BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0028.p (276 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001240363.1| condensin subunit ScpB [Bradyrhizobium sp. B... 385 e-105 ref|YP_001206025.1| hypothetical protein BRADO4048 [Bradyrhizobi... 382 e-104 ref|NP_771392.1| hypothetical protein bll4752 [Bradyrhizobium ja... 365 4e-99 ref|ZP_07028133.1| chromosome segregation and condensation prote... 363 1e-98 ref|YP_569920.1| chromosome segregation and condensation protein... 362 3e-98 >ref|YP_001240363.1| condensin subunit ScpB [Bradyrhizobium sp. BTAi1] gb|ABQ36457.1| condensin subunit ScpB [Bradyrhizobium sp. BTAi1] Length = 385 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/212 (89%), Positives = 205/212 (96%), Gaps = 1/212 (0%) Query: 2 DPVARPEELRLLEALLFASAEPIDQATLAKRMPDGVDVKAALAQLQAEYAPRGVNLVRVA 61 +P RPEELR+LEALLFASAEP++QATLAKRMP+GVD+KAALAQLQAEYA RGVNLVRVA Sbjct: 19 EPEVRPEELRILEALLFASAEPLEQATLAKRMPEGVDIKAALAQLQAEYANRGVNLVRVA 78 Query: 62 NKWTFRTAGDLSWLMTRESTETRKLSRAAIEVLAIVAYHQPVTRAEIEEIRGVVTSKGTI 121 NKWTFRTAGDL+WLMTRESTETRKLSRAAIEVLAIVAYHQPVTRAEIEEIRGVVTSKGT+ Sbjct: 79 NKWTFRTAGDLAWLMTRESTETRKLSRAAIEVLAIVAYHQPVTRAEIEEIRGVVTSKGTL 138 Query: 122 DVLLETGWIRPRGRRKTPGRPLTFGTTDAFLSQFSLEALGDLPGLEELKGTGLLDSRLPT 181 DVLLETGWI+PRGRRKTPGRPLTFGTTDAFL+QFSLE LGDLPGLEELKGTGLLDSRLPT Sbjct: 139 DVLLETGWIKPRGRRKTPGRPLTFGTTDAFLAQFSLETLGDLPGLEELKGTGLLDSRLPT 198 Query: 182 GFSVPSPSDDATLREDEEPLEPGDTLELLLAP 213 GF+VP+PSDD TLR+DEEPL+PGD L+L LAP Sbjct: 199 GFTVPTPSDDPTLRDDEEPLDPGD-LDLALAP 229 >ref|YP_001206025.1| hypothetical protein BRADO4048 [Bradyrhizobium sp. ORS 278] emb|CAL77800.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 389 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/204 (90%), Positives = 198/204 (97%) Query: 2 DPVARPEELRLLEALLFASAEPIDQATLAKRMPDGVDVKAALAQLQAEYAPRGVNLVRVA 61 +P RPE LR+LEALLFASAEP++QATLAKRMPDGVD+KAALAQLQA+YA RGVNLVRVA Sbjct: 28 EPEVRPEALRILEALLFASAEPLEQATLAKRMPDGVDIKAALAQLQADYANRGVNLVRVA 87 Query: 62 NKWTFRTAGDLSWLMTRESTETRKLSRAAIEVLAIVAYHQPVTRAEIEEIRGVVTSKGTI 121 NKW+FRTAGDL+WLMTRESTETRKLSRAAIEVLAIVAYHQPVTRAEIEEIRGVVTSKGT+ Sbjct: 88 NKWSFRTAGDLAWLMTRESTETRKLSRAAIEVLAIVAYHQPVTRAEIEEIRGVVTSKGTL 147 Query: 122 DVLLETGWIRPRGRRKTPGRPLTFGTTDAFLSQFSLEALGDLPGLEELKGTGLLDSRLPT 181 DVLLETGWI+PRGRRKTPGRPLTFGTTDAFL+QFSLE LGDLPGLEELKGTGLLDSRLPT Sbjct: 148 DVLLETGWIKPRGRRKTPGRPLTFGTTDAFLTQFSLETLGDLPGLEELKGTGLLDSRLPT 207 Query: 182 GFSVPSPSDDATLREDEEPLEPGD 205 GF+VP+PSDD TLREDEEPL+PGD Sbjct: 208 GFTVPTPSDDPTLREDEEPLDPGD 231 >ref|NP_771392.1| hypothetical protein bll4752 [Bradyrhizobium japonicum USDA 110] dbj|BAC50017.1| bll4752 [Bradyrhizobium japonicum USDA 110] Length = 257 Score = 365 bits (937), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 191/215 (88%), Positives = 206/215 (95%) Query: 5 ARPEELRLLEALLFASAEPIDQATLAKRMPDGVDVKAALAQLQAEYAPRGVNLVRVANKW 64 ARPEELRLLEALLFAS+EP+D ATLAKRMPDGVDVKAAL QLQA+YA RGVNLVRVANKW Sbjct: 28 ARPEELRLLEALLFASSEPLDTATLAKRMPDGVDVKAALEQLQADYASRGVNLVRVANKW 87 Query: 65 TFRTAGDLSWLMTRESTETRKLSRAAIEVLAIVAYHQPVTRAEIEEIRGVVTSKGTIDVL 124 TFRTAGDL+WLMTRESTETR+LSRAAIEVLAI+AYHQPVTRAEIEEIRGVVTSKGT+DVL Sbjct: 88 TFRTAGDLAWLMTRESTETRRLSRAAIEVLAIIAYHQPVTRAEIEEIRGVVTSKGTLDVL 147 Query: 125 LETGWIRPRGRRKTPGRPLTFGTTDAFLSQFSLEALGDLPGLEELKGTGLLDSRLPTGFS 184 LETGWI+PRGRRKTPGRPLTFGTT+ FLSQF+LE LGDLPGLEELKGTGLLDSRLPTGFS Sbjct: 148 LETGWIKPRGRRKTPGRPLTFGTTEDFLSQFTLEQLGDLPGLEELKGTGLLDSRLPTGFS 207 Query: 185 VPSPSDDATLREDEEPLEPGDTLELLLAPAVEPEA 219 VP+PSDD LREDE+PLEPG+ L+L LAPAVEPE+ Sbjct: 208 VPTPSDDPQLREDEDPLEPGEDLDLALAPAVEPES 242 >ref|ZP_07028133.1| chromosome segregation and condensation protein, ScpB [Afipia sp. 1NLS2] gb|EFI50123.1| chromosome segregation and condensation protein, ScpB [Afipia sp. 1NLS2] Length = 251 Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 181/220 (82%), Positives = 199/220 (90%), Gaps = 2/220 (0%) Query: 5 ARPEELRLLEALLFASAEPIDQATLAKRMPDGVDVKAALAQLQAEYAPRGVNLVRVANKW 64 RPEELRLLEA+LFAS EP+D A+LA+R+P+ DVKA L QLQA+YA RGVNLVRVANKW Sbjct: 28 VRPEELRLLEAMLFASTEPLDVASLARRLPEDADVKALLEQLQADYAMRGVNLVRVANKW 87 Query: 65 TFRTAGDLSWLMTRESTETRKLSRAAIEVLAIVAYHQPVTRAEIEEIRGVVTSKGTIDVL 124 TFRTA DLSWLMTRESTETR+LSRAAIE LAI+AYHQPVTRAEIEEIRGV+TSKGTIDVL Sbjct: 88 TFRTAADLSWLMTRESTETRRLSRAAIETLAIIAYHQPVTRAEIEEIRGVITSKGTIDVL 147 Query: 125 LETGWIRPRGRRKTPGRPLTFGTTDAFLSQFSLEALGDLPGLEELKGTGLLDSRLPTGFS 184 LETGWIRPRGRRKTPGRPLTFGTT+AFLSQFSLE LGDLPGL+ELKG+GLLD+RLPTGFS Sbjct: 148 LETGWIRPRGRRKTPGRPLTFGTTEAFLSQFSLEQLGDLPGLDELKGSGLLDTRLPTGFS 207 Query: 185 VPSPSDDATLREDEEPLEPGDTLELLLAPAVEPEAEEPKA 224 VPSPSDD LR+DEEPLE GD L+L LAP P+ EEP + Sbjct: 208 VPSPSDDPALRDDEEPLESGDELQLTLAPI--PDPEEPNS 245 >ref|YP_569920.1| chromosome segregation and condensation protein ScpB [Rhodopseudomonas palustris BisB5] gb|ABE40019.1| condensin subunit ScpB [Rhodopseudomonas palustris BisB5] Length = 389 Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 187/218 (85%), Positives = 206/218 (94%), Gaps = 1/218 (0%) Query: 3 PVARPEELRLLEALLFASAEPIDQATLAKRMPDGVDVKAALAQLQAEYAPRGVNLVRVAN 62 P RPEELRLLEALLFAS EP+DQ+ LAKRMPDGVDVKAALAQLQA+YA RGVNLVR+AN Sbjct: 27 PQTRPEELRLLEALLFASTEPLDQSALAKRMPDGVDVKAALAQLQADYAHRGVNLVRIAN 86 Query: 63 KWTFRTAGDLSWLMTRESTETRKLSRAAIEVLAIVAYHQPVTRAEIEEIRGVVTSKGTID 122 KWTFRTAGDL+WLMTRE+TETRKLSRAAIE+LAI+AYHQP+TRAEIE+IRGVVTSKGT+D Sbjct: 87 KWTFRTAGDLAWLMTRETTETRKLSRAAIEMLAIIAYHQPITRAEIEDIRGVVTSKGTLD 146 Query: 123 VLLETGWIRPRGRRKTPGRPLTFGTTDAFLSQFSLEALGDLPGLEELKGTGLLDSRLPTG 182 VLLETGWIRPRGRRKTPGRPLTFGTT+AFLSQFSLEALGDLPGLEELKG+GLLD+RLPTG Sbjct: 147 VLLETGWIRPRGRRKTPGRPLTFGTTEAFLSQFSLEALGDLPGLEELKGSGLLDTRLPTG 206 Query: 183 FSVPSPSDDATLREDEEPLEPGDTLELLLAPAVEPEAE 220 F+VP+PSDD TLREDE+PLE GD LEL LAP +PE + Sbjct: 207 FNVPTPSDDPTLREDEDPLESGD-LELALAPIADPETD 243