BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0040.p         (110 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771383.1| lipoprotein [Bradyrhizobium japonicum USDA 110]...    53   2e-05
ref|YP_001240354.1| putative peptidoglycan-binding LysM [Bradyrh...    52   4e-05
ref|YP_001206016.1| M23/M37 familypeptidase [Bradyrhizobium sp. ...    50   2e-04
ref|YP_004108984.1| peptidase M23 [Rhodopseudomonas palustris DX...    49   3e-04
ref|YP_002289238.1| peptidase M23B [Oligotropha carboxidovorans ...    45   0.004

>ref|NP_771383.1| lipoprotein [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50008.1| bll4743 [Bradyrhizobium japonicum USDA 110]
          Length = 461

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 6/73 (8%)

Query: 3   SYTPAPARPQIESTGTVP-HSVAAA-PAGHNGTTIIVGTSDTLEVLXQRLQGTARAVARP 60
           SY P PA+P +E+T TVP  SVAAA PAG  GT IIVGTSDTL+VL +R   T +A+   
Sbjct: 110 SYAP-PAQPHLETTATVPSRSVAAAQPAG--GTKIIVGTSDTLDVLAKRYHVTPQAIL-A 165

Query: 61  AAGHSAPNRIGRG 73
           A G+  P  +  G
Sbjct: 166 ANGYKGPRALSPG 178


>ref|YP_001240354.1| putative peptidoglycan-binding LysM [Bradyrhizobium sp. BTAi1]
 gb|ABQ36448.1| putative peptidoglycan-binding LysM [Bradyrhizobium sp. BTAi1]
          Length = 484

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 39/51 (76%), Gaps = 5/51 (9%)

Query: 3   SYTPAPARPQIESTGTVP-HSVAAA-PAGHNGTTIIVGTSDTLEVLXQRLQ 51
           SY P PA+PQ+E+TG VP  SVAAA P G  GT IIVGTSDTLE+L +R +
Sbjct: 136 SYAP-PAQPQLETTGAVPPRSVAAARPTG--GTKIIVGTSDTLEILAKRYR 183


>ref|YP_001206016.1| M23/M37 familypeptidase [Bradyrhizobium sp. ORS 278]
 emb|CAL77791.1| putative peptidoglycan-binding LysM:Peptidase M23/M37 family
           (NlpD/LppB-like) [Bradyrhizobium sp. ORS 278]
          Length = 483

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 41/53 (77%), Gaps = 5/53 (9%)

Query: 3   SYTPAPARPQIESTGTVP-HSVAAA-PAGHNGTTIIVGTSDTLEVLXQRLQGT 53
           +Y P PA+PQ+E+TG VP  S+AAA P+G  GT IIVGTSDTL+VL +R + T
Sbjct: 133 AYAP-PAQPQLETTGAVPPRSIAAARPSG--GTKIIVGTSDTLDVLAKRYRVT 182


>ref|YP_004108984.1| peptidase M23 [Rhodopseudomonas palustris DX-1]
 gb|ADU44251.1| Peptidase M23 [Rhodopseudomonas palustris DX-1]
          Length = 479

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 45/78 (57%), Gaps = 12/78 (15%)

Query: 3   SYTPAPARPQIESTGTV--PHSVAAAPAGHN--------GTTIIVGTSDTLEVLXQRLQG 52
           SY P P  P IESTGTV  P SVAAA             GTTIIVGTSDTLE+L QR + 
Sbjct: 118 SYEPPPRAP-IESTGTVQAPRSVAAARPMPAAPAPAPAAGTTIIVGTSDTLEILAQRYRV 176

Query: 53  TARAVARPAAGHSAPNRI 70
           +   + R A G+  P R+
Sbjct: 177 STAEILR-ANGYKGPRRL 193


>ref|YP_002289238.1| peptidase M23B [Oligotropha carboxidovorans OM5]
 ref|YP_004632727.1| peptidase M23 [Oligotropha carboxidovorans OM5]
 gb|ACI93373.1| peptidase M23B [Oligotropha carboxidovorans OM5]
 gb|AEI02910.1| peptidase M23 [Oligotropha carboxidovorans OM4]
 gb|AEI06486.1| peptidase M23 [Oligotropha carboxidovorans OM5]
          Length = 442

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 7/70 (10%)

Query: 1   VSSYTPAPARPQIESTGTV--PHSVAAA-PAGHNGTTIIVGTSDTLEVLXQRLQGTARAV 57
           ++SYTP PA   I+ TG+V  P SVAA  P G  GT IIVGTSDT+E+L +R   +   +
Sbjct: 100 MASYTP-PASNPIQHTGSVNAPRSVAATRPEG--GTKIIVGTSDTMEILARRYNVSVADI 156

Query: 58  ARPAAGHSAP 67
            R A G+  P
Sbjct: 157 VR-ANGYRGP 165