BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0024.p (380 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07026258.1| integrase family protein [Afipia sp. 1NLS2] >... 630 e-179 ref|ZP_08666312.1| integrase [Paracoccus sp. TRP] 619 e-175 ref|YP_002287248.1| phage integrase [Oligotropha carboxidovorans... 607 e-172 ref|YP_002277118.1| integrase family protein [Gluconacetobacter ... 606 e-171 ref|YP_001243551.1| putative phage integrase [Bradyrhizobium sp.... 603 e-170 >ref|ZP_07026258.1| integrase family protein [Afipia sp. 1NLS2] gb|EFI53400.1| integrase family protein [Afipia sp. 1NLS2] Length = 451 Score = 630 bits (1626), Expect = e-179, Method: Compositional matrix adjust. Identities = 310/380 (81%), Positives = 337/380 (88%), Gaps = 1/380 (0%) Query: 1 VQLGRVAGGDDPVEDRQLDHKAITVKELCARYFADLQAGLILGKGGRPKKASTIITDTGR 60 VQLGRVA GD+P E+RQLDHKAITVKELC Y DL AGLILGKGGRPKK +TI+TDTGR Sbjct: 73 VQLGRVAQGDNPAEERQLDHKAITVKELCTLYVNDLNAGLILGKGGRPKKPTTIVTDTGR 132 Query: 61 IERHIIPLIGTRRVKDLTKTDINKVLKDIMAGKTRVSVKTKKLRGKAIVRGGAGTATRTV 120 IERHIIPL+GTRRVKDLTK DINKVLKDIMAGKTRVSVKTKKLRGKAIVRGGAGTATRTV Sbjct: 133 IERHIIPLLGTRRVKDLTKADINKVLKDIMAGKTRVSVKTKKLRGKAIVRGGAGTATRTV 192 Query: 121 GLLGGILTYAVEAGIIESNSAHGVRKPKDNVRKRRLSEAEYRILGRMLRDAAKQEKYSTI 180 GLLGGILTYAVEAGII N AHG+RKPKDNVR RRL+EAEYR LG MLR A K+EKY+T Sbjct: 193 GLLGGILTYAVEAGIIAINPAHGLRKPKDNVRTRRLTEAEYRTLGEMLRTAEKEEKYATT 252 Query: 181 VDIVRQLALTGCRRSEMIGLKWAEADTEASCLRLEDSKEGDSIRPIGLPVVEYLERRRTD 240 V+I+RQ+ALTGCRRSEMIGL W EADT+ SCLRL DSKEG S+RPIGLPVVE+LE RR Sbjct: 253 VEIIRQIALTGCRRSEMIGLMWTEADTDRSCLRLVDSKEGTSVRPIGLPVVEFLEARRET 312 Query: 241 QVGTYVFPGQGGDNAFGSFPNHWKHIFEDSPLSDVTPHVLRHSFASIANDLGFTEVTIAA 300 G+YVFPG G DNAFGSFPNHW+ +F+ SPLSDVTPHVLRHSFASI NDLGFTEVTIAA Sbjct: 313 ASGSYVFPGYGDDNAFGSFPNHWEQVFKGSPLSDVTPHVLRHSFASIGNDLGFTEVTIAA 372 Query: 301 LMGHAKGSVTSKYIHTLDTALIMAADTISSYIQGLLDGIEFKQTAYALDRDSRKAALARF 360 L+GHAKGSVTSKYIHTLDTALIMAADTI+ YI+GLLDG EFKQTAYALDRDSRKAAL RF Sbjct: 373 LVGHAKGSVTSKYIHTLDTALIMAADTIAGYIEGLLDGKEFKQTAYALDRDSRKAALTRF 432 Query: 361 LKRASAGQQDAIEEKFNLAA 380 L++A AG++ + E LAA Sbjct: 433 LQKA-AGEEITVAEGERLAA 451 >ref|ZP_08666312.1| integrase [Paracoccus sp. TRP] Length = 448 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 304/380 (80%), Positives = 335/380 (88%), Gaps = 4/380 (1%) Query: 1 VQLGRVAGGDDPVEDRQLDHKAITVKELCARYFADLQAGLILGKGGRPKKASTIITDTGR 60 VQLGRVA G++P E+RQLDH+AITVKELCA Y ADL AGLILGKGGRPKK STI+TD GR Sbjct: 73 VQLGRVAKGENPSEERQLDHQAITVKELCALYVADLNAGLILGKGGRPKKPSTIVTDAGR 132 Query: 61 IERHIIPLIGTRRVKDLTKTDINKVLKDIMAGKTRVSVKTKKLRGKAIVRGGAGTATRTV 120 IERHIIPLIGTRRVKDL K DINKVLKDIMAGKTRVSVKTKKLRGKAIVRGGAGTATRTV Sbjct: 133 IERHIIPLIGTRRVKDLVKADINKVLKDIMAGKTRVSVKTKKLRGKAIVRGGAGTATRTV 192 Query: 121 GLLGGILTYAVEAGIIESNSAHGVRKPKDNVRKRRLSEAEYRILGRMLRDAAKQEKYSTI 180 GLLGGILTYAVEAGII+ N AHG++KPKDNVR RRL+EAEY ILG +LR+AA+ EKY+ Sbjct: 193 GLLGGILTYAVEAGIIDRNPAHGLKKPKDNVRNRRLTEAEYHILGDILRNAAETEKYAMT 252 Query: 181 VDIVRQLALTGCRRSEMIGLKWAEADTEASCLRLEDSKEGDSIRPIGLPVVEYLERRRTD 240 VDI+RQ+A+TGCRR+EMI L E D SCLRL DSKEG S+RPIGLPVVEYLE R D Sbjct: 253 VDIIRQIAMTGCRRTEMIRLMLTEVDAAGSCLRLVDSKEGASVRPIGLPVVEYLEERCKD 312 Query: 241 QVGTYVFPGQGGDNAFGSFPNHWKHIFEDSPLSDVTPHVLRHSFASIANDLGFTEVTIAA 300 GTYVFPGQG DNAFGSFPNHW+ IF+D+PL+DVTPHVLRHSFASI NDLGFTEVTIAA Sbjct: 313 LTGTYVFPGQGEDNAFGSFPNHWEQIFKDTPLADVTPHVLRHSFASIGNDLGFTEVTIAA 372 Query: 301 LMGHAKGSVTSKYIHTLDTALIMAADTISSYIQGLLDGIEFKQTAYALDRDSRKAALARF 360 L+GH+KGSVTSKYIH+LDTALIMAADTIS YI+GLLDG+ FKQTAYALDRDSRKAALARF Sbjct: 373 LVGHSKGSVTSKYIHSLDTALIMAADTISGYIKGLLDGVAFKQTAYALDRDSRKAALARF 432 Query: 361 LKRASAGQQDAIEEKFNLAA 380 L+ A+A +Q E+ LAA Sbjct: 433 LQSAAANEQ----EELPLAA 448 >ref|YP_002287248.1| phage integrase [Oligotropha carboxidovorans OM5] ref|YP_004631252.1| integrase [Oligotropha carboxidovorans OM5] gb|ACI91383.1| phage integrase [Oligotropha carboxidovorans OM5] gb|AEI01436.1| integrase [Oligotropha carboxidovorans OM4] gb|AEI05011.1| integrase [Oligotropha carboxidovorans OM5] Length = 451 Score = 607 bits (1566), Expect = e-172, Method: Compositional matrix adjust. Identities = 289/364 (79%), Positives = 326/364 (89%) Query: 1 VQLGRVAGGDDPVEDRQLDHKAITVKELCARYFADLQAGLILGKGGRPKKASTIITDTGR 60 VQLGRVA GD+P E+R LDH+AITVKELCA Y DL+AGLILGKGGRPKKA+TI++DTGR Sbjct: 73 VQLGRVAQGDNPSEERLLDHQAITVKELCAMYLKDLEAGLILGKGGRPKKATTIVSDTGR 132 Query: 61 IERHIIPLIGTRRVKDLTKTDINKVLKDIMAGKTRVSVKTKKLRGKAIVRGGAGTATRTV 120 I RHIIPLIGTRRVKDL K D+ KVLKDIMAGKT VSVKTKKLRGK++V GGAGTATRT+ Sbjct: 133 IHRHIIPLIGTRRVKDLVKADMTKVLKDIMAGKTAVSVKTKKLRGKSVVTGGAGTATRTL 192 Query: 121 GLLGGILTYAVEAGIIESNSAHGVRKPKDNVRKRRLSEAEYRILGRMLRDAAKQEKYSTI 180 GL+GGI TYA+EAGII +N HG+RKPKDNVR RRL+EAEYR LG +LR+AA+ KY Sbjct: 193 GLVGGIFTYAMEAGIITANPVHGIRKPKDNVRDRRLTEAEYRTLGEILREAAETPKYGIT 252 Query: 181 VDIVRQLALTGCRRSEMIGLKWAEADTEASCLRLEDSKEGDSIRPIGLPVVEYLERRRTD 240 V+I+RQ+ALTGCRRSEMIGLKW EADT+ASC+RLEDSKEG SIRPIGL VVEYLE RR Sbjct: 253 VEIIRQIALTGCRRSEMIGLKWTEADTDASCMRLEDSKEGASIRPIGLAVVEYLEERRKT 312 Query: 241 QVGTYVFPGQGGDNAFGSFPNHWKHIFEDSPLSDVTPHVLRHSFASIANDLGFTEVTIAA 300 G+YVFPGQG DNAFG FPNHW+ IF DSPL+DVTPHVLRHSFASIANDLGFTEVTIAA Sbjct: 313 ATGSYVFPGQGEDNAFGGFPNHWRQIFRDSPLADVTPHVLRHSFASIANDLGFTEVTIAA 372 Query: 301 LMGHAKGSVTSKYIHTLDTALIMAADTISSYIQGLLDGIEFKQTAYALDRDSRKAALARF 360 L+GH+KG+VTSKYIH+LDTALIMAADTIS Y+QGLLDG++FKQTAYALDR+SRKAAL+ F Sbjct: 373 LVGHSKGTVTSKYIHSLDTALIMAADTISGYVQGLLDGVKFKQTAYALDRNSRKAALSHF 432 Query: 361 LKRA 364 LK+A Sbjct: 433 LKKA 436 >ref|YP_002277118.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] gb|ACI52503.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] Length = 452 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 295/370 (79%), Positives = 323/370 (87%), Gaps = 1/370 (0%) Query: 1 VQLGRVAGGDDPVEDRQLDHKAITVKELCARYFADLQAGLILGKGGRPKKASTIITDTGR 60 VQLGRVA GD+P E+RQLDHKAITVKELCA Y DL AGLILGKGGRPKK TI+TD GR Sbjct: 73 VQLGRVAQGDNPAEERQLDHKAITVKELCALYLKDLNAGLILGKGGRPKKPHTIVTDIGR 132 Query: 61 IERHIIPLIGTRRVKDLTKTDINKVLKDIMAGKTRVSVKTKKLRGKAIVRGGAGTATRTV 120 I RHIIPL+GTRRVKDLTK DINK LKDIMAGKT VS+KT KLRGKAIV GGAGTATRT+ Sbjct: 133 INRHIIPLLGTRRVKDLTKADINKALKDIMAGKTAVSIKTSKLRGKAIVTGGAGTATRTI 192 Query: 121 GLLGGILTYAVEAGIIESNSAHGVRKPKDNVRKRRLSEAEYRILGRMLRDAAKQEKYSTI 180 GL GGILTYAVEAGII +N AHG+RKPKDNVR RRL+EAEYR LG ML A + EKY+T Sbjct: 193 GLFGGILTYAVEAGIITTNPAHGLRKPKDNVRTRRLTEAEYRTLGLMLTKAGEDEKYATT 252 Query: 181 VDIVRQLALTGCRRSEMIGLKWAEADTEASCLRLEDSKEGDSIRPIGLPVVEYLERRRTD 240 V+I+RQ+ALTGCRRSE+IGLKW EADTE SCLRL DSKEG S+RP+GLPVVE+LE +R Sbjct: 253 VEIIRQIALTGCRRSEVIGLKWVEADTEGSCLRLIDSKEGTSVRPVGLPVVEFLEAKREA 312 Query: 241 QVGTYVFPGQGGDNAFGSFPNHWKHIFEDSPLSDVTPHVLRHSFASIANDLGFTEVTIAA 300 GTYVFPG G DNAFG FPNHW+ IF+DSPLSDVTPHVLRHSFAS+ NDLGFTEVTIAA Sbjct: 313 ASGTYVFPGYGEDNAFGGFPNHWEQIFKDSPLSDVTPHVLRHSFASVGNDLGFTEVTIAA 372 Query: 301 LMGHAKGSVTSKYIHTLDTALIMAADTISSYIQGLLDGIEFKQTAYALDRDSRKAALARF 360 L+GH+KGSVTSKYIH LDTALIMAADTI+ YI GLLDG EFKQTAYALDR SRKAALARF Sbjct: 373 LVGHSKGSVTSKYIHALDTALIMAADTIAGYIDGLLDGKEFKQTAYALDRGSRKAALARF 432 Query: 361 LKRASAGQQD 370 L +A AG++D Sbjct: 433 LLKA-AGEED 441 >ref|YP_001243551.1| putative phage integrase [Bradyrhizobium sp. BTAi1] gb|ABQ39645.1| putative phage integrase [Bradyrhizobium sp. BTAi1] Length = 451 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 303/380 (79%), Positives = 336/380 (88%), Gaps = 1/380 (0%) Query: 1 VQLGRVAGGDDPVEDRQLDHKAITVKELCARYFADLQAGLILGKGGRPKKASTIITDTGR 60 VQLGRVA GD+P E+R+LDH+AITVKELC Y DL AGLILGK GRPKK +TI+TDTGR Sbjct: 73 VQLGRVAKGDNPAEERELDHRAITVKELCNLYLNDLSAGLILGKRGRPKKPTTIVTDTGR 132 Query: 61 IERHIIPLIGTRRVKDLTKTDINKVLKDIMAGKTRVSVKTKKLRGKAIVRGGAGTATRTV 120 I RHI+P+IGTRRVKDLTK D+ KVLKDIMAGKTR +VKTKKLRGK+IVRGG GTATRTV Sbjct: 133 IHRHIVPIIGTRRVKDLTKADVGKVLKDIMAGKTRTTVKTKKLRGKSIVRGGVGTATRTV 192 Query: 121 GLLGGILTYAVEAGIIESNSAHGVRKPKDNVRKRRLSEAEYRILGRMLRDAAKQEKYSTI 180 GLLGGILTYAVEAGIIE+N AHG+RKPKD VR RRLSEAEYR LG++LR+ +QEKY+T Sbjct: 193 GLLGGILTYAVEAGIIETNPAHGIRKPKDRVRTRRLSEAEYRTLGQLLREKGEQEKYTTT 252 Query: 181 VDIVRQLALTGCRRSEMIGLKWAEADTEASCLRLEDSKEGDSIRPIGLPVVEYLERRRTD 240 VDIVRQ+ALTGCRRSE+I L+W+E DTEASCLRLEDSKEG+SIR IGLPVVEYLERRR Sbjct: 253 VDIVRQIALTGCRRSEIIQLRWSEVDTEASCLRLEDSKEGESIRAIGLPVVEYLERRRAC 312 Query: 241 QVGTYVFPGQGGDNAFGSFPNHWKHIFEDSPLSDVTPHVLRHSFASIANDLGFTEVTIAA 300 VGTYVFPGQG DNAFGSFPNHWK IF+ SPL+D+TPHVLRHSFASIANDLGFTEVTIAA Sbjct: 313 AVGTYVFPGQGEDNAFGSFPNHWKQIFKKSPLADITPHVLRHSFASIANDLGFTEVTIAA 372 Query: 301 LMGHAKGSVTSKYIHTLDTALIMAADTISSYIQGLLDGIEFKQTAYALDRDSRKAALARF 360 L+GHAKGSVTSKYIHTLDTALIMAADTI+ YIQGLLDG+ FKQTAYA+DRDSRKA+LARF Sbjct: 373 LVGHAKGSVTSKYIHTLDTALIMAADTIAGYIQGLLDGVTFKQTAYAIDRDSRKASLARF 432 Query: 361 LKRASAGQQDAIEEKFNLAA 380 A+ G E+ LAA Sbjct: 433 F-HAAVGDCRMKNEEAPLAA 451