BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0021.p (457 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001207012.1| putative two-component sensor histidine kina... 594 e-167 ref|YP_001241437.1| putative two-component sensor histidine kina... 563 e-158 ref|YP_577156.1| periplasmic sensor signal transduction histidin... 539 e-151 ref|ZP_07028558.1| integral membrane sensor signal transduction ... 521 e-146 ref|YP_534772.1| periplasmic sensor signal transduction histidin... 490 e-136 >ref|YP_001207012.1| putative two-component sensor histidine kinase [Bradyrhizobium sp. ORS 278] emb|CAL78795.1| Putative Two-component sensor histidine kinase [Bradyrhizobium sp. ORS 278] Length = 472 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 312/446 (69%), Positives = 359/446 (80%), Gaps = 1/446 (0%) Query: 1 LRLRLVAGGMIAILVALGVAGAGFVVLFQRHVSRAMAADLDVHLRQLLAGIDVGSDGHLI 60 LRLRLVA G IAILVALGVAGAG VVLF+RHV+R +A+DLDVHLRQLL G++V +DG + Sbjct: 6 LRLRLVAAGTIAILVALGVAGAGMVVLFKRHVARTLASDLDVHLRQLLNGLEVDADGRIA 65 Query: 61 INRQPADPRFEEPLSGLYWQVTDDREQMLRSRSLWDTTLRLPPDEPGPSEVHQHEVNGPG 120 + R PADPRF PLSGLYWQ++DD Q+LRSRSLWDT L LP DEPGPS+VHQHE+ GP Sbjct: 66 VPRPPADPRFTVPLSGLYWQISDDHGQLLRSRSLWDTILPLPIDEPGPSDVHQHELIGPV 125 Query: 121 DARVLVAERGVLMTVGDRRVRVRTAVASDLSRAAVAVKAFAKDLFVALALLAAVLAIATS 180 ARVLVAERG+LM D ++RVR AVA DL A AV+ FAKDL +ALA+LA +LA+ TS Sbjct: 126 GARVLVAERGILMN-PDSQIRVRAAVAYDLDGATSAVRTFAKDLSIALAVLAIILAVGTS 184 Query: 181 VQVSLGLRPLAVLRRGISEIRAGHRKRLPAAVPSEVGPLVEEVNALIDAQEREIARSRGR 240 VQVSLGL+PLAVLRRG++EIR+G R+ LP VP+EV PLVEEVNAL+DAQ REI RSR R Sbjct: 185 VQVSLGLQPLAVLRRGVAEIRSGQRRHLPMQVPTEVAPLVEEVNALLDAQSREILRSRSR 244 Query: 241 AADLAHGFKTPLAALTSDAARLRERGDDKTAEDIEAVADAMSRHVDRELALARLRSGTGS 300 AADLAHGFKTPLAAL +DAARL++ G + A ++E VA+AMSR VDRELALARLR Sbjct: 245 AADLAHGFKTPLAALIADAARLKQLGQLELARNVEDVAEAMSRQVDRELALARLRGKLRG 304 Query: 301 TGAAMSELRPLVSSLLTTLARTSSGEKILFERSIPEGLRIPLDRTDLAEVLGNLLENAAR 360 AA +EL PLV +LL TLART + + FE +P GLR+P+DRTDLAEVLGNLLENAAR Sbjct: 305 EPAAATELGPLVEALLGTLARTPAAAHVSFEGQVPAGLRVPMDRTDLAEVLGNLLENAAR 364 Query: 361 HAKARVRIAAIADPLSVVVEDDGEGIPEDQIARVLERGGRLDEQGSGSGLGLAIVQDVLE 420 HA + VRI A A PL V VEDDG GIP+ QI RVLERGGRLDEQG GSGLGLAIVQDVLE Sbjct: 365 HAASTVRIVAGASPLVVTVEDDGPGIPDAQIGRVLERGGRLDEQGPGSGLGLAIVQDVLE 424 Query: 421 AYRWHLQITRSELGGARVTIAPDTDP 446 AY W LQI R+ELGGAR+ IAP P Sbjct: 425 AYGWRLQIGRAELGGARIAIAPAMVP 450 >ref|YP_001241437.1| putative two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ37531.1| Putative Two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1] Length = 471 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 306/442 (69%), Positives = 357/442 (80%), Gaps = 1/442 (0%) Query: 1 LRLRLVAGGMIAILVALGVAGAGFVVLFQRHVSRAMAADLDVHLRQLLAGIDVGSDGHLI 60 LRLRLVA G IA+LVALGVAG G VVLF+RHV+R +AADLD+HLRQLL G+++ +G ++ Sbjct: 6 LRLRLVAAGTIALLVALGVAGFGMVVLFKRHVARTLAADLDIHLRQLLNGLELDPEGRIM 65 Query: 61 INRQPADPRFEEPLSGLYWQVTDDREQMLRSRSLWDTTLRLPPDEPGPSEVHQHEVNGPG 120 ++R PADPRF PLSGLYWQ++DDR Q+LRSRSLWD L LP DEPGP++VHQHE+ GP Sbjct: 66 VSRPPADPRFTVPLSGLYWQISDDRGQLLRSRSLWDAILPLPIDEPGPTDVHQHELAGPD 125 Query: 121 DARVLVAERGVLMTVGDRRVRVRTAVASDLSRAAVAVKAFAKDLFVALALLAAVLAIATS 180 ARVLVAERG+LM +R+ RVR AVA DL A AV+ FAKDL +ALA+LA +LA+ TS Sbjct: 126 GARVLVAERGILMNP-ERQSRVRAAVAYDLDGATSAVRTFAKDLSIALAVLAFILAVGTS 184 Query: 181 VQVSLGLRPLAVLRRGISEIRAGHRKRLPAAVPSEVGPLVEEVNALIDAQEREIARSRGR 240 VQVSLGLRPLAVLRRG++EIR+G R+ LP VP+EV PLVEEVNAL+DAQ+REI RSR R Sbjct: 185 VQVSLGLRPLAVLRRGVAEIRSGKRRHLPVEVPTEVAPLVEEVNALLDAQQREITRSRSR 244 Query: 241 AADLAHGFKTPLAALTSDAARLRERGDDKTAEDIEAVADAMSRHVDRELALARLRSGTGS 300 AADLAHGFKTPLAAL +DAARLRE G + A ++E VADAMSR VDRELALARLR Sbjct: 245 AADLAHGFKTPLAALAADAARLRELGQLELARNVEDVADAMSRQVDRELALARLRGKVRG 304 Query: 301 TGAAMSELRPLVSSLLTTLARTSSGEKILFERSIPEGLRIPLDRTDLAEVLGNLLENAAR 360 A +EL PLV +LL TL RT + + F+ ++P G+R+ +DRTDLAEVLGNLLENAAR Sbjct: 305 GPEAATELAPLVDALLGTLGRTPAAAHVSFDGAVPPGMRLAMDRTDLAEVLGNLLENAAR 364 Query: 361 HAKARVRIAAIADPLSVVVEDDGEGIPEDQIARVLERGGRLDEQGSGSGLGLAIVQDVLE 420 HA + VRI A PL V VEDDG GIP+ QI RVLERGGRLDEQG GSGLGLAIVQDVLE Sbjct: 365 HAVSTVRIFASVSPLFVSVEDDGPGIPDAQIGRVLERGGRLDEQGPGSGLGLAIVQDVLE 424 Query: 421 AYRWHLQITRSELGGARVTIAP 442 AY W LQI RSELGGAR+TIAP Sbjct: 425 AYGWRLQIGRSELGGARITIAP 446 >ref|YP_577156.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gb|ABE62696.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 484 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 282/450 (62%), Positives = 345/450 (76%), Gaps = 3/450 (0%) Query: 1 LRLRLVAGGMIAILVALGVAGAGFVVLFQRHVSRAMAADLDVHLRQLLAGIDVGSDGHLI 60 LRLRLVAGG++AIL+AL +AG +VLF+RHVSR +A DLDVHL+QLLAGIDV G L+ Sbjct: 6 LRLRLVAGGLMAILIALAIAGGALIVLFERHVSRTLAQDLDVHLKQLLAGIDVDPQGKLV 65 Query: 61 INRQPADPRFEEPLSGLYWQVTDDREQMLRSRSLWDTTLRLPPDEPGPSEVHQHEVNGPG 120 + P DPRF EPLSGLYWQV DDR Q+LRSRSLWD+T+ LP D P E HQH+ +GPG Sbjct: 66 LMPTPVDPRFAEPLSGLYWQVGDDRGQLLRSRSLWDSTMELPADRLSPGETHQHQASGPG 125 Query: 121 DARVLVAERGVLMTVGDRRVRVRTAVASDLSRAAVAVKAFAKDLFVALALLAAVLAIATS 180 D RVLVAER + ++ + V VR AVA +L+R + A AFAKDL +AL LL VLA+AT Sbjct: 126 DQRVLVAERAITLSADGKPVIVRFAVAENLARVSAATSAFAKDLALALVLLGCVLALATW 185 Query: 181 VQVSLGLRPLAVLRRGISEIRAGHRKRLPAAVPSEVGPLVEEVNALIDAQEREIARSRGR 240 VQV +GL PL LRRG+++IRAG + LP++VP+EV PLVEEVNA IDAQ+REI RSRGR Sbjct: 186 VQVGVGLHPLVTLRRGVADIRAGRIRHLPSSVPTEVRPLVEEVNAFIDAQKREIERSRGR 245 Query: 241 AADLAHGFKTPLAALTSDAARLRERGDDKTAEDIEAVADAMSRHVDRELALARLRSGTGS 300 AADLAHG KTPLAAL +DA+RLR+RG+ A DIEAV +AM RHVDRELA AR+R T Sbjct: 246 AADLAHGLKTPLAALAADASRLRDRGEPAIARDIEAVGEAMGRHVDRELARARVRGRTRG 305 Query: 301 TGAAMSELRPLVSSLLTTLARTSSGEKILFERSIPEGLRIPLDRTDLAEVLGNLLENAAR 360 AA + ++PLV S++ T++RT G ++ FE I + L +PLDRTDLAEVLGNL+ENAAR Sbjct: 306 VPAASTSVKPLVESIVATVSRTPDGARVRFENLIADHLCVPLDRTDLAEVLGNLIENAAR 365 Query: 361 HAKARVRIAAIADPLSVVVEDDGEGIPEDQIARVLERGGRLDEQGSGSGLGLAIVQDVLE 420 HA VRI LS+VVEDDGEGI ++RVL RG RLDE+GSG+GLGLAIVQDVL+ Sbjct: 366 HAGRSVRITD-GSQLSLVVEDDGEGIEPSHLSRVLARGARLDERGSGAGLGLAIVQDVLD 424 Query: 421 AYRWHLQITRSELGGARVTIAP--DTDPNS 448 AY W L+++RSELGG + IAP ++DP S Sbjct: 425 AYGWRLELSRSELGGLKAVIAPMSESDPLS 454 >ref|ZP_07028558.1| integral membrane sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gb|EFI49981.1| integral membrane sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 470 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 273/442 (61%), Positives = 334/442 (75%) Query: 1 LRLRLVAGGMIAILVALGVAGAGFVVLFQRHVSRAMAADLDVHLRQLLAGIDVGSDGHLI 60 L+LRLVAGG++AIL+ALG+AG VV+F+RHVSR + DLDVHL+QLLA IDV G L+ Sbjct: 6 LKLRLVAGGIVAILIALGIAGGALVVVFERHVSRTLTQDLDVHLKQLLANIDVDPQGKLV 65 Query: 61 INRQPADPRFEEPLSGLYWQVTDDREQMLRSRSLWDTTLRLPPDEPGPSEVHQHEVNGPG 120 + + P DPRF +PLSGLYWQV DD Q+LRSRSLWD+T+ LP D P E HQHE GPG Sbjct: 66 LTQTPVDPRFADPLSGLYWQVGDDHGQLLRSRSLWDSTMELPADRLAPGETHQHEAVGPG 125 Query: 121 DARVLVAERGVLMTVGDRRVRVRTAVASDLSRAAVAVKAFAKDLFVALALLAAVLAIATS 180 RVLVAER + ++ G + V +R AVA DL+R A A AFAKDL +AL LL VLA+AT Sbjct: 126 GKRVLVAERAITLSAGGKPVTIRLAVAEDLARVADAGSAFAKDLSIALVLLGCVLALATW 185 Query: 181 VQVSLGLRPLAVLRRGISEIRAGHRKRLPAAVPSEVGPLVEEVNALIDAQEREIARSRGR 240 VQV +GLRPL LRRG+++IRAG RLPA+VP+EV PLVEEVNALIDAQE EI RSRGR Sbjct: 186 VQVEVGLRPLVGLRRGVADIRAGRIHRLPASVPTEVHPLVEEVNALIDAQEHEIERSRGR 245 Query: 241 AADLAHGFKTPLAALTSDAARLRERGDDKTAEDIEAVADAMSRHVDRELALARLRSGTGS 300 AADLAHG KTPLAAL +D++RLRERG+ AEDIEAV +AM RHVDRELA AR+R Sbjct: 246 AADLAHGLKTPLAALAADSSRLRERGEHDIAEDIEAVGEAMGRHVDRELARARVRGRARG 305 Query: 301 TGAAMSELRPLVSSLLTTLARTSSGEKILFERSIPEGLRIPLDRTDLAEVLGNLLENAAR 360 A + +RPLV S++ T++RT G ++ FE + + L +PLDRTDLAE+LGNL+ENAAR Sbjct: 306 GAATSASVRPLVGSIVATVSRTPEGAQVRFENLVADDLCLPLDRTDLAEILGNLIENAAR 365 Query: 361 HAKARVRIAAIADPLSVVVEDDGEGIPEDQIARVLERGGRLDEQGSGSGLGLAIVQDVLE 420 HA VRI + SV VEDDG GI + RV+ERG R+DE+G +GLGLAI QDVL+ Sbjct: 366 HAAECVRITTDENRPSVAVEDDGAGIEPTHLLRVIERGTRVDERGGTAGLGLAIAQDVLD 425 Query: 421 AYRWHLQITRSELGGARVTIAP 442 AY W L++++SELGG + TIAP Sbjct: 426 AYEWGLELSKSELGGLKATIAP 447 >ref|YP_534772.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gb|ABD90453.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 450 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 274/444 (61%), Positives = 332/444 (74%), Gaps = 2/444 (0%) Query: 1 LRLRLVAGGMIAILVALGVAGAGFVVLFQRHVSRAMAADLDVHLRQLLAGIDVGSDGHLI 60 LRLRL+AGG AIL+AL VAG G VLF+RHV+R++ DLDVHL+QLLAG+DV +DG I Sbjct: 6 LRLRLIAGGAAAILIALTVAGFGLTVLFERHVTRSVVDDLDVHLKQLLAGLDVDADGKPI 65 Query: 61 INRQPADPRFEEPLSGLYWQVTDDREQMLRSRSLWDTTLRLPPDEPGPSEVHQHEVNGPG 120 + R PADPRF +PLSGLYWQ++DDR ++LRSRSLWD+ L LP DE EVH H + GP Sbjct: 66 VARPPADPRFSDPLSGLYWQISDDRSELLRSRSLWDSMLALPADEVASGEVHHHTLKGPA 125 Query: 121 DARVLVAERGVLMTVGDRRVRVRTAVASDLSRAAVAVKAFAKDLFVALALLAAVLAIATS 180 A+++ AER V +T+ D+ VR AVA D++R + A AFAKD+ VAL +L VLAIATS Sbjct: 126 GAQLMTAERQVTLTLRDQPTAVRAAVAIDMARVSAASAAFAKDMVVALGILGVVLAIATS 185 Query: 181 VQVSLGLRPLAVLRRGISEIRAGHRKRLPAAVPSEVGPLVEEVNALIDAQEREIARSRGR 240 VQV LGLRPL LR GI+++R+GH +RLPAAVP+EV PLVEEVN L+ AQEREI RSRGR Sbjct: 186 VQVMLGLRPLDALRHGIADVRSGHSRRLPAAVPTEVLPLVEEVNGLLAAQEREIERSRGR 245 Query: 241 AADLAHGFKTPLAALTSDAARLRERGDDKTAEDIEAVADAMSRHVDRELALARLRSGTGS 300 AADLAHG KTPLAAL +DA RLRERG+ A DIEAV DAMSRHVDRELA AR+R G Sbjct: 246 AADLAHGLKTPLAALAADAGRLRERGEAGLARDIEAVGDAMSRHVDRELARARVRGEPGR 305 Query: 301 TGAAMSELRPLVSSLLTTLARTSSGEKILFERSIPEGLRIPLDRTDLAEVLGNLLENAAR 360 + +EL PL SL+ L+RT +G I F+ + + + +PLDR DLAEVLGNLL+NA R Sbjct: 306 SLGVATELAPLTRSLVAILSRTPAGAAIGFDIQVADDVTLPLDRADLAEVLGNLLDNATR 365 Query: 361 HAKARVRIAAIADP--LSVVVEDDGEGIPEDQIARVLERGGRLDEQGSGSGLGLAIVQDV 418 HA ++VRI A AD L VV+EDDG GI + LERG RLD++G GSGLGLAIVQDV Sbjct: 366 HAASKVRIVAAADAGGLGVVIEDDGAGIAAAARSAALERGIRLDQRGEGSGLGLAIVQDV 425 Query: 419 LEAYRWHLQITRSELGGARVTIAP 442 LEAY W L + SELGG + + P Sbjct: 426 LEAYDWTLSLEVSELGGLKASCRP 449