BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0012.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_768585.1| hypothetical protein blr1945 [Bradyrhizobium ja...   210   6e-53
ref|YP_002277137.1| hypothetical protein Gdia_2789 [Gluconacetob...   202   9e-51
ref|ZP_07026232.1| conserved hypothetical protein [Afipia sp. 1N...   199   9e-50
ref|NP_766701.1| hypothetical protein bll0061 [Bradyrhizobium ja...   192   1e-47
ref|ZP_06888625.1| conserved hypothetical protein [Methylosinus ...   181   3e-44

>ref|NP_768585.1| hypothetical protein blr1945 [Bradyrhizobium japonicum USDA 110]
 gb|AAG60923.1|AF322013_42 ID529 [Bradyrhizobium japonicum]
 dbj|BAC47210.1| blr1945 [Bradyrhizobium japonicum USDA 110]
          Length = 185

 Score =  210 bits (534), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 111/146 (76%), Positives = 121/146 (82%)

Query: 1   MTIFGPLLVILAIGFFGWLLFTLAVCALPFFAGVTIGMWAFHTGAGVLGGIAVALVAGGA 60
           M   GPLLV L IGFF WLLFTLAV ALP FAGVTIG+WAFHTGAG LGGIAV  VAG A
Sbjct: 40  MITLGPLLVFLVIGFFAWLLFTLAVFALPVFAGVTIGLWAFHTGAGALGGIAVGPVAGAA 99

Query: 61  TFGIGQLALAFVTCTWLRLLIILLYVAPATFAGYSAAHGIAQIAMPSPAWQTIFGVVGAI 120
           TFGIGQLALA VT TWLRL +I+ YVAPAT AGYSA HGIAQ+AM SP WQT+F VVGA+
Sbjct: 100 TFGIGQLALALVTWTWLRLFVIIFYVAPATVAGYSATHGIAQMAMSSPTWQTVFAVVGAV 159

Query: 121 AVSITAFVRLTGMAAGGPAKHRLTRG 146
           A+SITAF+R TG+AA GPA+ RL RG
Sbjct: 160 AISITAFIRFTGIAADGPARQRLPRG 185


>ref|YP_002277137.1| hypothetical protein Gdia_2789 [Gluconacetobacter diazotrophicus
           PAl 5]
 gb|ACI52522.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 146

 Score =  202 bits (515), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 109/146 (74%), Positives = 121/146 (82%)

Query: 1   MTIFGPLLVILAIGFFGWLLFTLAVCALPFFAGVTIGMWAFHTGAGVLGGIAVALVAGGA 60
           M IFGPLLV++ IGFF WLLFTLAV ALPFF G+T+G+WAFHTGAGVLGGI V +VAGGA
Sbjct: 1   MIIFGPLLVLVGIGFFCWLLFTLAVFALPFFVGLTVGIWAFHTGAGVLGGILVGIVAGGA 60

Query: 61  TFGIGQLALAFVTCTWLRLLIILLYVAPATFAGYSAAHGIAQIAMPSPAWQTIFGVVGAI 120
           TFGIGQ AL F+  TWLRLLIILL+VAPAT AGYSA HGIAQ+AMPS  WQ IF V+GAI
Sbjct: 61  TFGIGQFALGFIPWTWLRLLIILLFVAPATVAGYSATHGIAQMAMPSTTWQMIFSVIGAI 120

Query: 121 AVSITAFVRLTGMAAGGPAKHRLTRG 146
           AVS+TAFVR  GM A GPA   + RG
Sbjct: 121 AVSVTAFVRFAGMTAPGPAGQGMVRG 146


>ref|ZP_07026232.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gb|EFI53374.1| conserved hypothetical protein [Afipia sp. 1NLS2]
          Length = 144

 Score =  199 bits (507), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 112/146 (76%), Positives = 121/146 (82%), Gaps = 2/146 (1%)

Query: 1   MTIFGPLLVILAIGFFGWLLFTLAVCALPFFAGVTIGMWAFHTGAGVLGGIAVALVAGGA 60
           M +FGPLLVI+ IGF  WLLFTLA+ ALPFFAG+TIG+WAFHTG GVLGGIAV LVAGG 
Sbjct: 1   MILFGPLLVIVGIGFICWLLFTLAIFALPFFAGLTIGIWAFHTGPGVLGGIAVGLVAGGV 60

Query: 61  TFGIGQLALAFVTCTWLRLLIILLYVAPATFAGYSAAHGIAQIAMPSPAWQTIFGVVGAI 120
           TFG+GQLALA V   W RLLIILLYVAPAT AGYSA HGIAQ+AMPSP WQTIF V+GA+
Sbjct: 61  TFGLGQLALAVVPWAWARLLIILLYVAPATVAGYSATHGIAQMAMPSPTWQTIFAVIGAV 120

Query: 121 AVSITAFVRLTGMAAGGPAKHRLTRG 146
           AV  TAFVR TGMAA GPA   L RG
Sbjct: 121 AV--TAFVRFTGMAAPGPAGQGLARG 144


>ref|NP_766701.1| hypothetical protein bll0061 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45326.1| bll0061 [Bradyrhizobium japonicum USDA 110]
          Length = 174

 Score =  192 bits (489), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/140 (75%), Positives = 114/140 (81%)

Query: 1   MTIFGPLLVILAIGFFGWLLFTLAVCALPFFAGVTIGMWAFHTGAGVLGGIAVALVAGGA 60
           M   GPLL+ LAIGFF WLLFTLAV A+P FAGVTIG+ AFHTGAG LGGIAVA  AG  
Sbjct: 35  MIALGPLLIFLAIGFFAWLLFTLAVFAVPVFAGVTIGLRAFHTGAGALGGIAVAFAAGAV 94

Query: 61  TFGIGQLALAFVTCTWLRLLIILLYVAPATFAGYSAAHGIAQIAMPSPAWQTIFGVVGAI 120
           TFGIGQLALA VT  WLRLLII+LYVAPAT AGYSA HGIAQ+AM SP WQT+F + GA+
Sbjct: 95  TFGIGQLALALVTWAWLRLLIIILYVAPATVAGYSATHGIAQMAMSSPTWQTVFAIAGAV 154

Query: 121 AVSITAFVRLTGMAAGGPAK 140
           AVSITA  R TGMAA GPA+
Sbjct: 155 AVSITALARFTGMAADGPAR 174


>ref|ZP_06888625.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
 gb|EFH02893.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
          Length = 146

 Score =  181 bits (459), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/145 (67%), Positives = 112/145 (77%)

Query: 1   MTIFGPLLVILAIGFFGWLLFTLAVCALPFFAGVTIGMWAFHTGAGVLGGIAVALVAGGA 60
           M IFGPLLVI  IGFF WLLFTLAV ALPF+AG+T+G WAFHTGAG LGG  V ++A G 
Sbjct: 1   MIIFGPLLVITGIGFFCWLLFTLAVFALPFYAGLTVGSWAFHTGAGWLGGAIVGVIAAGV 60

Query: 61  TFGIGQLALAFVTCTWLRLLIILLYVAPATFAGYSAAHGIAQIAMPSPAWQTIFGVVGAI 120
           TFG+GQLALAFV  TWLRL I+++Y APAT AGY A HGIAQ+AMPS  WQ IF +VGA 
Sbjct: 61  TFGVGQLALAFVPWTWLRLAIVIVYAAPATVAGYYATHGIAQMAMPSATWQMIFSLVGAA 120

Query: 121 AVSITAFVRLTGMAAGGPAKHRLTR 145
           AV ITAF+R+TG    G  + RL R
Sbjct: 121 AVGITAFIRITGATPPGREETRLAR 145