGAVAEFTIGAILAETRLIRSGHEALRGGEWRGDLYRADRTGRELGEMTIGIVGYG 182 PGRNA AVAEFTIGAILAETRLIR GHEALR EWRGDLYRADRTGREL EMT+G++GYG Sbjct: 122 PGRNASAVAEFTIGAILAETRLIRVGHEALRRSEWRGDLYRADRTGRELSEMTVGVIGYG 181 Query: 183 AIGSRVVKLLKAFDCKILVADPYVQLSAQDRNDGVEHVALGELLGRADVVTLHARVTPET 242 IG+RVV+LL+AF K+LV DPYVQLSA+DRN GVEHV+L +LL RAD+VTLH RV+ ET Sbjct: 182 NIGTRVVRLLRAFGTKVLVHDPYVQLSAEDRNAGVEHVSLDDLLARADLVTLHPRVSEET 241 Query: 243 TRFIGREALTRIKPGAFLINTARGPLVDYDALHDALASGHLGGAMLDTFAVEPVPADWPL 302 + E ++KPGA +NTARGPL DYDAL++ L SGHL AML+TFAVEPVP WPL Sbjct: 242 RNMMNAETFAKMKPGAIFVNTARGPLCDYDALYENLVSGHLASAMLETFAVEPVPEGWPL 301 Query: 303 LRLPNVTLTPHIAGASVRTVTVAAVQAAEEVRRFLAGEPPRNPC 346 L+LPNVTLTPHIAGASVRTVT AA AAEEVRR++AG PP NPC Sbjct: 302 LKLPNVTLTPHIAGASVRTVTYAAEMAAEEVRRYIAGLPPVNPC 345