BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0017.p (377 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_486370.1| secretion protein HlyD [Rhodopseudomonas palust... 563 e-158 ref|YP_781541.1| RND family efflux transporter MFP subunit [Rhod... 550 e-154 ref|YP_532367.1| secretion protein HlyD [Rhodopseudomonas palust... 548 e-154 ref|YP_569932.1| secretion protein HlyD [Rhodopseudomonas palust... 544 e-152 ref|ZP_08629729.1| putative RND efflux membrane fusion protein [... 500 e-139 >ref|YP_486370.1| secretion protein HlyD [Rhodopseudomonas palustris HaA2] gb|ABD07459.1| Secretion protein HlyD [Rhodopseudomonas palustris HaA2] Length = 376 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 281/377 (74%), Positives = 317/377 (84%), Gaps = 1/377 (0%) Query: 1 MKKRNLVLTVAVLGIAAGAAYMTRTSWMGGGAATAQGTARPRVVSVDLAKAERKSVPVDV 60 M KR ++ LGI+AGAA + + W AT + R RVV+VDL KA RK +PVDV Sbjct: 1 MAKRRWIIIACFLGISAGAAVVLQPYWSKSQVAT-KSAPRTRVVTVDLDKAVRKPIPVDV 59 Query: 61 NAIGQVTPISSVALKSRLETTIVSVHFEDGARVNEGDLLFTLDARQIDAQIEQAEGVLAR 120 +AIG VTPISSVALKSRLETTIV VHFEDGARV +GDLLFTLD+RQIDAQIEQAEG LAR Sbjct: 60 DAIGMVTPISSVALKSRLETTIVDVHFEDGARVKQGDLLFTLDSRQIDAQIEQAEGNLAR 119 Query: 121 DQAQLEGAQRDLRRYTELVGKGATTQVNLDNAKTQSDVLIGTIKADRFALENLRVQKSYT 180 D+AQL GA+RDLRRY EL+GKGATTQVNLDNAKTQ+D+L GTI+ + AL+NLRVQKSYT Sbjct: 120 DRAQLAGAERDLRRYNELIGKGATTQVNLDNAKTQADILAGTIRGAQSALDNLRVQKSYT 179 Query: 181 VIRAPFAGRISAANVKVGNFVRPADTQPLAVINQMAPVYVTFAIPQRALVDLRDAMGKGD 240 IRAPF+GRISAANVK+GNFVRPADT PLA INQMAPVYVTFA+PQR LVDLRDAM G Sbjct: 180 AIRAPFSGRISAANVKIGNFVRPADTAPLATINQMAPVYVTFAVPQRVLVDLRDAMKAGA 239 Query: 241 SKVIATIPGHQRSERGKVAMVENAVDATTGMVTVRGIMNNESETLWPGTIVQTKLIIRSE 300 +KV+ATIPG RSE GKVAMVEN VDATTGMVTVRG+M N +ETLWPGT+V TKL +R+E Sbjct: 240 TKVVATIPGSGRSEEGKVAMVENTVDATTGMVTVRGVMENSNETLWPGTLVNTKLTVRTE 299 Query: 301 DAVVVPTVAVQRSQNGNFVFVVKDGVAKVQPVKVDRTFQGSSVISDGLAGDESVVVDGQL 360 +AV VPTVAVQRSQ GNFVFV+K+GVA VQPV V RTF G SVI+DGLAG E VV DGQL Sbjct: 300 EAVAVPTVAVQRSQGGNFVFVIKNGVAHVQPVTVSRTFMGESVITDGLAGGEDVVTDGQL 359 Query: 361 LLSEGSRVELRARKAGA 377 LLSEG+RVE R+R+AGA Sbjct: 360 LLSEGTRVEPRSRRAGA 376 >ref|YP_781541.1| RND family efflux transporter MFP subunit [Rhodopseudomonas palustris BisA53] gb|ABJ06561.1| efflux transporter, RND family, MFP subunit [Rhodopseudomonas palustris BisA53] Length = 376 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 280/377 (74%), Positives = 326/377 (86%), Gaps = 1/377 (0%) Query: 1 MKKRNLVLTVAVLGIAAGAAYMTRTSWMGGGAATAQGTARPRVVSVDLAKAERKSVPVDV 60 M KRNLV+ V VLG+ AAY++R SW+G GA +AQ R RVVSV+ A+AER+ VP+DV Sbjct: 1 MSKRNLVIIVCVLGVVGLAAYLSRASWIGNGA-SAQAPPRARVVSVETARAERRPVPIDV 59 Query: 61 NAIGQVTPISSVALKSRLETTIVSVHFEDGARVNEGDLLFTLDARQIDAQIEQAEGVLAR 120 + IG VTPISSVALKSRLETTIV+VHF+DGARV + +LLFTLD+RQIDAQIEQAEGVLAR Sbjct: 60 DGIGIVTPISSVALKSRLETTIVAVHFQDGARVEKDELLFTLDSRQIDAQIEQAEGVLAR 119 Query: 121 DQAQLEGAQRDLRRYTELVGKGATTQVNLDNAKTQSDVLIGTIKADRFALENLRVQKSYT 180 D AQL GA+RD +R+ EL+GKGATTQVNLDNA TQ+D+L GTI+AD+ AL+NL+VQKS+T Sbjct: 120 DTAQLAGARRDAKRFAELIGKGATTQVNLDNANTQADILAGTIQADQSALDNLKVQKSFT 179 Query: 181 VIRAPFAGRISAANVKVGNFVRPADTQPLAVINQMAPVYVTFAIPQRALVDLRDAMGKGD 240 IRAPFAGRISAANVKVGNFVRPADT PLA INQMAPVYVTF++PQR LVDLR+AM Sbjct: 180 EIRAPFAGRISAANVKVGNFVRPADTAPLATINQMAPVYVTFSVPQRVLVDLREAMAADS 239 Query: 241 SKVIATIPGHQRSERGKVAMVENAVDATTGMVTVRGIMNNESETLWPGTIVQTKLIIRSE 300 ++V+ATIPG RSE GKVAMVEN VDA TGMVTVRGIM+N SETLWPGT+V T+L IRS+ Sbjct: 240 TRVVATIPGSGRSEIGKVAMVENTVDAATGMVTVRGIMDNASETLWPGTLVNTQLTIRSQ 299 Query: 301 DAVVVPTVAVQRSQNGNFVFVVKDGVAKVQPVKVDRTFQGSSVISDGLAGDESVVVDGQL 360 AVVVPTVAVQRSQ GNFVFV+KDGVA VQP+KV+RT+QG SV+S+GL+G E V DGQL Sbjct: 300 TAVVVPTVAVQRSQTGNFVFVIKDGVAHVQPIKVERTYQGLSVVSEGLSGGEEAVTDGQL 359 Query: 361 LLSEGSRVELRARKAGA 377 LLSEGS+VE+R RKAGA Sbjct: 360 LLSEGSKVEIRNRKAGA 376 >ref|YP_532367.1| secretion protein HlyD [Rhodopseudomonas palustris BisB18] gb|ABD88048.1| secretion protein HlyD [Rhodopseudomonas palustris BisB18] Length = 376 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 282/377 (74%), Positives = 325/377 (86%), Gaps = 1/377 (0%) Query: 1 MKKRNLVLTVAVLGIAAGAAYMTRTSWMGGGAATAQGTARPRVVSVDLAKAERKSVPVDV 60 M KRN ++ A+LGI +Y+TR+SW+ + AQ R RVV+V+LA+AER+ VP+DV Sbjct: 1 MNKRNRIVVAALLGIVVVGSYLTRSSWLAA-SVNAQAPQRARVVAVELARAERRQVPIDV 59 Query: 61 NAIGQVTPISSVALKSRLETTIVSVHFEDGARVNEGDLLFTLDARQIDAQIEQAEGVLAR 120 +AIG VTPISSVALKSRLETTIV+VHF+DGARV EG LLFTLD+RQ+DAQIEQAEG LAR Sbjct: 60 DAIGMVTPISSVALKSRLETTIVAVHFQDGARVEEGQLLFTLDSRQLDAQIEQAEGNLAR 119 Query: 121 DQAQLEGAQRDLRRYTELVGKGATTQVNLDNAKTQSDVLIGTIKADRFALENLRVQKSYT 180 D+AQL GA RDL+RY EL+GKGATTQVNLDNAKTQSD+L GTI+AD+ AL+NL+VQKS+T Sbjct: 120 DRAQLAGADRDLKRYGELIGKGATTQVNLDNAKTQSDILKGTIQADQSALDNLQVQKSFT 179 Query: 181 VIRAPFAGRISAANVKVGNFVRPADTQPLAVINQMAPVYVTFAIPQRALVDLRDAMGKGD 240 IRAPFAGRISAANVK+GNFVRPADT PLA INQMAPVYV+FA+PQR L DLRDA+ Sbjct: 180 TIRAPFAGRISAANVKIGNFVRPADTVPLATINQMAPVYVSFAVPQRVLADLRDAIAADT 239 Query: 241 SKVIATIPGHQRSERGKVAMVENAVDATTGMVTVRGIMNNESETLWPGTIVQTKLIIRSE 300 +K+IATIPG RSE GKVAMVENAVD+TTGMVTVRGIM+N +ETLWPGT+V TKLI+RSE Sbjct: 240 TKLIATIPGSGRSETGKVAMVENAVDSTTGMVTVRGIMDNGNETLWPGTLVTTKLIVRSE 299 Query: 301 DAVVVPTVAVQRSQNGNFVFVVKDGVAKVQPVKVDRTFQGSSVISDGLAGDESVVVDGQL 360 AVVVPTVAVQRSQ GNFVFVVKDG A VQPVKVDRT QG SVI++GL G E VV DGQL Sbjct: 300 TAVVVPTVAVQRSQTGNFVFVVKDGTAHVQPVKVDRTSQGLSVIAEGLRGGEEVVTDGQL 359 Query: 361 LLSEGSRVELRARKAGA 377 LLS+G++VE RARKAGA Sbjct: 360 LLSDGTKVEARARKAGA 376 >ref|YP_569932.1| secretion protein HlyD [Rhodopseudomonas palustris BisB5] gb|ABE40031.1| secretion protein HlyD [Rhodopseudomonas palustris BisB5] Length = 376 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 273/366 (74%), Positives = 309/366 (84%), Gaps = 1/366 (0%) Query: 12 VLGIAAGAAYMTRTSWMGGGAATAQGTARPRVVSVDLAKAERKSVPVDVNAIGQVTPISS 71 VLG AA A++ + +G RPRVV+VD+ KA RK VPVDV+AIG VTPISS Sbjct: 12 VLG-AAAVAFVALRPYFSEKQIATKGAQRPRVVAVDMVKAVRKPVPVDVDAIGTVTPISS 70 Query: 72 VALKSRLETTIVSVHFEDGARVNEGDLLFTLDARQIDAQIEQAEGVLARDQAQLEGAQRD 131 VALKSRLETTI++VHFEDGARV EGDLLFTLDARQIDAQIEQAEG LARD+AQL GA+RD Sbjct: 71 VALKSRLETTILAVHFEDGARVKEGDLLFTLDARQIDAQIEQAEGNLARDRAQLAGAERD 130 Query: 132 LRRYTELVGKGATTQVNLDNAKTQSDVLIGTIKADRFALENLRVQKSYTVIRAPFAGRIS 191 LRRY EL+ KGATTQVNLDNAKTQ+D+L GTIK + AL+NL+VQKS+T+IRAPF+GRIS Sbjct: 131 LRRYGELIAKGATTQVNLDNAKTQADILAGTIKGAQSALDNLKVQKSFTMIRAPFSGRIS 190 Query: 192 AANVKVGNFVRPADTQPLAVINQMAPVYVTFAIPQRALVDLRDAMGKGDSKVIATIPGHQ 251 AANVK+GNFVRPADT LA INQMAPVYVTFA+PQR LVDLRDAM +KV+ATIPG Sbjct: 191 AANVKIGNFVRPADTASLATINQMAPVYVTFAVPQRVLVDLRDAMKAESTKVVATIPGSG 250 Query: 252 RSERGKVAMVENAVDATTGMVTVRGIMNNESETLWPGTIVQTKLIIRSEDAVVVPTVAVQ 311 RSE GK+AMVEN VDATTGMVTVRGIM+N +ETLWPGT+V TKL IR+EDAV VPTVAVQ Sbjct: 251 RSEVGKMAMVENTVDATTGMVTVRGIMDNGNETLWPGTLVNTKLTIRTEDAVAVPTVAVQ 310 Query: 312 RSQNGNFVFVVKDGVAKVQPVKVDRTFQGSSVISDGLAGDESVVVDGQLLLSEGSRVELR 371 RSQ GNFVFVVKDG A VQPV V RTF+G +VI+ GLAG E +V DGQLLLSEG++VE R Sbjct: 311 RSQTGNFVFVVKDGAAHVQPVTVSRTFEGETVIAQGLAGGEDIVTDGQLLLSEGTKVESR 370 Query: 372 ARKAGA 377 +RKAGA Sbjct: 371 SRKAGA 376 >ref|ZP_08629729.1| putative RND efflux membrane fusion protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07584.1| putative RND efflux membrane fusion protein [Bradyrhizobiaceae bacterium SG-6C] Length = 380 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 263/377 (69%), Positives = 304/377 (80%), Gaps = 3/377 (0%) Query: 1 MKKRNLVLTVAVLGIAAGAAYMTRTSWMGGGAATAQGTARPRVVSVDLAKAERKSVPVDV 60 KKR L+ +A L + A A Y TR W GG A A+ RPR VSV++AKAE+K VPVDV Sbjct: 7 FKKRGLL--IAGLCVVAVAVYATRDMWTGG-TAPARQAPRPRAVSVEIAKAEKKQVPVDV 63 Query: 61 NAIGQVTPISSVALKSRLETTIVSVHFEDGARVNEGDLLFTLDARQIDAQIEQAEGVLAR 120 ++IG V PISSVALKSRLETTI++VHFEDGARV +GDLLFTLD+RQIDAQI QAEG LAR Sbjct: 64 DSIGTVVPISSVALKSRLETTIIAVHFEDGARVKQGDLLFTLDSRQIDAQIAQAEGNLAR 123 Query: 121 DQAQLEGAQRDLRRYTELVGKGATTQVNLDNAKTQSDVLIGTIKADRFALENLRVQKSYT 180 D++QL A RD++R+ EL+GKGATTQVN+DNAKT D TI+AD L+NL+VQKS+T Sbjct: 124 DRSQLAAADRDMKRFNELIGKGATTQVNVDNAKTAFDNATATIQADEAILDNLKVQKSFT 183 Query: 181 VIRAPFAGRISAANVKVGNFVRPADTQPLAVINQMAPVYVTFAIPQRALVDLRDAMGKGD 240 +I+AP +GRISAA+VKVGNFVRPADT PLA INQMAPVYV FAIPQR L DLRDAM G Sbjct: 184 LIKAPISGRISAASVKVGNFVRPADTSPLATINQMAPVYVAFAIPQRVLSDLRDAMKDGK 243 Query: 241 SKVIATIPGHQRSERGKVAMVENAVDATTGMVTVRGIMNNESETLWPGTIVQTKLIIRSE 300 S V ATIPG+ +SE G VAMVENAVDATTGMVTVRG+M NESE LWPG +V L IR+E Sbjct: 244 SSVTATIPGNDKSETGTVAMVENAVDATTGMVTVRGMMGNESEVLWPGVLVNATLTIRTE 303 Query: 301 DAVVVPTVAVQRSQNGNFVFVVKDGVAKVQPVKVDRTFQGSSVISDGLAGDESVVVDGQL 360 AVVVP+VAVQRSQ GNFVF+VKDG A++QPV V+RTF+G SVI GL G E VV+DGQL Sbjct: 304 SAVVVPSVAVQRSQTGNFVFMVKDGKAQMQPVTVNRTFRGHSVIESGLQGGEDVVIDGQL 363 Query: 361 LLSEGSRVELRARKAGA 377 LLS GS VE R+RKAGA Sbjct: 364 LLSNGSPVEPRSRKAGA 380