BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0028.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001888464.1| AraC family transcriptional regulator [Burkh... 463 e-128 ref|YP_001862267.1| AraC family transcriptional regulator [Burkh... 452 e-125 ref|ZP_07028469.1| transcriptional regulator, AraC family [Afipi... 371 e-100 ref|YP_002496345.1| AraC family transcriptional regulator [Methy... 363 2e-98 ref|ZP_06840440.1| transcriptional regulator, AraC family [Burkh... 362 7e-98 >ref|YP_001888464.1| AraC family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD19094.1| transcriptional regulator, AraC family [Burkholderia phytofirmans PsJN] Length = 318 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 232/320 (72%), Positives = 272/320 (85%), Gaps = 5/320 (1%) Query: 1 MHRVGLIVPHDFQLLSLAPMTAFEMTGFGLAKPPPTDSHYDLHLLSEHGGPVRSSCGLTV 60 MHR+G IVP FQL+SLA +T FE +A PPT YD+HLLSEHGGPV SS G+T+ Sbjct: 1 MHRIGFIVPPRFQLMSLAALTVFE-----IANMPPTGRCYDVHLLSEHGGPVESSGGMTL 55 Query: 61 DTEAFGDPAFDTIIVGAVTAFEMAPSSANLIAFVQEAAKVSRRTASFCNGAFVLAEAGLL 120 TEAFG+P FDT+IVG++T +M S A +IAFV+EAA+VSRR S C+GAFVLAEAGLL Sbjct: 56 QTEAFGNPGFDTLIVGSITEMKMPSSGATMIAFVKEAARVSRRITSICSGAFVLAEAGLL 115 Query: 121 DGRRATTHWIQATSFRARFPDVRMEEDRIYINDGPIWTSAGMTAGIDLVLAMIDRDLGSE 180 DGRRAT HW A FRARFP+V EEDRI++NDGPIWTSAGMTAGIDL LA++D DLG + Sbjct: 116 DGRRATMHWAHAAEFRARFPNVVTEEDRIFVNDGPIWTSAGMTAGIDLALALLDNDLGPD 175 Query: 181 VAKVAAKLMVINQRRMGGQTQHSALLDMTPKSDRIQLVVAYIRQNLRNPLTIENLAAVAN 240 AK+ A+L+V+NQRR+GGQ QHSALLDMTPKSDRI+ V+A+IR+NLRNPLT+E LA VAN Sbjct: 176 TAKMVARLLVMNQRRLGGQKQHSALLDMTPKSDRIEAVLAHIRRNLRNPLTVEELADVAN 235 Query: 241 LSPRQFSRAFLAETGQSPAKAVERLRLETARFMMEEGRHTVNVVAEEVGFADRERMRRAF 300 LSPRQFSRAF+AETGQSPAKAVE+LRLE ARFM+E+GRHT+NVVA+E GFADRERMRRAF Sbjct: 236 LSPRQFSRAFVAETGQSPAKAVEQLRLEAARFMIEQGRHTINVVAQETGFADRERMRRAF 295 Query: 301 LRTFGVPPEVLRRNARREAV 320 LRTFGVP + LRR+ARREAV Sbjct: 296 LRTFGVPADFLRRSARREAV 315 >ref|YP_001862267.1| AraC family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC75221.1| transcriptional regulator, AraC family [Burkholderia phymatum STM815] Length = 318 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 224/321 (69%), Positives = 270/321 (84%), Gaps = 5/321 (1%) Query: 1 MHRVGLIVPHDFQLLSLAPMTAFEMTGFGLAKPPPTDSHYDLHLLSEHGGPVRSSCGLTV 60 MHR+G IVP FQ++SLA +T FE +A PP + Y++HLLSEHGGPV SS G+ + Sbjct: 1 MHRIGFIVPKRFQMMSLAALTVFE-----IANMPPRGACYEVHLLSEHGGPVVSSGGMRL 55 Query: 61 DTEAFGDPAFDTIIVGAVTAFEMAPSSANLIAFVQEAAKVSRRTASFCNGAFVLAEAGLL 120 +TE FGDPAFDT+IVG++T +M A ++AFV++AAK SRR S C+GAFVLAEAGLL Sbjct: 56 ETEVFGDPAFDTVIVGSITEMKMPAPDAAVVAFVKKAAKASRRITSICSGAFVLAEAGLL 115 Query: 121 DGRRATTHWIQATSFRARFPDVRMEEDRIYINDGPIWTSAGMTAGIDLVLAMIDRDLGSE 180 DGRRAT HW A+ FRARFP+VR EEDRI++NDGP WTSAGMTAGIDL LA++D DLG + Sbjct: 116 DGRRATMHWAHASEFRARFPNVRTEEDRIFVNDGPFWTSAGMTAGIDLALALLDNDLGPD 175 Query: 181 VAKVAAKLMVINQRRMGGQTQHSALLDMTPKSDRIQLVVAYIRQNLRNPLTIENLAAVAN 240 AK+ A+L+V+NQRR+GGQ QHSALLDMTPKSDRI+ VVA+IR+NLRNPLTIE LA VAN Sbjct: 176 AAKMVARLLVMNQRRLGGQMQHSALLDMTPKSDRIERVVAHIRRNLRNPLTIEELAEVAN 235 Query: 241 LSPRQFSRAFLAETGQSPAKAVERLRLETARFMMEEGRHTVNVVAEEVGFADRERMRRAF 300 LSPRQFSRAF+AETGQSPAKAVE+LRLE ARFM+E+GRHT+NVVA+E GFADRERMRRAF Sbjct: 236 LSPRQFSRAFVAETGQSPAKAVEQLRLEAARFMIEQGRHTINVVAQETGFADRERMRRAF 295 Query: 301 LRTFGVPPEVLRRNARREAVT 321 +RT+GVP ++LRR+AR E T Sbjct: 296 VRTYGVPADILRRSARAEPAT 316 >ref|ZP_07028469.1| transcriptional regulator, AraC family [Afipia sp. 1NLS2] gb|EFI50459.1| transcriptional regulator, AraC family [Afipia sp. 1NLS2] Length = 312 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 184/316 (58%), Positives = 230/316 (72%), Gaps = 7/316 (2%) Query: 1 MHRVGLIVPHDFQLLSLAPMTAFEMTGFGLAKPPPTDSHYDLHLLSEHGGPVRSSCGLTV 60 MH V L + FQ + A ++AFE+ L KP Y L LLSE+GGPVRSS G + Sbjct: 1 MHEVALAIFPGFQAMGFAVVSAFEVANMTLGKPA-----YRLTLLSENGGPVRSSAGFCI 55 Query: 61 DTEAFGDPAFDTIIVGAVTAFEMAPSSANLIAFVQEAAKVSRRTASFCNGAFVLAEAGLL 120 +TEAFGD FDT+++GA E P + + FV+ + +RR A+ C GAFVLAEAG+L Sbjct: 56 ETEAFGDETFDTVVIGAGAQIE--PVTPAMAEFVRRSMGTARRVAAPCIGAFVLAEAGVL 113 Query: 121 DGRRATTHWIQATSFRARFPDVRMEEDRIYINDGPIWTSAGMTAGIDLVLAMIDRDLGSE 180 DGRRATTHW A R R+P + +EEDRIYI DGP+WTSAGMTAGIDL LAMI++D G+E Sbjct: 114 DGRRATTHWAFAQELRQRYPAITVEEDRIYIVDGPVWTSAGMTAGIDLALAMIEKDHGAE 173 Query: 181 VAKVAAKLMVINQRRMGGQTQHSALLDMTPKSDRIQLVVAYIRQNLRNPLTIENLAAVAN 240 VA+ A+ +V+ RR GGQ+Q S LL++ PKSDRIQ + Y + +L N L++E LA A+ Sbjct: 174 VARSVARKLVVYHRRTGGQSQFSTLLELAPKSDRIQSALDYAKSHLGNVLSVEELAQAAH 233 Query: 241 LSPRQFSRAFLAETGQSPAKAVERLRLETARFMMEEGRHTVNVVAEEVGFADRERMRRAF 300 LSPRQFSRAF AETGQSPAKAVE LR+E AR MMEEGRH+++V+A E GFADRERMRRAF Sbjct: 234 LSPRQFSRAFRAETGQSPAKAVEHLRVEAARLMMEEGRHSMDVIANETGFADRERMRRAF 293 Query: 301 LRTFGVPPEVLRRNAR 316 LR G PP+ +RR+AR Sbjct: 294 LRVLGQPPQSIRRHAR 309 >ref|YP_002496345.1| AraC family transcriptional regulator [Methylobacterium nodulans ORS 2060] gb|ACL56042.1| transcriptional regulator, AraC family [Methylobacterium nodulans ORS 2060] Length = 316 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 184/323 (56%), Positives = 234/323 (72%), Gaps = 7/323 (2%) Query: 1 MHRVGLIVPHDFQLLSLAPMTAFEMTGFGLAKPPPTDSHYDLHLLSEHGGPVRSSCGLTV 60 M V ++ FQ++SLA +TAFE LA D+ Y ++ LSE GGPV SS G V Sbjct: 1 MRSVAFLLFPGFQMMSLAAVTAFE-----LANAASGDAAYTVNFLSETGGPVASSIGAAV 55 Query: 61 DTEAFGDPAFDTIIVGAVTAFEMAPSSANLIAFVQEAAKVSRRTASFCNGAFVLAEAGLL 120 +T+ FG+ DT++V + +AP A IA VQ A++ +RR A C GAF LA+AGLL Sbjct: 56 ETQPFGEAHHDTVVVVGELSAGLAP--AGFIAGVQAASRRTRRIAGICTGAFPLAQAGLL 113 Query: 121 DGRRATTHWIQATSFRARFPDVRMEEDRIYINDGPIWTSAGMTAGIDLVLAMIDRDLGSE 180 DGRRATTHW A + + +P V++EEDRI+I DGP+WTSAGMTA IDL LA+I+ DLG + Sbjct: 114 DGRRATTHWAYARALQRLYPAVKVEEDRIFIADGPVWTSAGMTAAIDLALALIEEDLGRD 173 Query: 181 VAKVAAKLMVINQRRMGGQTQHSALLDMTPKSDRIQLVVAYIRQNLRNPLTIENLAAVAN 240 +++ A+ +V+ RR GGQ+Q SALL++ PKSDRIQ + Y R+NLRNPL++E LA A+ Sbjct: 174 MSRALARKLVVYHRRSGGQSQFSALLELEPKSDRIQSALTYARRNLRNPLSVEELAEAAH 233 Query: 241 LSPRQFSRAFLAETGQSPAKAVERLRLETARFMMEEGRHTVNVVAEEVGFADRERMRRAF 300 LSPRQFSR F AETGQSPAKAVE LRLE AR MME+GRH ++VVA E GFADRERMRRAF Sbjct: 234 LSPRQFSRVFRAETGQSPAKAVENLRLEAARAMMEDGRHAIDVVARETGFADRERMRRAF 293 Query: 301 LRTFGVPPEVLRRNARREAVTTA 323 LR FG PP+V+RR+AR E + A Sbjct: 294 LRAFGQPPQVIRRSARAEEIRAA 316 >ref|ZP_06840440.1| transcriptional regulator, AraC family [Burkholderia sp. Ch1-1] gb|EFG72160.1| transcriptional regulator, AraC family [Burkholderia sp. Ch1-1] Length = 311 Score = 362 bits (928), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 176/316 (55%), Positives = 229/316 (72%), Gaps = 7/316 (2%) Query: 1 MHRVGLIVPHDFQLLSLAPMTAFEMTGFGLAKPPPTDSHYDLHLLSEHGGPVRSSCGLTV 60 M VG++V FQ+L + ++ FE+ +P Y + ++SEHGG VRSS G+ + Sbjct: 1 MRHVGVVVFPGFQILDMVAISVFELANLEAGQP-----EYQVEVISEHGGMVRSSAGVEI 55 Query: 61 DTEAFGDPAFDTIIVGAVTAFEMAPSSANLIAFVQEAAKVSRRTASFCNGAFVLAEAGLL 120 T F DPA+DT++V A ++APSS+ L+AF+ +A SRRTAS C GAFVLAEAG+L Sbjct: 56 ATRRFSDPAYDTVVVTG--AMQIAPSSSGLLAFLNDALAASRRTASICTGAFVLAEAGIL 113 Query: 121 DGRRATTHWIQATSFRARFPDVRMEEDRIYINDGPIWTSAGMTAGIDLVLAMIDRDLGSE 180 DGR ATTHWI A + RFP R++EDRI+I DG +WTSAGMTA IDL LA+++ DLG E Sbjct: 114 DGRHATTHWIHARDLQRRFPQARVDEDRIFIVDGSVWTSAGMTACIDLCLALVENDLGVE 173 Query: 181 VAKVAAKLMVINQRRMGGQTQHSALLDMTPKSDRIQLVVAYIRQNLRNPLTIENLAAVAN 240 V++ AK +V+ RR GGQ+Q SA+L++ PKSDRIQ ++Y + +LR PLT+E LA VA+ Sbjct: 174 VSRAIAKKLVVYHRRTGGQSQFSAMLELEPKSDRIQNALSYAKSHLREPLTVEQLADVAH 233 Query: 241 LSPRQFSRAFLAETGQSPAKAVERLRLETARFMMEEGRHTVNVVAEEVGFADRERMRRAF 300 LSPRQFSRAF ET QSPAKA+E LR+E AR M+E GRH++ VVA E GF D ERMRRAF Sbjct: 234 LSPRQFSRAFRDETRQSPAKAIEALRVEAARTMLEAGRHSMEVVAAETGFVDTERMRRAF 293 Query: 301 LRTFGVPPEVLRRNAR 316 LR FG PP+ ++R AR Sbjct: 294 LRAFGQPPQAIKRAAR 309