BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0060.p         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_569652.1| hypothetical protein RPD_2521 [Rhodopseudomonas...   156   9e-37
ref|YP_002363077.1| hypothetical protein Msil_2796 [Methylocella...   138   3e-31
ref|ZP_08074166.1| hypothetical protein Met49242DRAFT_3554 [Meth...   132   2e-29
ref|NP_947332.1| hypothetical protein RPA1987 [Rhodopseudomonas ...   129   2e-28
ref|YP_001832860.1| hypothetical protein Bind_1741 [Beijerinckia...   103   9e-21

>ref|YP_569652.1| hypothetical protein RPD_2521 [Rhodopseudomonas palustris BisB5]
 gb|ABE39751.1| hypothetical protein RPD_2521 [Rhodopseudomonas palustris BisB5]
          Length = 114

 Score =  156 bits (395), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 79/93 (84%)

Query: 10  LSDAKAQTPLSAYTDANGFIDVQTLTCAQLAGTYQEDADMLAAWYSGWYNGLAKKHYAHI 69
           +S+ +AQ PLSAYTDA G+IDVQ LTCAQLA T+QEDADMLAAWYSGWYNGLAKKH+AHI
Sbjct: 21  ISELRAQVPLSAYTDAKGYIDVQALTCAQLAATFQEDADMLAAWYSGWYNGLAKKHFAHI 80

Query: 70  TRAKSGEHQLIVYCKAHPNVKIIEAIDLLLKNE 102
            R K GEHQ+I+YCK HP  K+I AIDLLLK  
Sbjct: 81  ERVKPGEHQVILYCKQHPTEKVIHAIDLLLKQR 113


>ref|YP_002363077.1| hypothetical protein Msil_2796 [Methylocella silvestris BL2]
 gb|ACK51715.1| conserved hypothetical protein [Methylocella silvestris BL2]
          Length = 120

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 74/90 (82%)

Query: 11  SDAKAQTPLSAYTDANGFIDVQTLTCAQLAGTYQEDADMLAAWYSGWYNGLAKKHYAHIT 70
           + A+  TPLSAY D +G++DVQTLTCAQLAGTYQEDA+ L AWYSGWYNGLAKKH+A+I 
Sbjct: 19  ASAQVATPLSAYADKDGYLDVQTLTCAQLAGTYQEDANYLTAWYSGWYNGLAKKHFANIP 78

Query: 71  RAKSGEHQLIVYCKAHPNVKIIEAIDLLLK 100
           R+K  EH+ IVYCK HP   +IEAI L++K
Sbjct: 79  RSKEAEHETIVYCKTHPEKTVIEAIGLVIK 108


>ref|ZP_08074166.1| hypothetical protein Met49242DRAFT_3554 [Methylocystis sp. ATCC
           49242]
 gb|EFX98215.1| hypothetical protein Met49242DRAFT_3554 [Methylocystis sp. ATCC
           49242]
          Length = 112

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/95 (64%), Positives = 71/95 (74%)

Query: 8   LMLSDAKAQTPLSAYTDANGFIDVQTLTCAQLAGTYQEDADMLAAWYSGWYNGLAKKHYA 67
           +M   A A   L  Y D NG++DVQ LTC QLA TYQEDA+ LA WYSGWYNGLAKKHY 
Sbjct: 14  IMAESASAAVGLDTYVDKNGYLDVQALTCDQLANTYQEDANALAFWYSGWYNGLAKKHYY 73

Query: 68  HITRAKSGEHQLIVYCKAHPNVKIIEAIDLLLKNE 102
           H+TR+K  EH+LIVYCKAH + KII A+D+L K E
Sbjct: 74  HMTRSKGLEHELIVYCKAHRDQKIIHALDVLFKEE 108


>ref|NP_947332.1| hypothetical protein RPA1987 [Rhodopseudomonas palustris CGA009]
 ref|YP_001991196.1| hypothetical protein Rpal_2200 [Rhodopseudomonas palustris TIE-1]
 emb|CAE27428.1| hypothetical protein RPA1987 [Rhodopseudomonas palustris CGA009]
 gb|ACF00721.1| hypothetical protein Rpal_2200 [Rhodopseudomonas palustris TIE-1]
          Length = 109

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 76/101 (75%), Gaps = 2/101 (1%)

Query: 4   VACVLML--SDAKAQTPLSAYTDANGFIDVQTLTCAQLAGTYQEDADMLAAWYSGWYNGL 61
           ++C L L  S A+AQTPL+AY D+ G+I VQ LTCAQLAGTYQEDAD L  WYSGWYNGL
Sbjct: 8   ISCALTLVSSAAEAQTPLTAYADSKGYIHVQELTCAQLAGTYQEDADFLGVWYSGWYNGL 67

Query: 62  AKKHYAHITRAKSGEHQLIVYCKAHPNVKIIEAIDLLLKNE 102
            K +   I R K G H++IV+CKA+   K+I+AID ++KN+
Sbjct: 68  GKHNTIKIDRVKQGIHEVIVHCKANKGKKVIQAIDFVIKNQ 108


>ref|YP_001832860.1| hypothetical protein Bind_1741 [Beijerinckia indica subsp. indica
           ATCC 9039]
 gb|ACB95371.1| conserved hypothetical protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 127

 Score =  103 bits (257), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 1   LALVACVLMLSDAKAQTP----LSAYTDANGFIDVQTLTCAQLAGTYQEDADMLAAWYSG 56
           L+L   +   S   AQTP    L+ + D NGF+++Q LTCA LA T  E+A+ L  WYSG
Sbjct: 13  LSLSLVIAGASSLYAQTPTKAALATHEDQNGFLNLQALTCADLATTKPEEAEYLITWYSG 72

Query: 57  WYNGLAKKHYAHITRAKSGEHQLIVYCKAHPNVKIIEAIDLLLKNE 102
           WY+GL KKH+A ++R ++ EH L  YCK H   K+  A+D+L K E
Sbjct: 73  WYSGLTKKHFARVSRTEADEHHLANYCKEHSEAKVTTALDVLFKKE 118