BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0016.p (263 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001206039.1| exodeoxyribonuclease III [Bradyrhizobium sp.... 487 e-136 ref|NP_771401.1| exonuclease III [Bradyrhizobium japonicum USDA ... 484 e-135 ref|YP_001240380.1| exodeoxyribonuclease III [Bradyrhizobium sp.... 481 e-134 ref|YP_569933.1| exodeoxyribonuclease III [Rhodopseudomonas palu... 463 e-128 ref|NP_948202.1| exodeoxyribonuclease III [Rhodopseudomonas palu... 452 e-125 >ref|YP_001206039.1| exodeoxyribonuclease III [Bradyrhizobium sp. ORS 278] emb|CAL77814.1| exodeoxyribonuclease III [Bradyrhizobium sp. ORS 278] Length = 263 Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust. Identities = 230/263 (87%), Positives = 244/263 (92%) Query: 1 MRIATWNVNSVRQRIELLVSWLKECSPDIVCLQEIKCVDDAFPRLEVEALGYNVVTHGQK 60 MRIATWNVNS+RQRIE LV+WLKECSPDIVCLQEIKC DDAFPRLE+EALGYNVVTHGQK Sbjct: 1 MRIATWNVNSIRQRIEHLVTWLKECSPDIVCLQEIKCTDDAFPRLEIEALGYNVVTHGQK 60 Query: 61 TFNGVALLSKLPFDETKSGLAGDDEDAHARFLEGVVTLKQGVIRVACLYLPNGNPANTDK 120 TFNGVALLSKLPFDETKSGL GD ED HARFLEGVV+LK GV+R+ACLYLPNGNP NT+K Sbjct: 61 TFNGVALLSKLPFDETKSGLDGDAEDVHARFLEGVVSLKSGVVRIACLYLPNGNPPNTEK 120 Query: 121 YPYKLKWMSRLLGYAKERLKAEEPLILAGDFNVIPAARDVYNPAAWADDALFRPATREAF 180 YPYKLKWMSRL YA+ERLK EEPLILAGDFNVIPAA DV NP AW +DALFRP TRE+F Sbjct: 121 YPYKLKWMSRLRDYARERLKTEEPLILAGDFNVIPAAADVSNPEAWVEDALFRPETRESF 180 Query: 181 QSLLGLGLTDALRAVNDEPGQYTFWDYQAGAWQKNWGLRIDHLLMSPQASDRLIDVGIDS 240 QSLLGLGLTDALRAVND PGQYTFWDYQAGAWQKN G+RIDHLL+SPQASDRL++VGIDS Sbjct: 181 QSLLGLGLTDALRAVNDAPGQYTFWDYQAGAWQKNAGIRIDHLLLSPQASDRLVEVGIDS 240 Query: 241 YVRAWEKPSDHVPVWADLDFETA 263 YVRAWEKPSDHVPVWAD D ETA Sbjct: 241 YVRAWEKPSDHVPVWADFDLETA 263 >ref|NP_771401.1| exonuclease III [Bradyrhizobium japonicum USDA 110] dbj|BAC50026.1| exonuclease III [Bradyrhizobium japonicum USDA 110] Length = 273 Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust. Identities = 229/263 (87%), Positives = 246/263 (93%) Query: 1 MRIATWNVNSVRQRIELLVSWLKECSPDIVCLQEIKCVDDAFPRLEVEALGYNVVTHGQK 60 +R+ATWNVNSVRQRI+LL++WLKEC PDIVCLQEIKCVD+AFPRLE+EALGYNVVTHGQK Sbjct: 11 IRVATWNVNSVRQRIDLLLTWLKECQPDIVCLQEIKCVDEAFPRLEIEALGYNVVTHGQK 70 Query: 61 TFNGVALLSKLPFDETKSGLAGDDEDAHARFLEGVVTLKQGVIRVACLYLPNGNPANTDK 120 TFNGVALLSKL FDETKSGLAGDDEDAHARFLEGVVTLK GV+R+ACLYLPNGNP T+K Sbjct: 71 TFNGVALLSKLRFDETKSGLAGDDEDAHARFLEGVVTLKHGVLRIACLYLPNGNPVGTEK 130 Query: 121 YPYKLKWMSRLLGYAKERLKAEEPLILAGDFNVIPAARDVYNPAAWADDALFRPATREAF 180 YPYKLKWMSRLL Y+KERLK EEPLILAGDFNVIP ARDV+NPAAW +DALF+ TRE+F Sbjct: 131 YPYKLKWMSRLLEYSKERLKTEEPLILAGDFNVIPHARDVHNPAAWTEDALFKTETRESF 190 Query: 181 QSLLGLGLTDALRAVNDEPGQYTFWDYQAGAWQKNWGLRIDHLLMSPQASDRLIDVGIDS 240 QSLLGLGLTDALRAV DEPG YTFWDYQAGAWQKN GLRIDHLL+SPQASDRL +VGIDS Sbjct: 191 QSLLGLGLTDALRAVTDEPGLYTFWDYQAGAWQKNHGLRIDHLLLSPQASDRLANVGIDS 250 Query: 241 YVRAWEKPSDHVPVWADLDFETA 263 YVRAWEKPSDHVPVWADLD E A Sbjct: 251 YVRAWEKPSDHVPVWADLDLEAA 273 >ref|YP_001240380.1| exodeoxyribonuclease III [Bradyrhizobium sp. BTAi1] gb|ABQ36474.1| Exodeoxyribonuclease III [Bradyrhizobium sp. BTAi1] Length = 263 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 227/263 (86%), Positives = 242/263 (92%) Query: 1 MRIATWNVNSVRQRIELLVSWLKECSPDIVCLQEIKCVDDAFPRLEVEALGYNVVTHGQK 60 MRIATWNVNSVRQRIE LV+WLKECSPDIVCLQEIKC DDAFPRLE+EALGYNVVTHGQK Sbjct: 1 MRIATWNVNSVRQRIEHLVTWLKECSPDIVCLQEIKCTDDAFPRLEIEALGYNVVTHGQK 60 Query: 61 TFNGVALLSKLPFDETKSGLAGDDEDAHARFLEGVVTLKQGVIRVACLYLPNGNPANTDK 120 TFNGVALLSKLPFDET+SGL GD ED HARFLEGVV+LK GV+R+ACLYLPNGNP NT+K Sbjct: 61 TFNGVALLSKLPFDETRSGLDGDVEDVHARFLEGVVSLKHGVVRIACLYLPNGNPPNTEK 120 Query: 121 YPYKLKWMSRLLGYAKERLKAEEPLILAGDFNVIPAARDVYNPAAWADDALFRPATREAF 180 YPYKLKWMSRL Y +ERLK EEPLILAGDFNVIPAA DV NP AW +DALFRP TRE+F Sbjct: 121 YPYKLKWMSRLRDYTRERLKTEEPLILAGDFNVIPAAADVSNPEAWVEDALFRPETRESF 180 Query: 181 QSLLGLGLTDALRAVNDEPGQYTFWDYQAGAWQKNWGLRIDHLLMSPQASDRLIDVGIDS 240 Q+LLGLGLTDALRAV D PGQYTFWDYQAGAWQKN G+RIDHLL+SPQASDRL++VGIDS Sbjct: 181 QALLGLGLTDALRAVTDAPGQYTFWDYQAGAWQKNAGIRIDHLLLSPQASDRLVEVGIDS 240 Query: 241 YVRAWEKPSDHVPVWADLDFETA 263 YVRAWEKPSDHVPVWAD D ETA Sbjct: 241 YVRAWEKPSDHVPVWADFDLETA 263 >ref|YP_569933.1| exodeoxyribonuclease III [Rhodopseudomonas palustris BisB5] gb|ABE40032.1| Exodeoxyribonuclease III [Rhodopseudomonas palustris BisB5] Length = 263 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 215/263 (81%), Positives = 235/263 (89%) Query: 1 MRIATWNVNSVRQRIELLVSWLKECSPDIVCLQEIKCVDDAFPRLEVEALGYNVVTHGQK 60 MRIATWNVNSVRQRI+ LVSWLK C PD+VCLQEIKCVD+AFPR +EALGYN+VTHGQK Sbjct: 1 MRIATWNVNSVRQRIDHLVSWLKACEPDVVCLQEIKCVDEAFPREPIEALGYNIVTHGQK 60 Query: 61 TFNGVALLSKLPFDETKSGLAGDDEDAHARFLEGVVTLKQGVIRVACLYLPNGNPANTDK 120 TFNGVALLSK P +E LAGD+ D HARFLEGVV+LK+GV+RVACLYLPNGNP T+K Sbjct: 61 TFNGVALLSKYPLEEATPRLAGDETDVHARFLEGVVSLKRGVVRVACLYLPNGNPVETEK 120 Query: 121 YPYKLKWMSRLLGYAKERLKAEEPLILAGDFNVIPAARDVYNPAAWADDALFRPATREAF 180 YPYKL WMSRLL Y+KERLK EEPLILAGDFNVIP A DVYNPA W DDALFRP TRE+F Sbjct: 121 YPYKLSWMSRLLQYSKERLKTEEPLILAGDFNVIPQASDVYNPAGWVDDALFRPQTRESF 180 Query: 181 QSLLGLGLTDALRAVNDEPGQYTFWDYQAGAWQKNWGLRIDHLLMSPQASDRLIDVGIDS 240 Q+LLGLGLTDALRA D PGQYTFWDYQAGAWQKNWG+RIDHLL+SPQA+DRL+ VGIDS Sbjct: 181 QALLGLGLTDALRATTDAPGQYTFWDYQAGAWQKNWGIRIDHLLLSPQATDRLVGVGIDS 240 Query: 241 YVRAWEKPSDHVPVWADLDFETA 263 +VR+WEKPSDHVPVWAD DFETA Sbjct: 241 HVRSWEKPSDHVPVWADFDFETA 263 >ref|NP_948202.1| exodeoxyribonuclease III [Rhodopseudomonas palustris CGA009] emb|CAE28302.1| exodeoxyribonuclease III [Rhodopseudomonas palustris CGA009] Length = 303 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 209/263 (79%), Positives = 232/263 (88%) Query: 1 MRIATWNVNSVRQRIELLVSWLKECSPDIVCLQEIKCVDDAFPRLEVEALGYNVVTHGQK 60 MRIATWNVNSVRQR++ LVSWL++C PD+VCLQEIKCVD+AFPR +EALGYNVVTHGQK Sbjct: 41 MRIATWNVNSVRQRLDHLVSWLQDCQPDVVCLQEIKCVDEAFPREPIEALGYNVVTHGQK 100 Query: 61 TFNGVALLSKLPFDETKSGLAGDDEDAHARFLEGVVTLKQGVIRVACLYLPNGNPANTDK 120 TFNGVALLSK P +E GLAGD+ D HARFLEGVV+LK GV+RVACLYLPNGNP ++K Sbjct: 101 TFNGVALLSKYPLEEANPGLAGDESDVHARFLEGVVSLKHGVVRVACLYLPNGNPVGSEK 160 Query: 121 YPYKLKWMSRLLGYAKERLKAEEPLILAGDFNVIPAARDVYNPAAWADDALFRPATREAF 180 YPYKL WM+RL YA++RLK EEPLILAGDFNVIP A DV+NPAAW +DALFRP TRE+F Sbjct: 161 YPYKLSWMARLRDYAQQRLKTEEPLILAGDFNVIPQAEDVHNPAAWTEDALFRPETRESF 220 Query: 181 QSLLGLGLTDALRAVNDEPGQYTFWDYQAGAWQKNWGLRIDHLLMSPQASDRLIDVGIDS 240 Q+LLGLGLTDALRA D PGQYTFWDYQAGAWQKNWG+RIDHLL+SPQA+DRL VGIDS Sbjct: 221 QTLLGLGLTDALRATTDAPGQYTFWDYQAGAWQKNWGIRIDHLLLSPQAADRLRHVGIDS 280 Query: 241 YVRAWEKPSDHVPVWADLDFETA 263 YVR WEKPSDHVPVWAD D E A Sbjct: 281 YVRNWEKPSDHVPVWADFDLEAA 303