BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0033.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771388.1| seryl-tRNA synthetase [Bradyrhizobium japonicum... 414 e-114 ref|YP_001206021.1| seryl-tRNA synthetase [Bradyrhizobium sp. OR... 397 e-109 ref|YP_001240359.1| seryl-tRNA synthetase [Bradyrhizobium sp. BT... 392 e-107 ref|YP_577065.1| seryl-tRNA synthetase [Nitrobacter hamburgensis... 375 e-102 ref|YP_486355.1| seryl-tRNA synthetase [Rhodopseudomonas palustr... 345 2e-93 >ref|NP_771388.1| seryl-tRNA synthetase [Bradyrhizobium japonicum USDA 110] sp|Q89L00.1|SYS_BRAJA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase dbj|BAC50013.1| seryl-tRNA synthetase [Bradyrhizobium japonicum USDA 110] Length = 443 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 211/243 (86%), Positives = 227/243 (93%), Gaps = 1/243 (0%) Query: 1 MHDIKAIRDNPTAFDDGLKRRGLEALSPSLLAIDEKRRAAILASEQAQARRNAASKEIGE 60 MHDIK+IRDNP AFD GL RRGL+ LS SLLAIDE+RRAAILASEQAQARRNAASKEIG+ Sbjct: 1 MHDIKSIRDNPQAFDAGLARRGLKPLSASLLAIDERRRAAILASEQAQARRNAASKEIGD 60 Query: 61 AKKAKDEARAAKLMAEVAELKTTMPELELAAKSSDDELTKELSSIPNLPLDEVPDGTDEH 120 AKKAKDEARAA LMAEVAELKTTMP+LE AAK++D+ELTKELS+IPN+P DEVPDG DEH Sbjct: 61 AKKAKDEARAATLMAEVAELKTTMPQLEAAAKAADEELTKELSAIPNIPFDEVPDGVDEH 120 Query: 121 GNVQHHVFGKKRDYGFAPKLHDDLGTALGDMDFEAAAKLSGARFVVLKKGLARLERAIGQ 180 GNVQHHVFG KR+YGFAPKLHDDLG ALG MDFEAAAKLSGARFVVLKKGLARLERAIGQ Sbjct: 121 GNVQHHVFGNKRNYGFAPKLHDDLGNALGYMDFEAAAKLSGARFVVLKKGLARLERAIGQ 180 Query: 181 FMLDLHTGEHGYTEINPPLLVRDAVMFGTGQLPKFEDDQFWAIKGELLAAPDAD-LRSER 239 FMLDLHT EHGYTEINPPLLVR+ VMFGTGQLPKFEDDQFWAIKGELLA+PD + L++ER Sbjct: 181 FMLDLHTTEHGYTEINPPLLVRNEVMFGTGQLPKFEDDQFWAIKGELLASPDHERLKTER 240 Query: 240 LGL 242 LGL Sbjct: 241 LGL 243 >ref|YP_001206021.1| seryl-tRNA synthetase [Bradyrhizobium sp. ORS 278] sp|A4YV70.1|SYS_BRASO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase emb|CAL77796.1| Seryl-tRNA synthetase (Serine--tRNA ligase) [Bradyrhizobium sp. ORS 278] Length = 442 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/242 (80%), Positives = 215/242 (88%), Gaps = 1/242 (0%) Query: 1 MHDIKAIRDNPTAFDDGLKRRGLEALSPSLLAIDEKRRAAILASEQAQARRNAASKEIGE 60 MHDIK+IRDNP FD L RRGL LS LLAIDE+RRAAILASEQAQARRNAAS+EIGE Sbjct: 1 MHDIKSIRDNPQDFDAALTRRGLSPLSSQLLAIDERRRAAILASEQAQARRNAASREIGE 60 Query: 61 AKKAKDEARAAKLMAEVAELKTTMPELELAAKSSDDELTKELSSIPNLPLDEVPDGTDEH 120 AKKAKDE RA+ LM EVA+LKTTMPELE AAK +D+EL +ELS+IPNLPLDEVPDG DEH Sbjct: 61 AKKAKDEGRASALMEEVAKLKTTMPELEAAAKQADEELARELSAIPNLPLDEVPDGKDEH 120 Query: 121 GNVQHHVFGKKRDYGFAPKLHDDLGTALGDMDFEAAAKLSGARFVVLKKGLARLERAIGQ 180 NV+ HVFG +R+Y FAPK HDD+GTALG MDFE+AAKLSGARFVVLKKGLARLERAIGQ Sbjct: 121 DNVERHVFGARRNYAFAPKAHDDIGTALG-MDFESAAKLSGARFVVLKKGLARLERAIGQ 179 Query: 181 FMLDLHTGEHGYTEINPPLLVRDAVMFGTGQLPKFEDDQFWAIKGELLAAPDADLRSERL 240 FMLDLHT EHGYTE+NPPLLVR+ VMFGTGQLPKFEDDQFWA++GELL APD L++ERL Sbjct: 180 FMLDLHTTEHGYTEVNPPLLVRNDVMFGTGQLPKFEDDQFWAVRGELLIAPDERLKAERL 239 Query: 241 GL 242 GL Sbjct: 240 GL 241 >ref|YP_001240359.1| seryl-tRNA synthetase [Bradyrhizobium sp. BTAi1] sp|A5EJV9.1|SYS_BRASB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase gb|ABQ36453.1| seryl-tRNA synthetase [Bradyrhizobium sp. BTAi1] Length = 442 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/242 (79%), Positives = 214/242 (88%), Gaps = 1/242 (0%) Query: 1 MHDIKAIRDNPTAFDDGLKRRGLEALSPSLLAIDEKRRAAILASEQAQARRNAASKEIGE 60 MHDIK+IRDNP FD L RRGL S LLAIDE+RRAAILASEQAQARRNAASKEIGE Sbjct: 1 MHDIKSIRDNPQGFDAALTRRGLSPQSSHLLAIDERRRAAILASEQAQARRNAASKEIGE 60 Query: 61 AKKAKDEARAAKLMAEVAELKTTMPELELAAKSSDDELTKELSSIPNLPLDEVPDGTDEH 120 AKKAKD+ARA+ LM EVA+LKTTMPELE AAK +D+EL +ELS+IPNLPLDEVPDG DEH Sbjct: 61 AKKAKDDARASALMEEVAKLKTTMPELEAAAKQADEELARELSAIPNLPLDEVPDGKDEH 120 Query: 121 GNVQHHVFGKKRDYGFAPKLHDDLGTALGDMDFEAAAKLSGARFVVLKKGLARLERAIGQ 180 NV+ HVFG +R+Y FAP+ HD++G ALG MDFE+AAKLSGARFVVLKKGLARLERAIGQ Sbjct: 121 DNVERHVFGARRNYAFAPRPHDEIGAALG-MDFESAAKLSGARFVVLKKGLARLERAIGQ 179 Query: 181 FMLDLHTGEHGYTEINPPLLVRDAVMFGTGQLPKFEDDQFWAIKGELLAAPDADLRSERL 240 FMLDLHT EHGYTEINPPLLVR+ VMFGTGQLPKFEDDQFWA++GELL APD L++ERL Sbjct: 180 FMLDLHTTEHGYTEINPPLLVRNDVMFGTGQLPKFEDDQFWAVRGELLIAPDERLKTERL 239 Query: 241 GL 242 GL Sbjct: 240 GL 241 >ref|YP_577065.1| seryl-tRNA synthetase [Nitrobacter hamburgensis X14] sp|Q1QME2.1|SYS_NITHX RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase gb|ABE62605.1| seryl-tRNA synthetase [Nitrobacter hamburgensis X14] Length = 470 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/224 (84%), Positives = 203/224 (90%) Query: 1 MHDIKAIRDNPTAFDDGLKRRGLEALSPSLLAIDEKRRAAILASEQAQARRNAASKEIGE 60 MHDIKAIRDNP AFD LKRRGL LS SLLAIDEKRRAAILASEQAQARRNAASKEIGE Sbjct: 1 MHDIKAIRDNPAAFDAALKRRGLAPLSSSLLAIDEKRRAAILASEQAQARRNAASKEIGE 60 Query: 61 AKKAKDEARAAKLMAEVAELKTTMPELELAAKSSDDELTKELSSIPNLPLDEVPDGTDEH 120 AKKAKDEARAAKLMAEVAELKT+MPE++ AAK++D++L K L+ IPNLPLDEVPDGTDEH Sbjct: 61 AKKAKDEARAAKLMAEVAELKTSMPEMDAAAKAADEKLRKALAEIPNLPLDEVPDGTDEH 120 Query: 121 GNVQHHVFGKKRDYGFAPKLHDDLGTALGDMDFEAAAKLSGARFVVLKKGLARLERAIGQ 180 GN+QHHVFGKKRDY F PK H+DLG ALGDMDFEAAAKLSGARFVVLK+GLARLERAIGQ Sbjct: 121 GNIQHHVFGKKRDYAFTPKPHEDLGGALGDMDFEAAAKLSGARFVVLKRGLARLERAIGQ 180 Query: 181 FMLDLHTGEHGYTEINPPLLVRDAVMFGTGQLPKFEDDQFWAIK 224 F LD+HTGEHGYTE+NPPLLVRD MFGT QLPKF +DQF IK Sbjct: 181 FFLDVHTGEHGYTEVNPPLLVRDDAMFGTAQLPKFAEDQFDFIK 224 >ref|YP_486355.1| seryl-tRNA synthetase [Rhodopseudomonas palustris HaA2] sp|Q2IWG6.1|SYS_RHOP2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase gb|ABD07444.1| seryl-tRNA synthetase [Rhodopseudomonas palustris HaA2] Length = 476 Score = 345 bits (886), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 171/227 (75%), Positives = 186/227 (81%) Query: 1 MHDIKAIRDNPTAFDDGLKRRGLEALSPSLLAIDEKRRAAILASEQAQARRNAASKEIGE 60 MHDIKAIRDNP AFD RRGL ++ SL+ +DE RRAAIL SE+AQARRNAASKEIG+ Sbjct: 1 MHDIKAIRDNPQAFDAAFTRRGLAPIADSLIKLDETRRAAILESEKAQARRNAASKEIGD 60 Query: 61 AKKAKDEARAAKLMAEVAELKTTMPELELAAKSSDDELTKELSSIPNLPLDEVPDGTDEH 120 AKKAKD ARA LMAEVAELKTTMP LE A K +D+ L K LS IPNLPLDEVP+G DEH Sbjct: 61 AKKAKDNARADALMAEVAELKTTMPALEAAVKEADEALKKALSEIPNLPLDEVPEGADEH 120 Query: 121 GNVQHHVFGKKRDYGFAPKLHDDLGTALGDMDFEAAAKLSGARFVVLKKGLARLERAIGQ 180 GNV HH FG KRDY F PK H DLG ALG MDFEAAAK+SGARFVVLKKGLARLERAIGQ Sbjct: 121 GNVDHHRFGAKRDYAFTPKAHYDLGEALGMMDFEAAAKISGARFVVLKKGLARLERAIGQ 180 Query: 181 FMLDLHTGEHGYTEINPPLLVRDAVMFGTGQLPKFEDDQFWAIKGEL 227 F LD+HTGEHGYTE+NPPLLVRD MFGT QLPKF +DQF + E+ Sbjct: 181 FFLDVHTGEHGYTEVNPPLLVRDDAMFGTAQLPKFREDQFQTVTEEV 227