BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0044.p         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001240352.1| protein translocase subunit yajC [Bradyrhizo...   218   2e-55
ref|YP_001206013.1| preprotein translocase YajC [Bradyrhizobium ...   213   8e-54
ref|NP_771376.1| preprotein tranlocase protein [Bradyrhizobium j...   212   2e-53
ref|YP_532644.1| preprotein translocase subunit YajC [Rhodopseud...   197   6e-49
ref|YP_002289233.1| preprotein translocase, YajC subunit [Oligot...   194   4e-48

>ref|YP_001240352.1| protein translocase subunit yajC [Bradyrhizobium sp. BTAi1]
 gb|ABQ36446.1| protein translocase subunit yajC [Bradyrhizobium sp. BTAi1]
          Length = 118

 Score =  218 bits (556), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/118 (87%), Positives = 112/118 (94%)

Query: 1   MLITPAFAQAGATGDTNSMLMSLLPFALIFVIMYFLILRPQQKKVRDHADLVKNIRRGDT 60
           MLITPA+AQA   GDTNSMLMSLLPFALIFVIMYFLILRPQQKKV++HADLVKN+RRGDT
Sbjct: 1   MLITPAYAQAAGAGDTNSMLMSLLPFALIFVIMYFLILRPQQKKVKEHADLVKNVRRGDT 60

Query: 61  VVTSGGLVGKVTKVVDDDQIEFEISDGVRVRQMRQMISGVRTKGEPAKGDAKDEASAS 118
           +VT GGLVGKVTKVVDDDQ+EFEI+DGVRVRQMRQMI+GVRTKGEPAK DAKDE +AS
Sbjct: 61  IVTQGGLVGKVTKVVDDDQVEFEIADGVRVRQMRQMITGVRTKGEPAKADAKDEKAAS 118


>ref|YP_001206013.1| preprotein translocase YajC [Bradyrhizobium sp. ORS 278]
 emb|CAL77788.1| preprotein translocase (YajC) [Bradyrhizobium sp. ORS 278]
          Length = 122

 Score =  213 bits (542), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 103/122 (84%), Positives = 112/122 (91%), Gaps = 4/122 (3%)

Query: 1   MLITPAFAQAGATGDTNSMLMSLLPFALIFVIMYFLILRPQQKKVRDHADLVKNIRRGDT 60
           MLITPA+AQA   GDTNSMLMSLLPFALIFVIMYFLILRPQQKKV++HADLVKN+RRGDT
Sbjct: 1   MLITPAYAQAAGAGDTNSMLMSLLPFALIFVIMYFLILRPQQKKVKEHADLVKNVRRGDT 60

Query: 61  VVTSGGLVGKVTKVVDDDQIEFEISDGVRVRQMRQMISGVRTKGEPA----KGDAKDEAS 116
           +VT GGLVGKVTKVVDDDQ+EFEI+DGVRVRQMRQMI+GVRTKGEPA    K DAKDE +
Sbjct: 61  IVTQGGLVGKVTKVVDDDQVEFEIADGVRVRQMRQMITGVRTKGEPAKADSKADAKDEKA 120

Query: 117 AS 118
           AS
Sbjct: 121 AS 122


>ref|NP_771376.1| preprotein tranlocase protein [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50001.1| preprotein tranlocase protein [Bradyrhizobium japonicum USDA 110]
          Length = 125

 Score =  212 bits (539), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/113 (92%), Positives = 108/113 (95%), Gaps = 1/113 (0%)

Query: 1   MLITPAFAQAGATGDTNSMLMSLLPFALIFVIMYFLILRPQQKKVRDHADLVKNIRRGDT 60
           MLITPA+AQA   GDTNSMLMSLLPFALIFVIMYFLILRPQQKKVRDHADLVKNIRRGDT
Sbjct: 1   MLITPAYAQAAGAGDTNSMLMSLLPFALIFVIMYFLILRPQQKKVRDHADLVKNIRRGDT 60

Query: 61  VVTSGGLVGKVTKVVDDDQIEFEISDGVRVRQMRQMISGVRTKGEPAKGDAKD 113
           VVTSGGLVGKVTKVVDDDQIEFEISDGVRVRQMRQMISGVR KGEPAK ++KD
Sbjct: 61  VVTSGGLVGKVTKVVDDDQIEFEISDGVRVRQMRQMISGVRAKGEPAK-ESKD 112


>ref|YP_532644.1| preprotein translocase subunit YajC [Rhodopseudomonas palustris
           BisB18]
 gb|ABD88325.1| protein translocase subunit yajC [Rhodopseudomonas palustris
           BisB18]
          Length = 144

 Score =  197 bits (500), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 95/119 (79%), Positives = 107/119 (89%), Gaps = 1/119 (0%)

Query: 1   MLITPAFAQA-GATGDTNSMLMSLLPFALIFVIMYFLILRPQQKKVRDHADLVKNIRRGD 59
           MLITPAFAQA G+ GDT+SMLMSLLPFALIFVIMYFLILRPQQKKV++HA+LVKN+RRGD
Sbjct: 1   MLITPAFAQAAGSAGDTSSMLMSLLPFALIFVIMYFLILRPQQKKVKEHAELVKNVRRGD 60

Query: 60  TVVTSGGLVGKVTKVVDDDQIEFEISDGVRVRQMRQMISGVRTKGEPAKGDAKDEASAS 118
           T++TSGGLVGKVTKVVDDD +EFE++DGVRVRQMRQMI+GVR KGEP K     EA  S
Sbjct: 61  TIITSGGLVGKVTKVVDDDSLEFEVADGVRVRQMRQMITGVRAKGEPLKEKDVKEAKGS 119


>ref|YP_002289233.1| preprotein translocase, YajC subunit [Oligotropha carboxidovorans
           OM5]
 ref|YP_004632731.1| preprotein translocase YajC [Oligotropha carboxidovorans OM5]
 gb|ACI93368.1| preprotein translocase, YajC subunit [Oligotropha carboxidovorans
           OM5]
 gb|AEI02914.1| preprotein translocase YajC [Oligotropha carboxidovorans OM4]
 gb|AEI06490.1| preprotein translocase YajC [Oligotropha carboxidovorans OM5]
          Length = 113

 Score =  194 bits (492), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/118 (78%), Positives = 105/118 (88%), Gaps = 5/118 (4%)

Query: 1   MLITPAFAQAGATGDTNSMLMSLLPFALIFVIMYFLILRPQQKKVRDHADLVKNIRRGDT 60
           MLITPA+AQA A GDTNSMLMSLLPF +IFVIMYFLILRPQQ+K ++H +LVKNIRRGDT
Sbjct: 1   MLITPAYAQAAAGGDTNSMLMSLLPFVMIFVIMYFLILRPQQRKAKEHTNLVKNIRRGDT 60

Query: 61  VVTSGGLVGKVTKVVDDDQIEFEISDGVRVRQMRQMISGVRTKGEPAKGDAKDEASAS 118
           VVT+GGLVGKVTKVVDD+QIE E+SDGVR+RQMRQMI+GVR+KGEPA      EAS S
Sbjct: 61  VVTNGGLVGKVTKVVDDEQIEMEVSDGVRIRQMRQMIAGVRSKGEPA-----SEASGS 113