BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0046.p (344 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771374.1| preprotein translocase subunit SecF [Bradyrhizo... 567 e-160 ref|ZP_01047158.1| SecD/SecF/SecDF export membrane protein [Nitr... 566 e-159 ref|YP_001240350.1| preprotein translocase subunit SecF [Bradyrh... 563 e-158 ref|YP_532642.1| preprotein translocase subunit SecF [Rhodopseud... 560 e-157 ref|YP_001992150.1| preprotein translocase subunit SecF [Rhodops... 557 e-156 >ref|NP_771374.1| preprotein translocase subunit SecF [Bradyrhizobium japonicum USDA 110] dbj|BAC49999.1| protein-export membrane protein [Bradyrhizobium japonicum USDA 110] Length = 339 Score = 567 bits (1462), Expect = e-160, Method: Compositional matrix adjust. Identities = 299/344 (86%), Positives = 316/344 (91%), Gaps = 9/344 (2%) Query: 1 VTHTVLIGLGILIAVLTVVAALGLLPSLRIVPDDTHFDFTRFRRISFPISALLSILAITL 60 + HTVLIGLG+LI +LTVVAALGLLPSLRIVPD+THFDFTRFRRISFPISA LSI+AITL Sbjct: 1 MNHTVLIGLGVLITILTVVAALGLLPSLRIVPDNTHFDFTRFRRISFPISAALSIVAITL 60 Query: 61 FFTHGLNFGIDFKGGTLLEVQAKSGAADIAAMRTTLNGLGLGEVQLQQFGGPAEVLIRVA 120 FFTHGLN GIDFKGGTLLEV+AKSGAADIAAMRTTL+GL LGEVQLQQFGGP VLIRVA Sbjct: 61 FFTHGLNLGIDFKGGTLLEVRAKSGAADIAAMRTTLDGLRLGEVQLQQFGGPENVLIRVA 120 Query: 121 EQPGGDKAQQDAVTKVRGALGESVDYRRVEVVGPRVSGELLAYGMIGLMFAIMGILIYLW 180 EQPGGD AQQ+AV KVR ALG+S++YRRVEV+GPRV+GELLAYGM+GLM AI+ ILIYLW Sbjct: 121 EQPGGDTAQQEAVQKVRTALGDSIEYRRVEVLGPRVAGELLAYGMLGLMLAIVAILIYLW 180 Query: 181 FRFEWQFALGAMIANVHDIVLTIGFMSITQVDFDLTSIAALLTILGYSLNDTVVIYDRIR 240 FRFEWQFALGAMIANVHDIVLTIGFMSI+QVDFDLTSIAALLTILGYSLNDTVVIYDRIR Sbjct: 181 FRFEWQFALGAMIANVHDIVLTIGFMSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIR 240 Query: 241 EMLRRYKKMPMPQLLNESINSTLSRSIITHVTVTLALLALLLFGGQAIHSFTAVMMFGVV 300 EMLRRYKKMPMPQLLNESINSTLSRSIITHVTVTLALLALLLFGG AIHSFTAVMMFGVV Sbjct: 241 EMLRRYKKMPMPQLLNESINSTLSRSIITHVTVTLALLALLLFGGHAIHSFTAVMMFGVV 300 Query: 301 LVGTYTSIFIAAPILIYLGVHTTRGGEAAQDVPARKPDTAAAKK 344 LVGTYTSIFIAAPILIYLGV GE +D PDTA K Sbjct: 301 LVGTYTSIFIAAPILIYLGV-----GEHREDA----PDTATPAK 335 >ref|ZP_01047158.1| SecD/SecF/SecDF export membrane protein [Nitrobacter sp. Nb-311A] gb|EAQ34899.1| SecD/SecF/SecDF export membrane protein [Nitrobacter sp. Nb-311A] Length = 346 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 290/344 (84%), Positives = 310/344 (90%), Gaps = 2/344 (0%) Query: 1 VTHTVLIGLGILIAVLTVVAALGLLPSLRIVPDDTHFDFTRFRRISFPISALLSILAITL 60 +T +L+GLG LI VLT+V+ GLLPSLRIVPDDTHFDFTRFRRISFPISA+LSI+AI L Sbjct: 1 MTQWILLGLGALIVVLTIVSCFGLLPSLRIVPDDTHFDFTRFRRISFPISAVLSIVAIAL 60 Query: 61 FFTHGLNFGIDFKGGTLLEVQAKSGAADIAAMRTTLNGLGLGEVQLQQFGGPAEVLIRVA 120 FFTHGLNFGIDFKGGTLLEVQAKSG ADIA+MRTTL+ L LGEVQLQQFGGP EVLIRVA Sbjct: 61 FFTHGLNFGIDFKGGTLLEVQAKSGEADIASMRTTLSKLDLGEVQLQQFGGPTEVLIRVA 120 Query: 121 EQPGGDKAQQDAVTKVRGALGESVDYRRVEVVGPRVSGELLAYGMIGLMFAIMGILIYLW 180 EQPGGD AQQ AV KVRGALG+SV+YRRVEVVGPRVSGELLAYGM+GLM AI+GIL+YLW Sbjct: 121 EQPGGDAAQQAAVQKVRGALGDSVNYRRVEVVGPRVSGELLAYGMVGLMLAILGILMYLW 180 Query: 181 FRFEWQFALGAMIANVHDIVLTIGFMSITQVDFDLTSIAALLTILGYSLNDTVVIYDRIR 240 FRFEWQFALGAM+ANVHDIVLTIGFMSI+QVDFDLTSIAALLTILGYSLNDTVVIYDRIR Sbjct: 181 FRFEWQFALGAMVANVHDIVLTIGFMSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIR 240 Query: 241 EMLRRYKKMPMPQLLNESINSTLSRSIITHVTVTLALLALLLFGGQAIHSFTAVMMFGVV 300 EMLRRYKKMPMP LLNESINSTLSRSIITH TVTLALLALLLFGG AIHSFTAVM FGVV Sbjct: 241 EMLRRYKKMPMPDLLNESINSTLSRSIITHATVTLALLALLLFGGPAIHSFTAVMTFGVV 300 Query: 301 LVGTYTSIFIAAPILIYLGVHTTRGGEAAQDVPARKPDTAAAKK 344 LVGTYTSIFIAAPILIYLGV R ++ PA+ A +K Sbjct: 301 LVGTYTSIFIAAPILIYLGVGENRA--EVEEKPAKPQKPAKPQK 342 >ref|YP_001240350.1| preprotein translocase subunit SecF [Bradyrhizobium sp. BTAi1] gb|ABQ36444.1| protein translocase subunit secF [Bradyrhizobium sp. BTAi1] Length = 335 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 295/337 (87%), Positives = 313/337 (92%), Gaps = 2/337 (0%) Query: 1 VTHTVLIGLGILIAVLTVVAALGLLPSLRIVPDDTHFDFTRFRRISFPISALLSILAITL 60 +TH VLIGLGILIAVLTVV+ALGLLPSLRIVPDDTHFDFT+FRRISFPISA LSI+AI L Sbjct: 1 MTHWVLIGLGILIAVLTVVSALGLLPSLRIVPDDTHFDFTQFRRISFPISATLSIIAIVL 60 Query: 61 FFTHGLNFGIDFKGGTLLEVQAKSGAADIAAMRTTLNGLGLGEVQLQQFGGPAEVLIRVA 120 FFTHGLNFGIDFKGGTLLEV+AKSG ADIA+MR+ L+ L LGEVQLQQFGGPA+VLIR A Sbjct: 61 FFTHGLNFGIDFKGGTLLEVRAKSGTADIASMRSELSKLNLGEVQLQQFGGPADVLIRFA 120 Query: 121 EQPGGDKAQQDAVTKVRGALGESVDYRRVEVVGPRVSGELLAYGMIGLMFAIMGILIYLW 180 QPGGD AQQ+AV KVRGALG++VDYRRVEV+G RVSGELLA GM+GLM AI+ ILIYLW Sbjct: 121 AQPGGDSAQQEAVNKVRGALGDTVDYRRVEVLGARVSGELLAMGMLGLMLAIVSILIYLW 180 Query: 181 FRFEWQFALGAMIANVHDIVLTIGFMSITQVDFDLTSIAALLTILGYSLNDTVVIYDRIR 240 FRFEWQFALGAMIANVHDIVLTIGFMSI+QVDFDLTSIAALLTILGYSLNDTVVIYDRIR Sbjct: 181 FRFEWQFALGAMIANVHDIVLTIGFMSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIR 240 Query: 241 EMLRRYKKMPMPQLLNESINSTLSRSIITHVTVTLALLALLLFGGQAIHSFTAVMMFGVV 300 EMLRRYKKMPMPQLLNESINSTLSRSIITHVTVTLALLALLLFGG AIHSFTAVMMFGVV Sbjct: 241 EMLRRYKKMPMPQLLNESINSTLSRSIITHVTVTLALLALLLFGGTAIHSFTAVMMFGVV 300 Query: 301 LVGTYTSIFIAAPILIYLGVHTTRGGEAAQDVPARKP 337 LVGTYTSIFIAAPILIYLGV T RG + D P +KP Sbjct: 301 LVGTYTSIFIAAPILIYLGVGTVRGDQV--DEPKKKP 335 >ref|YP_532642.1| preprotein translocase subunit SecF [Rhodopseudomonas palustris BisB18] gb|ABD88323.1| protein translocase subunit secF [Rhodopseudomonas palustris BisB18] Length = 334 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 295/337 (87%), Positives = 312/337 (92%), Gaps = 3/337 (0%) Query: 1 VTHTVLIGLGILIAVLTVVAALGLLPSLRIVPDDTHFDFTRFRRISFPISALLSILAITL 60 +TH +LIGLG +IAVLTVV+ +G LPSLRIVPDDTHFDFT+FRRISFPISALLSI AITL Sbjct: 1 MTHWILIGLGAVIAVLTVVSIMGWLPSLRIVPDDTHFDFTQFRRISFPISALLSIAAITL 60 Query: 61 FFTHGLNFGIDFKGGTLLEVQAKSGAADIAAMRTTLNGLGLGEVQLQQFGGPAEVLIRVA 120 FFTHGLNFGIDFKGGTLLEVQAK+GAADI AMR TL+ LGLG+VQLQQFGGPA+VLIRVA Sbjct: 61 FFTHGLNFGIDFKGGTLLEVQAKTGAADIPAMRATLSALGLGDVQLQQFGGPADVLIRVA 120 Query: 121 EQPGGDKAQQDAVTKVRGALGESVDYRRVEVVGPRVSGELLAYGMIGLMFAIMGILIYLW 180 EQPGGD AQQ+AV KVR ALG++V+YRRVEVVGPRVS ELLAYGM+GLM AI ILIYLW Sbjct: 121 EQPGGDAAQQEAVQKVRAALGDNVEYRRVEVVGPRVSSELLAYGMLGLMLAIFSILIYLW 180 Query: 181 FRFEWQFALGAMIANVHDIVLTIGFMSITQVDFDLTSIAALLTILGYSLNDTVVIYDRIR 240 FRFEWQFALGAMIANVHDIVLTIGFMSITQVDFDLTSIAALLTILGYSLNDTVVIYDRIR Sbjct: 181 FRFEWQFALGAMIANVHDIVLTIGFMSITQVDFDLTSIAALLTILGYSLNDTVVIYDRIR 240 Query: 241 EMLRRYKKMPMPQLLNESINSTLSRSIITHVTVTLALLALLLFGGQAIHSFTAVMMFGVV 300 EMLRRYKKMPMPQLLNESINSTLSRSIITHVTVTLALLALLLFGG AIHSFTAVMMFGVV Sbjct: 241 EMLRRYKKMPMPQLLNESINSTLSRSIITHVTVTLALLALLLFGGHAIHSFTAVMMFGVV 300 Query: 301 LVGTYTSIFIAAPILIYLGVHTTRGGEAAQDVPARKP 337 LVGTYTSIFIAAPILIYLGV R A++ PA KP Sbjct: 301 LVGTYTSIFIAAPILIYLGVGMNR--HDAKE-PASKP 334 >ref|YP_001992150.1| preprotein translocase subunit SecF [Rhodopseudomonas palustris TIE-1] gb|ACF01675.1| protein-export membrane protein SecF [Rhodopseudomonas palustris TIE-1] Length = 372 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 293/341 (85%), Positives = 314/341 (92%), Gaps = 2/341 (0%) Query: 1 VTHTVLIGLGILIAVLTVVAALGLLPSLRIVPDDTHFDFTRFRRISFPISALLSILAITL 60 +TH +L+GLG+LI VLTVV+ G LPSLRIVPD+THFDFTRFRRISFPISA+LSI AITL Sbjct: 1 MTHWILVGLGVLIVVLTVVSIFGWLPSLRIVPDNTHFDFTRFRRISFPISAVLSIAAITL 60 Query: 61 FFTHGLNFGIDFKGGTLLEVQAKSGAADIAAMRTTLNGLGLGEVQLQQFGGPAEVLIRVA 120 FFTHGLNFGIDF+GGTLLEV+A SGAADIA MR TL+ L LG+VQLQQFGGPAEVLIR+A Sbjct: 61 FFTHGLNFGIDFRGGTLLEVRAHSGAADIAGMRETLSKLSLGDVQLQQFGGPAEVLIRIA 120 Query: 121 EQPGGDKAQQDAVTKVRGALGESVDYRRVEVVGPRVSGELLAYGMIGLMFAIMGILIYLW 180 EQPGGD+AQQ AV KVR ALG+SVDYRRVEVVGPRVS ELLA+GM+GLM AI+GIL+YLW Sbjct: 121 EQPGGDQAQQVAVQKVRAALGDSVDYRRVEVVGPRVSSELLAFGMLGLMVAILGILVYLW 180 Query: 181 FRFEWQFALGAMIANVHDIVLTIGFMSITQVDFDLTSIAALLTILGYSLNDTVVIYDRIR 240 FRFEWQFALGAMIANVHDIVLTIGFMSI+QVDFDLTSIAALLTILGYSLNDTVVIYDRIR Sbjct: 181 FRFEWQFALGAMIANVHDIVLTIGFMSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIR 240 Query: 241 EMLRRYKKMPMPQLLNESINSTLSRSIITHVTVTLALLALLLFGGQAIHSFTAVMMFGVV 300 EMLRRYKKMPMPQLLNESINSTLSRSIITHVTVTLALLALLLFGG AIHSFTAVMMFGVV Sbjct: 241 EMLRRYKKMPMPQLLNESINSTLSRSIITHVTVTLALLALLLFGGHAIHSFTAVMMFGVV 300 Query: 301 LVGTYTSIFIAAPILIYLGVHTTRGGEAAQDVPARKPDTAA 341 LVGTYTSIFIAAPILIYLGV T R E A+ PA KP+ A Sbjct: 301 LVGTYTSIFIAAPILIYLGVGTHRLDEPAEK-PA-KPEPVA 339