BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0045.p (533 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771375.1| preprotein translocase subunit SecD [Bradyrhizo... 975 0.0 ref|YP_001240351.1| preprotein translocase subunit SecD [Bradyrh... 960 0.0 ref|YP_001206012.1| preprotein translocase subunit SecD [Bradyrh... 951 0.0 ref|YP_577073.1| preprotein translocase subunit SecD [Nitrobacte... 942 0.0 ref|ZP_01047159.1| SecD/SecF/SecDF export membrane protein [Nitr... 936 0.0 >ref|NP_771375.1| preprotein translocase subunit SecD [Bradyrhizobium japonicum USDA 110] dbj|BAC50000.1| protein-export membrane protein [Bradyrhizobium japonicum USDA 110] Length = 534 Score = 975 bits (2521), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/534 (90%), Positives = 514/534 (96%), Gaps = 1/534 (0%) Query: 1 MLYFTRWRALGIILTALVVCLCAVPNFFPEAQVKTWPAWAQRRLVLGLDLQGGSYLLLEV 60 MLYFTRWRALGIILTAL+VCLCAVPNFFPEAQVKTWPAWAQRRLVLGLDLQGGSYLLLEV Sbjct: 1 MLYFTRWRALGIILTALIVCLCAVPNFFPEAQVKTWPAWAQRRLVLGLDLQGGSYLLLEV 60 Query: 61 DSNYVKKEKLDQIRDDVRKVLREAKIGYTG-LNTRNDAVEVRISKEGDQATALSKLRELS 119 DSNYVKKE+LDQ+RDDVR+ LR+AKIG+TG + RNDA EVRI+KE D AL+KLREL+ Sbjct: 61 DSNYVKKERLDQVRDDVRRTLRDAKIGFTGGVTVRNDAAEVRITKETDVQPALAKLRELA 120 Query: 120 QPLGGLLGSSGQRSLEVADAGGGLIRLTVPQAAITERIRQTIEQSIQIVERRVNELGTVE 179 QPLGGL+GSSGQR LEV DAGGG+IRL++PQAA+ +R+R+TIEQSIQIVERRVNELGTVE Sbjct: 121 QPLGGLMGSSGQRDLEVTDAGGGVIRLSIPQAAMLDRMRKTIEQSIQIVERRVNELGTVE 180 Query: 180 PVIQRQGTDRILVQVPGLQDPTRLKELLGKTAKMEFRMVDSSVSPDQAQQGRLPPDSELL 239 PVIQRQG DRILVQVPGLQDPTRLKELLGKTAKMEFRMVD+SV PDQAQQGRLPP+S+LL Sbjct: 181 PVIQRQGNDRILVQVPGLQDPTRLKELLGKTAKMEFRMVDTSVPPDQAQQGRLPPESDLL 240 Query: 240 MSASPPPVPYVVKKQVLVSGGELSDAQPGFDQRTGEAIVSFKFNTSGARKFAQATAENVG 299 MSASPPP PYVVKKQVLV+GG+L+DAQ FDQRTGE +VSFKFNTSGARKF+QAT ENVG Sbjct: 241 MSASPPPTPYVVKKQVLVAGGDLTDAQASFDQRTGEPVVSFKFNTSGARKFSQATQENVG 300 Query: 300 QPFAIVLDNKVISAPVIREPITGGQGQISGSFTVQSANDLAILMRAGALPAPLTVIEERT 359 PFAIVLDNKVISAPVIREPITGGQGQISG+FTVQSANDLAIL+RAGALPAPLTV+EERT Sbjct: 301 LPFAIVLDNKVISAPVIREPITGGQGQISGNFTVQSANDLAILLRAGALPAPLTVVEERT 360 Query: 360 VGPGLGQDSIEKGELAAYVGSILVIVFMLITYRLFGVFANIAVAINVAMIFGLLSLLNAT 419 VGPGLGQDSIEKGELAAYVGSILVI+FML+TYRLFGVFANIAVAINVAMIFGLLSLLNAT Sbjct: 361 VGPGLGQDSIEKGELAAYVGSILVIIFMLVTYRLFGVFANIAVAINVAMIFGLLSLLNAT 420 Query: 420 LTLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTF 479 LTLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTF Sbjct: 421 LTLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTF 480 Query: 480 IAAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVAGWVRWKRPQTVPI 533 IAAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVAGWVRWKRPQ+VPI Sbjct: 481 IAAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVAGWVRWKRPQSVPI 534 >ref|YP_001240351.1| preprotein translocase subunit SecD [Bradyrhizobium sp. BTAi1] gb|ABQ36445.1| protein-export membrane protein secD [Bradyrhizobium sp. BTAi1] Length = 533 Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/533 (89%), Positives = 509/533 (95%) Query: 1 MLYFTRWRALGIILTALVVCLCAVPNFFPEAQVKTWPAWAQRRLVLGLDLQGGSYLLLEV 60 MLYFTRW+ALGIILTALVVCLCAVPNFFPEA VKTWPAWAQR +VLGLDLQGGSYLLLEV Sbjct: 1 MLYFTRWKALGIILTALVVCLCAVPNFFPEATVKTWPAWAQRHIVLGLDLQGGSYLLLEV 60 Query: 61 DSNYVKKEKLDQIRDDVRKVLREAKIGYTGLNTRNDAVEVRISKEGDQATALSKLRELSQ 120 DSN+VKKE+LD +RDDVR+ LR+AKIGYTGL +R D VEVRI+K+ D TALSKLRELSQ Sbjct: 61 DSNFVKKERLDAVRDDVRRTLRDAKIGYTGLVSRGDGVEVRITKDTDAPTALSKLRELSQ 120 Query: 121 PLGGLLGSSGQRSLEVADAGGGLIRLTVPQAAITERIRQTIEQSIQIVERRVNELGTVEP 180 PLGGLLGSSGQRSLEV+DAGGGLIRLT+PQAAITERIRQTIEQSIQIVERRVNELGTVEP Sbjct: 121 PLGGLLGSSGQRSLEVSDAGGGLIRLTIPQAAITERIRQTIEQSIQIVERRVNELGTVEP 180 Query: 181 VIQRQGTDRILVQVPGLQDPTRLKELLGKTAKMEFRMVDSSVSPDQAQQGRLPPDSELLM 240 VIQRQGTDRILVQVPGLQDPT+LK+LLGKTAKMEFRMVD+SV PDQA QGR+PPDSE+L Sbjct: 181 VIQRQGTDRILVQVPGLQDPTQLKDLLGKTAKMEFRMVDTSVPPDQALQGRVPPDSEVLQ 240 Query: 241 SASPPPVPYVVKKQVLVSGGELSDAQPGFDQRTGEAIVSFKFNTSGARKFAQATAENVGQ 300 SASPP PYVVKKQVLVSGG+LSDAQ GFDQRT E IV+F+FN++G+RKFAQAT ENVGQ Sbjct: 241 SASPPNQPYVVKKQVLVSGGDLSDAQTGFDQRTNEPIVTFRFNSAGSRKFAQATTENVGQ 300 Query: 301 PFAIVLDNKVISAPVIREPITGGQGQISGSFTVQSANDLAILMRAGALPAPLTVIEERTV 360 PFAIVLDNKVISAPVIREPITGG GQISG+FTVQSAN+LAIL+RAGALPAPLTVIEERTV Sbjct: 301 PFAIVLDNKVISAPVIREPITGGSGQISGNFTVQSANELAILLRAGALPAPLTVIEERTV 360 Query: 361 GPGLGQDSIEKGELAAYVGSILVIVFMLITYRLFGVFANIAVAINVAMIFGLLSLLNATL 420 GPGLG DSI KGELA+YVGSILVIVFML+TYRLFGVFANIAV INVAMIFG+LSLLNATL Sbjct: 361 GPGLGADSIAKGELASYVGSILVIVFMLVTYRLFGVFANIAVIINVAMIFGVLSLLNATL 420 Query: 421 TLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTFI 480 TLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTFI Sbjct: 421 TLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTFI 480 Query: 481 AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVAGWVRWKRPQTVPI 533 AAAVLFYIGTGPVRGFAVTLG+GI+TTVFTAFTLTRLIVA WVRWKRPQ+VPI Sbjct: 481 AAAVLFYIGTGPVRGFAVTLGVGILTTVFTAFTLTRLIVAWWVRWKRPQSVPI 533 >ref|YP_001206012.1| preprotein translocase subunit SecD [Bradyrhizobium sp. ORS 278] emb|CAL77787.1| Protein-export membrane protein secD [Bradyrhizobium sp. ORS 278] Length = 533 Score = 951 bits (2459), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/533 (87%), Positives = 506/533 (94%) Query: 1 MLYFTRWRALGIILTALVVCLCAVPNFFPEAQVKTWPAWAQRRLVLGLDLQGGSYLLLEV 60 MLYFTRW+ALGIILTALVVCLCAVPNFFPEA VKTWPAWAQR +VLGLDLQGGSYLLLEV Sbjct: 1 MLYFTRWKALGIILTALVVCLCAVPNFFPEATVKTWPAWAQRHIVLGLDLQGGSYLLLEV 60 Query: 61 DSNYVKKEKLDQIRDDVRKVLREAKIGYTGLNTRNDAVEVRISKEGDQATALSKLRELSQ 120 DSNYVKKE+LD +RDDVR+ LR+AKIGYTGL ++ D VEV+I+K+ D TALSKLR+LSQ Sbjct: 61 DSNYVKKERLDSVRDDVRRTLRDAKIGYTGLTSKGDGVEVKITKDTDVPTALSKLRDLSQ 120 Query: 121 PLGGLLGSSGQRSLEVADAGGGLIRLTVPQAAITERIRQTIEQSIQIVERRVNELGTVEP 180 PLGGLLGSSGQRSLEV+DAG LIRLT+PQAAITER+RQTIEQSIQIVERR+NELGTVEP Sbjct: 121 PLGGLLGSSGQRSLEVSDAGNSLIRLTIPQAAITERVRQTIEQSIQIVERRINELGTVEP 180 Query: 181 VIQRQGTDRILVQVPGLQDPTRLKELLGKTAKMEFRMVDSSVSPDQAQQGRLPPDSELLM 240 VIQRQGTDRILVQVPGLQDPT+LK LLG+TAKMEFRMVD++VSP+QA QGR+PPDSE+L Sbjct: 181 VIQRQGTDRILVQVPGLQDPTQLKNLLGRTAKMEFRMVDTTVSPEQALQGRVPPDSEVLQ 240 Query: 241 SASPPPVPYVVKKQVLVSGGELSDAQPGFDQRTGEAIVSFKFNTSGARKFAQATAENVGQ 300 SA+ P PYVVKKQVLVSGG+LSDAQ GFDQRT E IVSF+FN++GARKFAQAT ENVGQ Sbjct: 241 SATSPNQPYVVKKQVLVSGGDLSDAQTGFDQRTNEPIVSFRFNSAGARKFAQATTENVGQ 300 Query: 301 PFAIVLDNKVISAPVIREPITGGQGQISGSFTVQSANDLAILMRAGALPAPLTVIEERTV 360 PFAIVLDNKVISAPVIREPITGG GQISG+FTVQSAN+LAIL+RAGALPAPLTVIEERTV Sbjct: 301 PFAIVLDNKVISAPVIREPITGGSGQISGNFTVQSANELAILLRAGALPAPLTVIEERTV 360 Query: 361 GPGLGQDSIEKGELAAYVGSILVIVFMLITYRLFGVFANIAVAINVAMIFGLLSLLNATL 420 GPGLG DSI KGELA+YVGSILVIVFML+TYRLFGVFANIAV +NVAMIFG+LSLLNATL Sbjct: 361 GPGLGADSIAKGELASYVGSILVIVFMLVTYRLFGVFANIAVVVNVAMIFGVLSLLNATL 420 Query: 421 TLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTFI 480 TLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTFI Sbjct: 421 TLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTFI 480 Query: 481 AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVAGWVRWKRPQTVPI 533 AAAVLFYIGTGPVRGFAVTLGIGI+TTVFTAFTLTRLIVA WVRWKRPQ+VPI Sbjct: 481 AAAVLFYIGTGPVRGFAVTLGIGILTTVFTAFTLTRLIVAWWVRWKRPQSVPI 533 >ref|YP_577073.1| preprotein translocase subunit SecD [Nitrobacter hamburgensis X14] gb|ABE62613.1| protein-export membrane protein SecD [Nitrobacter hamburgensis X14] Length = 533 Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/533 (86%), Positives = 501/533 (93%) Query: 1 MLYFTRWRALGIILTALVVCLCAVPNFFPEAQVKTWPAWAQRRLVLGLDLQGGSYLLLEV 60 MLYFTRW+AL II+TAL +CLCAVPNFFPEAQVKTWP WAQR LVLGLDLQGGSYLLLEV Sbjct: 1 MLYFTRWKALAIIVTALAICLCAVPNFFPEAQVKTWPKWAQRHLVLGLDLQGGSYLLLEV 60 Query: 61 DSNYVKKEKLDQIRDDVRKVLREAKIGYTGLNTRNDAVEVRISKEGDQATALSKLRELSQ 120 DSNYVKKEKLDQ+RDD RK LR+A+I YTGL +N VEVRISKE + TAL KLRELSQ Sbjct: 61 DSNYVKKEKLDQVRDDARKALRDARIAYTGLAAKNGVVEVRISKEEEFQTALGKLRELSQ 120 Query: 121 PLGGLLGSSGQRSLEVADAGGGLIRLTVPQAAITERIRQTIEQSIQIVERRVNELGTVEP 180 PLGGLLGS+GQRSLEV+ A GGLIR+TVPQAA+T+RIRQ++EQSIQI+E+RVNELGTVEP Sbjct: 121 PLGGLLGSTGQRSLEVSSADGGLIRMTVPQAAVTDRIRQSVEQSIQIIEKRVNELGTVEP 180 Query: 181 VIQRQGTDRILVQVPGLQDPTRLKELLGKTAKMEFRMVDSSVSPDQAQQGRLPPDSELLM 240 +IQRQGTDRILVQVPGLQDPTRLKE+LGKTAKM+FRMVDSSVSP+QA QGR+P DSE+LM Sbjct: 181 LIQRQGTDRILVQVPGLQDPTRLKEILGKTAKMDFRMVDSSVSPEQALQGRVPADSEVLM 240 Query: 241 SASPPPVPYVVKKQVLVSGGELSDAQPGFDQRTGEAIVSFKFNTSGARKFAQATAENVGQ 300 S+ P PYVVKKQVLVSGG+L+DAQPGFD RT E IV+F+FN++GARKFAQAT+ENVGQ Sbjct: 241 SSQAPKTPYVVKKQVLVSGGDLTDAQPGFDSRTSEPIVTFRFNSNGARKFAQATSENVGQ 300 Query: 301 PFAIVLDNKVISAPVIREPITGGQGQISGSFTVQSANDLAILMRAGALPAPLTVIEERTV 360 PFAI+LDN+VISAPVIREPITGG GQISG+FTVQ ANDLAIL+RAGALPAPLT+IEERTV Sbjct: 301 PFAIILDNEVISAPVIREPITGGSGQISGNFTVQEANDLAILLRAGALPAPLTIIEERTV 360 Query: 361 GPGLGQDSIEKGELAAYVGSILVIVFMLITYRLFGVFANIAVAINVAMIFGLLSLLNATL 420 GPGLGQDSIEKGELAAYVGSI+VIVFML+TYRLFGVFANIAVAINVAMIFG+LSLLNATL Sbjct: 361 GPGLGQDSIEKGELAAYVGSIMVIVFMLLTYRLFGVFANIAVAINVAMIFGVLSLLNATL 420 Query: 421 TLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTFI 480 TLPGIAGIVLTVGIAVDSNVLIYERIREE+RGGR AISAIDAGFKRALATILDSNITTFI Sbjct: 421 TLPGIAGIVLTVGIAVDSNVLIYERIREEVRGGRTAISAIDAGFKRALATILDSNITTFI 480 Query: 481 AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVAGWVRWKRPQTVPI 533 AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAF +TRLIVA WVRWKRPQ VPI Sbjct: 481 AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFEVTRLIVATWVRWKRPQNVPI 533 >ref|ZP_01047159.1| SecD/SecF/SecDF export membrane protein [Nitrobacter sp. Nb-311A] gb|EAQ34900.1| SecD/SecF/SecDF export membrane protein [Nitrobacter sp. Nb-311A] Length = 533 Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/533 (85%), Positives = 498/533 (93%) Query: 1 MLYFTRWRALGIILTALVVCLCAVPNFFPEAQVKTWPAWAQRRLVLGLDLQGGSYLLLEV 60 MLYFTRW+AL II+TAL +CLCAVPNFFPEAQVKTWP WAQR LVLGLDLQGGSYLLLEV Sbjct: 1 MLYFTRWKALAIIVTALAICLCAVPNFFPEAQVKTWPKWAQRHLVLGLDLQGGSYLLLEV 60 Query: 61 DSNYVKKEKLDQIRDDVRKVLREAKIGYTGLNTRNDAVEVRISKEGDQATALSKLRELSQ 120 DSNYVKKEKLDQ+RDD RK LR+A+I YTGL +N AVEVRISKE + TAL KLRELSQ Sbjct: 61 DSNYVKKEKLDQVRDDARKTLRDARIAYTGLAIKNGAVEVRISKEEEFQTALGKLRELSQ 120 Query: 121 PLGGLLGSSGQRSLEVADAGGGLIRLTVPQAAITERIRQTIEQSIQIVERRVNELGTVEP 180 PLGGLLGSSGQRSLEV+ A GGL+R+ VPQ A+T+RIRQ++EQSIQI+ERRVNELGTVEP Sbjct: 121 PLGGLLGSSGQRSLEVSSADGGLVRMAVPQTAVTDRIRQSVEQSIQIIERRVNELGTVEP 180 Query: 181 VIQRQGTDRILVQVPGLQDPTRLKELLGKTAKMEFRMVDSSVSPDQAQQGRLPPDSELLM 240 +IQRQG DRILVQVPGLQDPTRLKE+LGKTAKM+FRMVDSSVSPDQA QG++P DSE+LM Sbjct: 181 LIQRQGADRILVQVPGLQDPTRLKEILGKTAKMDFRMVDSSVSPDQAAQGQVPADSEVLM 240 Query: 241 SASPPPVPYVVKKQVLVSGGELSDAQPGFDQRTGEAIVSFKFNTSGARKFAQATAENVGQ 300 S+ P PYVV+KQVLVSGG+L+DAQPGFD RT E IV+F+FN++GARKFAQAT ENVGQ Sbjct: 241 SSQAPKTPYVVRKQVLVSGGDLTDAQPGFDSRTSEPIVTFRFNSNGARKFAQATTENVGQ 300 Query: 301 PFAIVLDNKVISAPVIREPITGGQGQISGSFTVQSANDLAILMRAGALPAPLTVIEERTV 360 PFAI+LDN+VISAPVIREPITGG GQISG+FTVQ ANDLAIL+RAGALPAPLT+IEERTV Sbjct: 301 PFAIILDNEVISAPVIREPITGGSGQISGNFTVQEANDLAILLRAGALPAPLTIIEERTV 360 Query: 361 GPGLGQDSIEKGELAAYVGSILVIVFMLITYRLFGVFANIAVAINVAMIFGLLSLLNATL 420 GPGLGQDSIEKGELAAYVGSI+VI+FML+TYRLFGVFANIAVAINVAMIFG+LSLLNATL Sbjct: 361 GPGLGQDSIEKGELAAYVGSIMVILFMLLTYRLFGVFANIAVAINVAMIFGVLSLLNATL 420 Query: 421 TLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTFI 480 TLPGIAGIVLTVGIAVDSNVLIYERIREE+R GR AISAIDAGFKRALATILDSNITTFI Sbjct: 421 TLPGIAGIVLTVGIAVDSNVLIYERIREEIRAGRTAISAIDAGFKRALATILDSNITTFI 480 Query: 481 AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVAGWVRWKRPQTVPI 533 AAAVLFYIGTGPVRGFAVTLGIGI+TTVFTAF +TRLIVA WVRWKRPQTVPI Sbjct: 481 AAAVLFYIGTGPVRGFAVTLGIGIMTTVFTAFEVTRLIVATWVRWKRPQTVPI 533