BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0066.p (344 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003757059.1| hypothetical protein Hden_2943 [Hyphomicrobi... 478 e-133 ref|YP_001796774.1| hypothetical protein RALTA_B0340 [Cupriavidu... 475 e-132 ref|YP_001832751.1| hypothetical protein Bind_1631 [Beijerinckia... 467 e-129 ref|YP_299351.1| hypothetical protein Reut_B5159 [Ralstonia eutr... 465 e-129 ref|ZP_02928452.1| hypothetical protein VspiD_17420 [Verrucomicr... 462 e-128 >ref|YP_003757059.1| hypothetical protein Hden_2943 [Hyphomicrobium denitrificans ATCC 51888] gb|ADJ24738.1| protein of unknown function DUF1214 [Hyphomicrobium denitrificans ATCC 51888] Length = 369 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 230/333 (69%), Positives = 266/333 (79%), Gaps = 4/333 (1%) Query: 11 VTFAV--ITNAQAQSPAGSAVPVTVDNFARAESDLYFGNSIKDTGGTGKLFHHREPMSID 68 VT AV ++ + S + VPVTVDNF RAESD+Y N+IKD G GKL H+REP ID Sbjct: 21 VTGAVRQVSAEEGLSTSSKEVPVTVDNFPRAESDVYMANAIKD-GDFGKLKHNREPTPID 79 Query: 69 KQTVIRANRDTLYSSGVFDLDAGPVTITLPDAGKRFRSLMAINEDHYVVGNVEYRAGSFT 128 KQTVIR NRDTLYS GVFDLDAGPVTI +PDAGKRF +L INEDHYV V Y G+ T Sbjct: 80 KQTVIRMNRDTLYSFGVFDLDAGPVTIAMPDAGKRFMTLQVINEDHYVPA-VYYGPGAHT 138 Query: 129 YDRAKAGTRYMLIGLRTLVDPNDPKDVAQVHALQDGIKVSQKAQGKFEVPNWDQASQKSI 188 R GTRYM +G+RTL+DPND +DV +VHALQD IKV QK+ G F+VPNWDQASQK I Sbjct: 139 LTRENVGTRYMTVGIRTLIDPNDAEDVKEVHALQDAIKVEQKSAGTFDVPNWDQASQKKI 198 Query: 189 RGALLVLNDYTGGFAHAFGAKGQVDPVRHLIGTAAGWGGNPDKDASYLSITPSRNDGTTV 248 R ALLVL+ +TGGF +AFG K +VDPVRHLI TAAGWGGNPDKDA+YLS P++NDGT V Sbjct: 199 RDALLVLSQFTGGFKNAFGTKSEVDPVRHLIATAAGWGGNPDKDATYLSFVPAKNDGTMV 258 Query: 249 YKLTVREVPVDAFWSISVYDAKGYFEKNPYDAYTLNNITAKKSADGSIAIQFGGCDGKIP 308 YKL V++VPVD FWS++VY+A+GY +KN Y+AY+LNNITA K+ADGSI IQFGGCDGK Sbjct: 259 YKLDVKDVPVDGFWSVTVYNAEGYLQKNEYNAYSLNNITASKAADGSIEIQFGGCDGKTI 318 Query: 309 NCLPIMKGWNYTVRLYRPRPEILNGKWKFPEAQ 341 NCLPIM GWNYTVRLYRP+ IL+G WKFPEAQ Sbjct: 319 NCLPIMPGWNYTVRLYRPQTSILDGSWKFPEAQ 351 >ref|YP_001796774.1| hypothetical protein RALTA_B0340 [Cupriavidus taiwanensis LMG 19424] emb|CAP63537.1| conserved hypothetical protein, DUF1254 DUF1214 [Cupriavidus taiwanensis LMG 19424] Length = 348 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 226/338 (66%), Positives = 266/338 (78%), Gaps = 6/338 (1%) Query: 11 VTFAVITNAQAQS----PAGSAVPVTVDNFARAESDLYFGNSIKDTGGTGKLFHHREPMS 66 + FA++ AQ PAG+AVPVTVDNF RAE+D+Y G +K GG GKL H REP S Sbjct: 13 IAFAMLGTVHAQPATTPPAGAAVPVTVDNFIRAETDMYLGGLVKQ-GGIGKLLHRREPAS 71 Query: 67 IDKQTVIRANRDTLYSSGVFDLDAGPVTITLPDAGKRFRSLMAINEDHYVVGNVEYRAGS 126 ID+QTVIR NRDTLYSSGVFDLDAGPVTIT+PD GKRF +L INEDHYV NV Y G+ Sbjct: 72 IDQQTVIRLNRDTLYSSGVFDLDAGPVTITMPDPGKRFMALQVINEDHYV-PNVFYGKGT 130 Query: 127 FTYDRAKAGTRYMLIGLRTLVDPNDPKDVAQVHALQDGIKVSQKAQGKFEVPNWDQASQK 186 +T R GTRY+ +RTLVDPN D+ QVH LQD IKVSQ+A GKFE P WD ASQK Sbjct: 131 YTLTRENVGTRYVAAAIRTLVDPNSADDIRQVHVLQDAIKVSQQATGKFETPAWDAASQK 190 Query: 187 SIRGALLVLNDYTGGFAHAFGAKGQVDPVRHLIGTAAGWGGNPDKDASYLSITPSRNDGT 246 IR ALLVL+ F AFG + VDPVR LIGTAA WGGNPDKDA YL+ITP++NDG Sbjct: 191 KIRDALLVLSSTMPDFRQAFGTRETVDPVRRLIGTAAAWGGNPDKDAVYLNITPAKNDGK 250 Query: 247 TVYKLTVREVPVDAFWSISVYDAKGYFEKNPYDAYTLNNITAKKSADGSIAIQFGGCDGK 306 TVY+L V++VPVDAFWS+SVY+A GYF+KNP +AYT+NN+TAKKS+DG+IAIQFGGCDG+ Sbjct: 251 TVYRLNVKDVPVDAFWSVSVYNAAGYFQKNPANAYTVNNLTAKKSSDGAIAIQFGGCDGQ 310 Query: 307 IPNCLPIMKGWNYTVRLYRPRPEILNGKWKFPEAQAVN 344 +PNCLP+++GWNYTVRLYRPR E+L+G W FP+ Q VN Sbjct: 311 VPNCLPVVEGWNYTVRLYRPRAEVLSGAWNFPQPQPVN 348 >ref|YP_001832751.1| hypothetical protein Bind_1631 [Beijerinckia indica subsp. indica ATCC 9039] gb|ACB95262.1| protein of unknown function DUF1214 [Beijerinckia indica subsp. indica ATCC 9039] Length = 798 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 222/327 (67%), Positives = 257/327 (78%), Gaps = 2/327 (0%) Query: 17 TNAQAQSPAGSAVPVTVDNFARAESDLYFGNSIKDTGGTGKLFHHREPMSIDKQTVIRAN 76 T + + A + +PVTVDNF RAESD Y +K+ GG GK H REP +ID QTVIR N Sbjct: 473 TQSSPKPRAVNTIPVTVDNFIRAESDTYLAALVKE-GGLGKFNHRREPAAIDNQTVIRLN 531 Query: 77 RDTLYSSGVFDLDAGPVTITLPDAGKRFRSLMAINEDHYVVGNVEYRAGSFTYDRAKAGT 136 RDTLYSS VFDLDAGPVTI+LPDAGKRF S+ IN+DHYV V Y AGS+T+D+ K GT Sbjct: 532 RDTLYSSAVFDLDAGPVTISLPDAGKRFMSMQVINQDHYVPA-VVYGAGSYTFDKEKVGT 590 Query: 137 RYMLIGLRTLVDPNDPKDVAQVHALQDGIKVSQKAQGKFEVPNWDQASQKSIRGALLVLN 196 RY L +RTLV+P DPKD+ QVHALQD IKV QK+ G F VPNWD+ASQK +R ALLVL+ Sbjct: 591 RYALFAIRTLVNPADPKDIDQVHALQDAIKVEQKSLGSFTVPNWDRASQKKVRDALLVLS 650 Query: 197 DYTGGFAHAFGAKGQVDPVRHLIGTAAGWGGNPDKDASYLSITPSRNDGTTVYKLTVREV 256 F AFG K VDPVRHLIGTA+ WGGNPDKDA+YL+ITPS+NDG T+Y+L V+ V Sbjct: 651 STLPDFKKAFGTKDDVDPVRHLIGTASAWGGNPDKDATYLNITPSKNDGATIYRLNVKNV 710 Query: 257 PVDAFWSISVYDAKGYFEKNPYDAYTLNNITAKKSADGSIAIQFGGCDGKIPNCLPIMKG 316 PVD FWS+SVY+A+GY++ NP +AYTLN+ITAKKS DGSI +QFGGCDGKI NCLPIM G Sbjct: 711 PVDGFWSVSVYNAEGYYQPNPLNAYTLNDITAKKSDDGSITVQFGGCDGKIANCLPIMPG 770 Query: 317 WNYTVRLYRPRPEILNGKWKFPEAQAV 343 WNYTVRLYRPR EILNG W FPE Q V Sbjct: 771 WNYTVRLYRPRAEILNGTWSFPEPQPV 797 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 8/96 (8%) Query: 257 PVDAFWSISVYD-AKGYFEKNPYDAYTLNNITA---KKSADGSIAIQF---GGCDGKIPN 309 PV+AFWS+++Y+ NP + Y +N+ K+ ADG I + + N Sbjct: 375 PVNAFWSLTLYELPSSLLSANPLNRYLINSPMLPDLKRDADGGITLYVQHDSPGKEREAN 434 Query: 310 CLPIMKGWNYTV-RLYRPRPEILNGKWKFPEAQAVN 344 LP G +TV RLY P+P L+G WK P VN Sbjct: 435 WLPAPNGPFFTVMRLYWPKPAALDGAWKAPPLLRVN 470 >ref|YP_299351.1| hypothetical protein Reut_B5159 [Ralstonia eutropha JMP134] gb|AAZ64507.1| Protein of unknown function DUF1214 [Ralstonia eutropha JMP134] Length = 344 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 227/345 (65%), Positives = 266/345 (77%), Gaps = 8/345 (2%) Query: 6 IAFGLVTFAV----ITNAQ--AQSPAGSAVPVTVDNFARAESDLYFGNSIKDTGGTGKLF 59 IA LV FA+ T+ Q A AG+ VPVTVDNF RAESD+Y K G G L Sbjct: 2 IAEALVGFALAGVGTTHGQTVAAQAAGATVPVTVDNFVRAESDMYIARVAKQDG-VGNLM 60 Query: 60 HHREPMSIDKQTVIRANRDTLYSSGVFDLDAGPVTITLPDAGKRFRSLMAINEDHYVVGN 119 H REP SID+QTVIR NRDTLYSSGVFDLDAGPVTIT+P++GKRF SL I+EDHYV N Sbjct: 61 HRREPASIDQQTVIRLNRDTLYSSGVFDLDAGPVTITMPESGKRFMSLQVISEDHYV-PN 119 Query: 120 VEYRAGSFTYDRAKAGTRYMLIGLRTLVDPNDPKDVAQVHALQDGIKVSQKAQGKFEVPN 179 V Y AG+ + R GTRY+++ +RTLVDPND D+ QVHALQD IKVSQKA GK E+P+ Sbjct: 120 VFYGAGTHSLTRENVGTRYVVVAIRTLVDPNDSNDLKQVHALQDVIKVSQKATGKLELPS 179 Query: 180 WDQASQKSIRGALLVLNDYTGGFAHAFGAKGQVDPVRHLIGTAAGWGGNPDKDASYLSIT 239 WDQ SQK +R ALL L+ T F +FG KG+VDPVRHL+GTAAGWGGNPDKDA+YL+IT Sbjct: 180 WDQVSQKKVRDALLALSATTSDFKRSFGKKGEVDPVRHLMGTAAGWGGNPDKDATYLNIT 239 Query: 240 PSRNDGTTVYKLTVREVPVDAFWSISVYDAKGYFEKNPYDAYTLNNITAKKSADGSIAIQ 299 P +NDG TVY++ V++VPVD FWS+SVY+A+GYF+KNP + YT+NNITAKK DGSI IQ Sbjct: 240 PEKNDGKTVYRVNVKDVPVDGFWSVSVYNAEGYFQKNPANVYTVNNITAKKDGDGSIPIQ 299 Query: 300 FGGCDGKIPNCLPIMKGWNYTVRLYRPRPEILNGKWKFPEAQAVN 344 FGGC+G+ PNCLPI+ GWNYTVRLYRP EIL G W FP AQ VN Sbjct: 300 FGGCNGQSPNCLPIVPGWNYTVRLYRPHSEILRGAWSFPPAQPVN 344 >ref|ZP_02928452.1| hypothetical protein VspiD_17420 [Verrucomicrobium spinosum DSM 4136] Length = 342 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/334 (66%), Positives = 259/334 (77%), Gaps = 3/334 (0%) Query: 10 LVTFAVITNAQAQSPAGSAVPVTVDNFARAESDLYFGNSIKDTGGT-GKLFHHREPMSID 68 +TF A +P PVTVDNF RAESD+YF IKD+GG GK H REP SID Sbjct: 7 FLTFTTSAFLVAATPGAEPTPVTVDNFVRAESDMYFSGVIKDSGGVLGKFNHRREPASID 66 Query: 69 KQTVIRANRDTLYSSGVFDLDAGPVTITLPDAGKRFRSLMAINEDHYVVGNVEYRAGSFT 128 QTVIR NRDTLYSS VFDLDAGPVTITLPDAGKRFRSL INEDHYV V Y +GS T Sbjct: 67 HQTVIRLNRDTLYSSAVFDLDAGPVTITLPDAGKRFRSLQVINEDHYV-PEVIYASGSHT 125 Query: 129 YDRAKAGTRYMLIGLRTLVDPNDPKDVAQVHALQDGIKVSQKA-QGKFEVPNWDQASQKS 187 ++AK GTRY+ + LRTLV+P DP D+ VHALQDG+KV Q GKFEVP W+QA QK Sbjct: 126 LEKAKVGTRYVAVALRTLVNPADPADIKAVHALQDGVKVEQPGGPGKFEVPEWNQADQKK 185 Query: 188 IRGALLVLNDYTGGFAHAFGAKGQVDPVRHLIGTAAGWGGNPDKDASYLSITPSRNDGTT 247 +R ALLVL F AFG K +V+P+RHLIG+AAGWGGNPDKDA YL++TP+ NDGTT Sbjct: 186 VREALLVLASAIPDFKKAFGTKEEVNPIRHLIGSAAGWGGNPDKDAVYLNVTPALNDGTT 245 Query: 248 VYKLTVREVPVDAFWSISVYDAKGYFEKNPYDAYTLNNITAKKSADGSIAIQFGGCDGKI 307 +YKL V++VPV+AFWS+SVY+A GY+EKNP+DAYT+N+IT +K+ DG++ IQFGG DGK Sbjct: 246 IYKLVVKDVPVEAFWSVSVYNADGYYEKNPHDAYTINSITGQKAGDGTVTIQFGGYDGKT 305 Query: 308 PNCLPIMKGWNYTVRLYRPRPEILNGKWKFPEAQ 341 PNC+PI KGWNYTVRLYRPR EIL+G W+FPE Q Sbjct: 306 PNCIPISKGWNYTVRLYRPRTEILDGSWQFPEPQ 339