BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0042.p         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771383.1| lipoprotein [Bradyrhizobium japonicum USDA 110]...   180   6e-44
ref|YP_001240354.1| putative peptidoglycan-binding LysM [Bradyrh...   179   1e-43
ref|YP_001206016.1| M23/M37 familypeptidase [Bradyrhizobium sp. ...   178   3e-43
ref|YP_532392.1| peptidase M23B [Rhodopseudomonas palustris BisB...   176   9e-43
ref|YP_577069.1| peptidase M23B [Nitrobacter hamburgensis X14] >...   176   9e-43

>ref|NP_771383.1| lipoprotein [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50008.1| bll4743 [Bradyrhizobium japonicum USDA 110]
          Length = 461

 Score =  180 bits (457), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 86/89 (96%), Positives = 87/89 (97%)

Query: 1   VKAAEDGVVAYSGNELKGYGNLVLVRHSNGYVTAYAHASEILVKRGDTIKRGQVIAKSGQ 60
           VKAAEDGVVAYSGNELKGYGNLVLVRHSNGYVTAYAHASE+LVKRGDTIKRGQVIAKSGQ
Sbjct: 373 VKAAEDGVVAYSGNELKGYGNLVLVRHSNGYVTAYAHASELLVKRGDTIKRGQVIAKSGQ 432

Query: 61  SGEAGSPQLHFEIRKGSSPVDPLQFLNGA 89
           SGE  SPQLHFEIRKGSSPVDPLQFLNGA
Sbjct: 433 SGEVASPQLHFEIRKGSSPVDPLQFLNGA 461


>ref|YP_001240354.1| putative peptidoglycan-binding LysM [Bradyrhizobium sp. BTAi1]
 gb|ABQ36448.1| putative peptidoglycan-binding LysM [Bradyrhizobium sp. BTAi1]
          Length = 484

 Score =  179 bits (454), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/89 (94%), Positives = 87/89 (97%)

Query: 1   VKAAEDGVVAYSGNELKGYGNLVLVRHSNGYVTAYAHASEILVKRGDTIKRGQVIAKSGQ 60
           VKAAEDGVVAY+GNELKGYGNLVLVRHSNGYVTAYAHASE++VKRGD IKRGQVIAKSGQ
Sbjct: 396 VKAAEDGVVAYAGNELKGYGNLVLVRHSNGYVTAYAHASELMVKRGDPIKRGQVIAKSGQ 455

Query: 61  SGEAGSPQLHFEIRKGSSPVDPLQFLNGA 89
           SGE GSPQLHFEIRKGSSPVDPLQFLNGA
Sbjct: 456 SGEVGSPQLHFEIRKGSSPVDPLQFLNGA 484


>ref|YP_001206016.1| M23/M37 familypeptidase [Bradyrhizobium sp. ORS 278]
 emb|CAL77791.1| putative peptidoglycan-binding LysM:Peptidase M23/M37 family
           (NlpD/LppB-like) [Bradyrhizobium sp. ORS 278]
          Length = 483

 Score =  178 bits (451), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/89 (94%), Positives = 87/89 (97%)

Query: 1   VKAAEDGVVAYSGNELKGYGNLVLVRHSNGYVTAYAHASEILVKRGDTIKRGQVIAKSGQ 60
           VKAAEDGVVAY+GNELKGYGNLVLVRHSNGYVTAYAHASE++VKRGD IKRGQVIAKSGQ
Sbjct: 395 VKAAEDGVVAYAGNELKGYGNLVLVRHSNGYVTAYAHASELMVKRGDPIKRGQVIAKSGQ 454

Query: 61  SGEAGSPQLHFEIRKGSSPVDPLQFLNGA 89
           SGE GSPQLHFEIRKGSSPVDPLQFLNGA
Sbjct: 455 SGEVGSPQLHFEIRKGSSPVDPLQFLNGA 483


>ref|YP_532392.1| peptidase M23B [Rhodopseudomonas palustris BisB18]
 gb|ABD88073.1| peptidase M23B [Rhodopseudomonas palustris BisB18]
          Length = 464

 Score =  176 bits (447), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 82/89 (92%), Positives = 87/89 (97%)

Query: 1   VKAAEDGVVAYSGNELKGYGNLVLVRHSNGYVTAYAHASEILVKRGDTIKRGQVIAKSGQ 60
           +KAAEDGVVAYSGNELKGYGNLVLVRHSNGYVTAYAHASE++VKRG+TIKRGQ IAKSGQ
Sbjct: 376 IKAAEDGVVAYSGNELKGYGNLVLVRHSNGYVTAYAHASELMVKRGETIKRGQTIAKSGQ 435

Query: 61  SGEAGSPQLHFEIRKGSSPVDPLQFLNGA 89
           SGE GSPQLHFEIRKGS+PVDPLQFLNGA
Sbjct: 436 SGEVGSPQLHFEIRKGSAPVDPLQFLNGA 464


>ref|YP_577069.1| peptidase M23B [Nitrobacter hamburgensis X14]
 gb|ABE62609.1| peptidase M23B [Nitrobacter hamburgensis X14]
          Length = 449

 Score =  176 bits (446), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 84/89 (94%), Positives = 87/89 (97%)

Query: 1   VKAAEDGVVAYSGNELKGYGNLVLVRHSNGYVTAYAHASEILVKRGDTIKRGQVIAKSGQ 60
           VKAAEDGVVAYSGNELKGYGNL+LVRH NGYVTAYAHASE+LVKRGDTIKRGQVIAKSGQ
Sbjct: 361 VKAAEDGVVAYSGNELKGYGNLILVRHPNGYVTAYAHASELLVKRGDTIKRGQVIAKSGQ 420

Query: 61  SGEAGSPQLHFEIRKGSSPVDPLQFLNGA 89
           SGEA SPQLHFEIRKGS+PVDPLQFLNGA
Sbjct: 421 SGEAASPQLHFEIRKGSTPVDPLQFLNGA 449