BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0076.p (179 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07047051.1| LysR family transcriptional regulator [Comamo... 67 1e-09 ref|NP_349953.1| LysR family transcriptional regulator [Clostrid... 64 7e-09 ref|YP_003452339.1| transcriptional regulator [Azospirillum sp. ... 59 3e-07 ref|NP_773884.1| transcriptional regulator [Bradyrhizobium japon... 57 8e-07 ref|YP_003979142.1| LysR family transcriptional regulator [Achro... 57 2e-06 >ref|ZP_07047051.1| LysR family transcriptional regulator [Comamonas testosteroni S44] gb|EFI59382.1| LysR family transcriptional regulator [Comamonas testosteroni S44] Length = 308 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 11/180 (6%) Query: 1 VRLELSEGLTESASERLLRGELDLAIVTTPPPNDHLDYELLIVEQVFLIGPSRDPLLKRG 60 VRL + EG + + LL+G LD+A++ P +L L+ E + LIG S DP+L+ Sbjct: 121 VRLRVEEGFSPALHSMLLQGALDIAVLNGPVQLSNLVSFPLLNEGICLIGRSDDPVLRSR 180 Query: 61 RLTRKEFDALPSAVAPLSRNPF-----------PSTMLCAVRVDNSTPMKRMVAAGLGYA 109 +++ ++ + +P + L+++ T+ V V+ KR++ +G Sbjct: 181 KISIQKLEGVPLVMTGLAKSGVRLELEAGAAHAGVTLNQVVEVNTMEVAKRLILEKVGLT 240 Query: 110 LLPFSGIHQEVAAGALSAALLPWMRAERVLALPRGRPVSRATREAIAVLKKICRALIDEG 169 + + + QE+ G L+A + +R R+LA RP S+AT E I + + R + G Sbjct: 241 VHFAAAVKQELELGVLAAVPIEGLRLRRILARVADRPPSKATEELIRIFHDVVRQEVQNG 300 >ref|NP_349953.1| LysR family transcriptional regulator [Clostridium acetobutylicum ATCC 824] ref|YP_004638012.1| LysR family transcriptional regulator [Clostridium acetobutylicum DSM 1731] gb|AAK81293.1|AE007833_6 Transcriptional regulator, LysR family [Clostridium acetobutylicum ATCC 824] gb|ADZ22401.1| Transcriptional regulator, LysR family [Clostridium acetobutylicum EA 2018] gb|AEI32795.1| LysR family transcriptional regulator [Clostridium acetobutylicum DSM 1731] Length = 312 Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 89/182 (48%), Gaps = 27/182 (14%) Query: 1 VRLELSEGLTESASERLLRGELDLAIVTTPPPNDHLDYELLIVEQVFLIGPSRDP----- 55 + + + E + + LL G++D+AI+T P ++ + YE ++ E++FLI P + P Sbjct: 120 IEIIVEENIVSELEKMLLEGKIDIAILTLPVQHEKITYESIMNERIFLIAPKKHPICSVD 179 Query: 56 --------------LLKRGRLTRKEFDALPSAVAPLSRNPFPSTMLCAVRVDNSTPMKRM 101 LLK+G+ R D + S + P+ +L +D + RM Sbjct: 180 GRISFNFIRNEKFILLKKGQRIRLIVDDIFSRIGAK-----PNIILEITNLDAAY---RM 231 Query: 102 VAAGLGYALLPFSGIHQEVAAGALSAALLPWMRAERVLALPRGRPVSRATREAIAVLKKI 161 ++G+G+ ++P + ++ G + ++ + V+A +G ++RA+RE IA LK + Sbjct: 232 ASSGMGFTIVPENVLYLLNTNGKENDFIIDSLEHTLVVAYRKGEYLTRASREFIANLKGV 291 Query: 162 CR 163 + Sbjct: 292 MK 293 >ref|YP_003452339.1| transcriptional regulator [Azospirillum sp. B510] dbj|BAI75795.1| transcriptional regulator [Azospirillum sp. B510] Length = 304 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 86/189 (45%), Gaps = 27/189 (14%) Query: 1 VRLELSEGLTESASERLLRGELDLAIVTTPPPNDHLDYELLIVEQVFLIGPSRDPLLKRG 60 +RL + EGL+ E +L G LDLA+V LD +L+ E + L+GP+ DPLL RG Sbjct: 120 IRLRVVEGLSGHMLEWVLSGRLDLALVFGAKEMGGLDTKLVARESLHLVGPADDPLL-RG 178 Query: 61 RLTRKEFDALPSAVA---PLSRNPFP---------------STMLCAVRVDNSTPMKRMV 102 R DA+P A A PL P + + A+ +D +K +V Sbjct: 179 R------DAIPFAEALALPLILPGRPHGVREEVEHAALVARADVTVALEIDALEQIKALV 232 Query: 103 AAGLGYALLPFSGIHQEVAAGALSA--ALLPWMRAERVLALPRGRPVSRATREAIAVLKK 160 A G GY +L AA L+ + P + +LA GRP+S A R A+L Sbjct: 233 AEGCGYTVLSERVARHGTAAERLTGLPIVDPQIDRTILLAHAAGRPLSAAARATRAILDG 292 Query: 161 ICRALIDEG 169 I L EG Sbjct: 293 ILAGLTREG 301 >ref|NP_773884.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC52509.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 306 Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 13/182 (7%) Query: 1 VRLELSEGLTESASERLLRGELDLAIVTTPPPNDHLDYELLIVEQVFLIGP-----SRDP 55 + L + E + E L RGE+DLAI+ + HL+ + L + + +GP +R Sbjct: 120 ISLRIVESYSGHLVEWLHRGEMDLAILYGRSADLHLNVQSLGRDNIVAVGPRGCGLARKK 179 Query: 56 LLKRGRLTRKEFDALPS------AVAPLSRNPFPSTMLCAVRVDNSTPMKRMVAAGLGYA 109 ++ G L R+ LPS A+ + + + D+ + +V GLG+A Sbjct: 180 SVEIGWLLRQRL-VLPSHSHGLRALIEHAAAQRKIKLNVQLEADSFRVLTSLVEEGLGFA 238 Query: 110 LLPFSGIHQEVAAGALSAALLPW-MRAERVLALPRGRPVSRATREAIAVLKKICRALIDE 168 LLP S +H EVA G L A++ M E + A P RP S A+ A+L++ A E Sbjct: 239 LLPPSSVHGEVADGRLETAVVSRPMTRELIFASPIDRPASTASLAITALLREEVAACRKE 298 Query: 169 GI 170 G+ Sbjct: 299 GV 300 >ref|YP_003979142.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP16427.1| bacterial regulatory helix-turn-helix protein, LysR family protein 93 [Achromobacter xylosoxidans A8] Length = 308 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 11/179 (6%) Query: 1 VRLELSEGLTESASERLLRGELDLAIVTTPPPNDHLDYELLIVEQVFLIGPSRDPLLKRG 60 VRL + + + E LL+G++DLA++ P P +L + E + LIGP + Sbjct: 120 VRLRFVQAFSPALHEMLLKGQVDLAVLNGPVPLANLLTYPFLTEGMCLIGPPTPRKTRPA 179 Query: 61 RLTRKEFDALPSAVAPLSRNPFPSTMLC-----------AVRVDNSTPMKRMVAAGLGYA 109 R+ ++ LP + L+++ + V V+ KR++ +G Sbjct: 180 RIGVRDLAELPLVMTGLAKSGVRLELEAQAAHAGVHLNPVVEVETMEVAKRLIKEKVGVT 239 Query: 110 LLPFSGIHQEVAAGALSAALLPWMRAERVLALPRGRPVSRATREAIAVLKKICRALIDE 168 + + + +++ G LSA + + R+LA P RP SRAT+ + +L+ + R L+ + Sbjct: 240 VHFAATVLEDIEEGRLSAQPIEGLSLRRMLAHPSDRPASRATKAVVEILRLVARELVAQ 298