BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0009.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774944.1| hypothetical protein bll8304 [Bradyrhizobium ja...   277   4e-73
ref|YP_001240877.1| hypothetical protein BBta_4957 [Bradyrhizobi...   166   8e-40
ref|YP_345428.1| hypothetical protein RSP_4245 [Rhodobacter spha...    65   5e-09
ref|YP_002754623.1| hypothetical protein ACP_1542 [Acidobacteriu...    63   1e-08
ref|YP_576655.1| sigma-24 (FecI-like) [Nitrobacter hamburgensis ...    59   3e-07

>ref|NP_774944.1| hypothetical protein bll8304 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53569.1| bll8304 [Bradyrhizobium japonicum USDA 110]
          Length = 158

 Score =  277 bits (708), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 137/139 (98%), Positives = 138/139 (99%)

Query: 8   LVEAIARVLDGSRPWPPDVPILAFLSGVMRSICNDHWRRARLEQRLLVSRDDPDQRSWPG 67
           L +AIARVLDGSRPWPPDVPILAFLSGVMRSICNDHWRRARLEQRLLVSRDDPDQRSWPG
Sbjct: 20  LHKAIARVLDGSRPWPPDVPILAFLSGVMRSICNDHWRRARLEQRLLVSRDDPDQRSWPG 79

Query: 68  DEADEEPDPERILAAAQKLANVYRLFEADPRALKIIAGMADGLTAREICKVHDMSELDYD 127
           DEADEEPDPERILAAAQKLANVYRLFEADPRALKIIAGMADGLTAREICKVHDMSELDYD
Sbjct: 80  DEADEEPDPERILAAAQKLANVYRLFEADPRALKIIAGMADGLTAREICKVHDMSELDYD 139

Query: 128 TTRRRMRRTLLRHQQNWSK 146
           TTRRRMRRTLLRHQQNWSK
Sbjct: 140 TTRRRMRRTLLRHQQNWSK 158


>ref|YP_001240877.1| hypothetical protein BBta_4957 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36971.1| hypothetical protein BBta_4957 [Bradyrhizobium sp. BTAi1]
          Length = 226

 Score =  166 bits (421), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 92/139 (66%), Positives = 105/139 (75%)

Query: 8   LVEAIARVLDGSRPWPPDVPILAFLSGVMRSICNDHWRRARLEQRLLVSRDDPDQRSWPG 67
           L EAI RVLDGSR WP  VPILAFLSGVMRS+C+D+WRR R EQRLLVSRDDP Q S P 
Sbjct: 87  LHEAILRVLDGSRVWPLGVPILAFLSGVMRSLCHDYWRRVRSEQRLLVSRDDPGQHSVPS 146

Query: 68  DEADEEPDPERILAAAQKLANVYRLFEADPRALKIIAGMADGLTAREICKVHDMSELDYD 127
           D  DE  D ER+  A   LA V+RLF  D   L+II G+A+GLTAREIC+ + +S +DYD
Sbjct: 147 DPVDELADTERVAVAVAGLAEVFRLFAGDRVVLQIIDGLANGLTAREICRAYGISAIDYD 206

Query: 128 TTRRRMRRTLLRHQQNWSK 146
           T RRRMRR LLRHQ+NWS 
Sbjct: 207 TARRRMRRALLRHQRNWST 225


>ref|YP_345428.1| hypothetical protein RSP_4245 [Rhodobacter sphaeroides 2.4.1]
 gb|ABA81687.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 189

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 17/136 (12%)

Query: 10  EAIARVLDGSRPWPPDVPILAFLSGVMRSICNDHWRRARLEQRLLVSRDDPDQRSWPGDE 69
           EA+ R LD  R  P DVPI+ FL GV+RS+ +    +  L       R   D     G++
Sbjct: 49  EALVRALDDRRSCPADVPIMRFLIGVIRSLASGEREKDAL-------RHPADASEAVGED 101

Query: 70  ADE------EPDPERILAAAQKLANV----YRLFEADPRALKIIAGMADGLTAREICKVH 119
            D        PD E IL   ++ A +    + LF+ DP A  I+ G+ +GLTA E+ ++ 
Sbjct: 102 GDVLEIQDLGPDAEAILIRDEEDARIRAAFFTLFDDDPVAQDILVGIMEGLTAEELRELT 161

Query: 120 DMSELDYDTTRRRMRR 135
            +    Y+T RR MRR
Sbjct: 162 GLDVTAYNTKRRLMRR 177


>ref|YP_002754623.1| hypothetical protein ACP_1542 [Acidobacterium capsulatum ATCC
           51196]
 gb|ACO31677.1| conserved domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 213

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 15/145 (10%)

Query: 6   RQLVE-AIARVLDGSRPW-PPDVPILAFLSGVMRSICNDHWRRAR------LEQRLLVSR 57
           R LV+ A+  +L+  R W P  V  +  + G M+SI ++H  +++       E +L+   
Sbjct: 55  RDLVQRAVTELLEQRRTWNPKKVGFVGVVIGAMKSISSNHKEKSQKSGYSVAESQLVSPE 114

Query: 58  DDPDQRSWPGDEADEEPDPERILAAAQK-------LANVYRLFEADPRALKIIAGMADGL 110
           +D D  S   D AD   +PE+ + +A+        + +VY  FE DP A  ++ G  +GL
Sbjct: 115 EDDDSESSVMDHADSRMNPEQQVISAEGKKDVLRLVGDVYDFFEDDPEARLVMDGWQEGL 174

Query: 111 TAREICKVHDMSELDYDTTRRRMRR 135
           +  EI    ++    Y+T  RR+RR
Sbjct: 175 SGSEIMAALEIDRKGYETIARRIRR 199


>ref|YP_576655.1| sigma-24 (FecI-like) [Nitrobacter hamburgensis X14]
 gb|ABE62195.1| sigma-24 (FecI-like) [Nitrobacter hamburgensis X14]
          Length = 192

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 17/142 (11%)

Query: 5   DRQLVEAIARVLDGSRPWPPDVPILAFLSGVMRSICNDHW--RRARLEQRLLVSRDDPDQ 62
           D  L EAI R  DG R +P DV  +AFL   MRSI ++ +  RR R      +  D+   
Sbjct: 45  DELLNEAIMRTADGRRHYPNDVQPVAFLIMTMRSIAHEMYENRRGR------IGLDNATT 98

Query: 63  RSWPGD-----EADEEPDPERILAAAQ---KL-ANVYRLFEADPRALKIIAGMADGLTAR 113
            +  G+       D+ PDPE  LA A+   K  ++V  LFE D  A  +  G+ +G+   
Sbjct: 99  TNIRGNVVPFQPTDQRPDPEISLAQAEFEKKFRSDVLGLFEDDTIARDLADGVMEGMEGE 158

Query: 114 EICKVHDMSELDYDTTRRRMRR 135
           E+  V D+ +  + + RR +RR
Sbjct: 159 ELMTVLDLDKTAFASKRRLVRR 180