BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0062.p         (79 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_01048271.1| hypothetical protein NB311A_08839 [Nitrobacte...   120   1e-25
ref|YP_001418301.1| hypothetical protein Xaut_3415 [Xanthobacter...   100   1e-19
ref|YP_003757060.1| hypothetical protein Hden_2944 [Hyphomicrobi...    94   6e-18
ref|YP_001768170.1| hypothetical protein M446_1211 [Methylobacte...    92   2e-17
ref|YP_578198.1| hypothetical protein Nham_2978 [Nitrobacter ham...    92   3e-17

>ref|ZP_01048271.1| hypothetical protein NB311A_08839 [Nitrobacter sp. Nb-311A]
 gb|EAQ33762.1| hypothetical protein NB311A_08839 [Nitrobacter sp. Nb-311A]
          Length = 90

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 67/77 (87%)

Query: 1  MSGYDIFAWIVLVILLASAIGVFCIAGWLPGHIAKSRNHPYAQAVTVAGWITLLFGFALW 60
          MS  DIFAWIVL+IL+ASAI +F I GWLPGHIAK+RNHP A+AVTVAGW+TL+FGFALW
Sbjct: 10 MSVLDIFAWIVLLILVASAIAMFFIMGWLPGHIAKTRNHPQAEAVTVAGWVTLIFGFALW 69

Query: 61 PIALIWAYVDVPQRRSG 77
          P+++IWAYVD+P  R  
Sbjct: 70 PLSVIWAYVDIPAVRKA 86


>ref|YP_001418301.1| hypothetical protein Xaut_3415 [Xanthobacter autotrophicus Py2]
 gb|ABS68644.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
          Length = 83

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 61/74 (82%)

Query: 1  MSGYDIFAWIVLVILLASAIGVFCIAGWLPGHIAKSRNHPYAQAVTVAGWITLLFGFALW 60
          M+  DIFA IVLV+++ASA+ +F I G  PG IA+ R+HP+A+AV+VAGW+TLL GF LW
Sbjct: 1  MAFIDIFAIIVLVVVIASAVALFVILGMTPGAIARRRSHPWAEAVSVAGWVTLLCGFVLW 60

Query: 61 PIALIWAYVDVPQR 74
          PIALIWAYVDVP R
Sbjct: 61 PIALIWAYVDVPAR 74


>ref|YP_003757060.1| hypothetical protein Hden_2944 [Hyphomicrobium denitrificans ATCC
          51888]
 gb|ADJ24739.1| conserved hypothetical protein [Hyphomicrobium denitrificans ATCC
          51888]
          Length = 78

 Score = 94.4 bits (233), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 57/77 (74%)

Query: 1  MSGYDIFAWIVLVILLASAIGVFCIAGWLPGHIAKSRNHPYAQAVTVAGWITLLFGFALW 60
          MS  D FAW VL+ LL +A+  F      PG+IAKSRNHP+ QAVTVAGW+TL+ GF LW
Sbjct: 1  MSFIDYFAWFVLIFLLLTAVAAFVAMAMAPGYIAKSRNHPWTQAVTVAGWVTLICGFVLW 60

Query: 61 PIALIWAYVDVPQRRSG 77
          P+ALIWAY+D P++  G
Sbjct: 61 PVALIWAYIDTPKKEEG 77


>ref|YP_001768170.1| hypothetical protein M446_1211 [Methylobacterium sp. 4-46]
 gb|ACA15736.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
          Length = 81

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 54/77 (70%)

Query: 1  MSGYDIFAWIVLVILLASAIGVFCIAGWLPGHIAKSRNHPYAQAVTVAGWITLLFGFALW 60
          M   DIFAWIVL++++A+ I  F   G +PG IA+ R HP+AQAVTV  W TL+FGF  W
Sbjct: 3  MPFIDIFAWIVLLVVVATLIATFVALGVMPGRIARRRGHPWAQAVTVGSWATLVFGFVFW 62

Query: 61 PIALIWAYVDVPQRRSG 77
          P+ L+WAYVD P RR  
Sbjct: 63 PLILVWAYVDAPARRDA 79


>ref|YP_578198.1| hypothetical protein Nham_2978 [Nitrobacter hamburgensis X14]
 gb|ABE63738.1| hypothetical protein Nham_2978 [Nitrobacter hamburgensis X14]
          Length = 81

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 63/76 (82%)

Query: 1  MSGYDIFAWIVLVILLASAIGVFCIAGWLPGHIAKSRNHPYAQAVTVAGWITLLFGFALW 60
          MSG DI AW VL+IL+   + VF + G +PG++A+ R+HP+A+AV+VAGW+TL+FGF LW
Sbjct: 1  MSGLDILAWAVLIILVGVVVLVFWLMGSMPGYVARRRHHPWAEAVSVAGWVTLIFGFVLW 60

Query: 61 PIALIWAYVDVPQRRS 76
          P+ALIWAYVDVP RR+
Sbjct: 61 PVALIWAYVDVPARRT 76