BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0001.p (256 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_781961.1| hypothetical protein RPE_3044 [Rhodopseudomonas... 330 1e-88 ref|NP_767945.1| hypothetical protein bll1305 [Bradyrhizobium ja... 323 1e-86 ref|YP_001237103.1| hypothetical protein BBta_0941 [Bradyrhizobi... 319 2e-85 ref|YP_001681985.1| hypothetical protein Caul_0350 [Caulobacter ... 191 7e-47 ref|YP_003593399.1| hypothetical protein Cseg_2321 [Caulobacter ... 178 7e-43 >ref|YP_781961.1| hypothetical protein RPE_3044 [Rhodopseudomonas palustris BisA53] gb|ABJ06981.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 255 Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 161/253 (63%), Positives = 199/253 (78%) Query: 4 LIDRNSPRASAKVEAKFFYFYMALSCMAVAFLGFAPTYWMPMARGSLSSPPVVHLHGLLF 63 LI PR + + ++ FY MAL+C A AF+GFAPTYWMP+A +L + P+VHLHG +F Sbjct: 3 LITAAPPRRALRADSSKFYVAMALTCAATAFVGFAPTYWMPLASRTLQASPIVHLHGAVF 62 Query: 64 FAWTLYFVFQSWLAASGRIARHRSVGLIGISLATAMTMMGIVASISVMKRSAAIGQANEG 123 FAW+L+FV+QSWLA+SGR+ +HR +G+IG+S ATAMT+ G + +I M+RSAAIG EG Sbjct: 63 FAWSLFFVYQSWLASSGRVMKHREIGMIGVSFATAMTIFGTMVAIHAMQRSAAIGMREEG 122 Query: 124 LAFAIVPLSGILFFAVVFALAIICLRDRETHKRLMLLASISILDAAVARWFLTFLAPPGP 183 +AFAIVPLSGI FFA+ F LA+ +R + HKRLMLLA+IS+LDAAVARWFLTFLAP G Sbjct: 123 IAFAIVPLSGIAFFAITFTLAVAMVRRPDVHKRLMLLAAISLLDAAVARWFLTFLAPAGA 182 Query: 184 PGPPPVPVTIAPALVAYLLLVVAIVFDWRTRGRPHPVYVYGGLALVAVKLLNWPISTSAA 243 GPPPV VTI PALVA LLLV A+V+DW+ RGRPH VYV GG AL+A KLLNWP+S + A Sbjct: 183 IGPPPVEVTIPPALVASLLLVPAMVYDWKRRGRPHLVYVVGGTALIATKLLNWPLSITKA 242 Query: 244 WHSVAGGILALAQ 256 WH AGG+LALA Sbjct: 243 WHQFAGGLLALAS 255 >ref|NP_767945.1| hypothetical protein bll1305 [Bradyrhizobium japonicum USDA 110] dbj|BAC46570.1| bll1305 [Bradyrhizobium japonicum USDA 110] Length = 256 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 174/256 (67%), Positives = 209/256 (81%) Query: 1 MTILIDRNSPRASAKVEAKFFYFYMALSCMAVAFLGFAPTYWMPMARGSLSSPPVVHLHG 60 MTILID RA A++FY +MAL+C A AFLGFAPTYW+P+A + S+ PV+H HG Sbjct: 1 MTILIDDRRVRARDASPARYFYLHMALACAATAFLGFAPTYWVPLAHRTFSASPVIHFHG 60 Query: 61 LLFFAWTLYFVFQSWLAASGRIARHRSVGLIGISLATAMTMMGIVASISVMKRSAAIGQA 120 LLFF W+LYFV Q+WLAASGR+ HR++G++G+SLATAMT+ G +AS+ VM+ SAA+GQ Sbjct: 61 LLFFTWSLYFVIQTWLAASGRVVNHRAIGIVGVSLATAMTIFGFLASVHVMQHSAALGQK 120 Query: 121 NEGLAFAIVPLSGILFFAVVFALAIICLRDRETHKRLMLLASISILDAAVARWFLTFLAP 180 G+AF+IVP+SGI FFAVVF L I R E HKRLMLLA++SILDAA+ARWFLTFLAP Sbjct: 121 EAGIAFSIVPMSGIAFFAVVFVLGIANTRRPEIHKRLMLLAAVSILDAAIARWFLTFLAP 180 Query: 181 PGPPGPPPVPVTIAPALVAYLLLVVAIVFDWRTRGRPHPVYVYGGLALVAVKLLNWPIST 240 PGPPGPPPVPVTIAPA+VA LLLVVA+V DWRT R H VY+ G LA++AVK+LNWPIS Sbjct: 181 PGPPGPPPVPVTIAPAVVASLLLVVAMVRDWRTERRVHLVYITGTLAMLAVKVLNWPISE 240 Query: 241 SAAWHSVAGGILALAQ 256 SAAWH+ AGGILALAQ Sbjct: 241 SAAWHAFAGGILALAQ 256 >ref|YP_001237103.1| hypothetical protein BBta_0941 [Bradyrhizobium sp. BTAi1] gb|ABQ33197.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 227 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 172/227 (75%), Positives = 193/227 (85%) Query: 30 MAVAFLGFAPTYWMPMARGSLSSPPVVHLHGLLFFAWTLYFVFQSWLAASGRIARHRSVG 89 MA AFLGFAPTYW+P+ARGS S PVVH HG LFF WTLYF FQS LAASGR A HRS+G Sbjct: 1 MATAFLGFAPTYWLPLARGSFSGAPVVHFHGFLFFTWTLYFTFQSGLAASGRKAWHRSLG 60 Query: 90 LIGISLATAMTMMGIVASISVMKRSAAIGQANEGLAFAIVPLSGILFFAVVFALAIICLR 149 + G+SLATAMT+ G + ++ MKRSAAIGQANEG+AFAIVPLSGI FFAVVFALA++ R Sbjct: 61 IFGVSLATAMTIFGFLVAVEAMKRSAAIGQANEGIAFAIVPLSGIAFFAVVFALAVMQAR 120 Query: 150 DRETHKRLMLLASISILDAAVARWFLTFLAPPGPPGPPPVPVTIAPALVAYLLLVVAIVF 209 ETHKRLMLLA IS+LDAAVARWFLTFLAPPGP GPPPV VTI PA VAYLLLVVAI++ Sbjct: 121 RPETHKRLMLLAGISLLDAAVARWFLTFLAPPGPLGPPPVFVTIPPAFVAYLLLVVAIIY 180 Query: 210 DWRTRGRPHPVYVYGGLALVAVKLLNWPISTSAAWHSVAGGILALAQ 256 D RT GR HPVYVYGGLAL+AVKLLNWPIS ++ WH++ G ILA+AQ Sbjct: 181 DRRTFGRVHPVYVYGGLALIAVKLLNWPISMTSTWHAIGGSILAMAQ 227 >ref|YP_001681985.1| hypothetical protein Caul_0350 [Caulobacter sp. K31] gb|ABZ69487.1| conserved hypothetical protein [Caulobacter sp. K31] Length = 268 Score = 191 bits (486), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 122/254 (48%), Positives = 170/254 (66%), Gaps = 17/254 (6%) Query: 18 AKFFYFYMALSCMAVAFLGFAPTYWMPMARGSLSSPPVVHLHGLLFFAWTLYFVFQSWLA 77 ++ FYF MAL+C+A+A LGF PTY++PMA+G + P+VH+HGL+ F+W F Q+WL Sbjct: 15 SRQFYFTMALTCLAIAVLGFVPTYFLPMAQGRFRAEPLVHIHGLVLFSWMTLFCAQTWLV 74 Query: 78 ASGRIARHRSVGLIGISLATAMTMMGIVASISVMKRSAAI-----GQANEGLAFAIVPLS 132 A G+ HR+ G++G+S+ATAM ++ + A +S+ A++ G A+ AFA V + Sbjct: 75 AQGKTLAHRAWGVLGVSIATAMLLL-VTAVVSMRIAQASLPGQPAGLAHHVRAFAWVSIG 133 Query: 133 GILFFAVVFALAIICLRDRETHKRLMLLASISILDAAVARWFLTFLAPPGPP-------- 184 GI FF F LAI+ ++ ETHKRL+LLA+IS+L A +ARWF+TFLAPP P Sbjct: 134 GISFFTGAFVLAIVKVKQPETHKRLLLLATISLLGAPIARWFMTFLAPPAGPPPALPPGL 193 Query: 185 ---GPPPVPVTIAPALVAYLLLVVAIVFDWRTRGRPHPVYVYGGLALVAVKLLNWPISTS 241 G PPV V I P+LV +LL++AI DWRTRGRPHPVY+ GG L+ ++L P+S S Sbjct: 194 PVVGAPPVFVAIPPSLVGDILLLIAIWVDWRTRGRPHPVYLIGGALLLLLQLTEVPVSDS 253 Query: 242 AAWHSVAGGILALA 255 AAW ++A I LA Sbjct: 254 AAWQAIATAIGHLA 267 >ref|YP_003593399.1| hypothetical protein Cseg_2321 [Caulobacter segnis ATCC 21756] gb|ADG10781.1| conserved hypothetical protein [Caulobacter segnis ATCC 21756] Length = 251 Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 123/248 (49%), Positives = 162/248 (65%), Gaps = 1/248 (0%) Query: 9 SPRASAKVEAKFFYFYMALSCMAVAFLGFAPTYWMPMARGSLSSPPVVHLHGLLFFAWTL 68 S RA+ V +F Y MA +AF GF PTYW +A G+ P++HLHGL+FF+WTL Sbjct: 5 SERAAWPVGRRF-YVAMAAIFTLIAFGGFVPTYWAKLASGTFGGAPILHLHGLIFFSWTL 63 Query: 69 YFVFQSWLAASGRIARHRSVGLIGISLATAMTMMGIVASISVMKRSAAIGQANEGLAFAI 128 F+ Q+WL ASGR HRS G+ G+SLATAM ++A+I+ MK + A G + F++ Sbjct: 64 LFLAQTWLVASGRTIDHRSWGVAGVSLATAMAFTVVLAAINSMKVADAAGFGDAARRFSV 123 Query: 129 VPLSGILFFAVVFALAIICLRDRETHKRLMLLASISILDAAVARWFLTFLAPPGPPGPPP 188 V L+ ++ FA F A++ +R E HKRLMLLA I + AA AR F+ APPG GPPP Sbjct: 124 VSLTSLVMFAGFFVAALLNVRKPEVHKRLMLLAMIPPMQAATARVFMVLFAPPGMVGPPP 183 Query: 189 VPVTIAPALVAYLLLVVAIVFDWRTRGRPHPVYVYGGLALVAVKLLNWPISTSAAWHSVA 248 V V+I P L LL+V A++FDWRTRGRPHPVY GG L+A +LL P+S SAAW + A Sbjct: 184 VFVSIPPGLAVDLLIVAAMIFDWRTRGRPHPVYWIGGGLLLAQQLLVIPLSQSAAWMAFA 243 Query: 249 GGILALAQ 256 G + LA+ Sbjct: 244 GWVDHLAR 251