BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0008.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774943.1| hypothetical protein blr8303 [Bradyrhizobium ja...   249   1e-64
ref|NP_766703.1| hypothetical protein bll0063 [Bradyrhizobium ja...   236   1e-60
ref|YP_002277134.1| hypothetical protein Gdia_2786 [Gluconacetob...   233   5e-60
ref|ZP_07026242.1| Protein of unknown function DUF2493 [Afipia s...   230   4e-59
ref|NP_768576.1| hypothetical protein blr1936 [Bradyrhizobium ja...   228   3e-58

>ref|NP_774943.1| hypothetical protein blr8303 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53568.1| blr8303 [Bradyrhizobium japonicum USDA 110]
          Length = 309

 Score =  249 bits (635), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MPPGPKVALTGGLDFNDHRLIWAKLDQVHAKHADMVLLHGGSPKGAELIAAKWAGNRKVP 60
           MPPGPKVALTGGLDFNDHRLIWAKLDQVHAKHADMVLLHGGSPKGAELIAAKWAGNRKVP
Sbjct: 190 MPPGPKVALTGGLDFNDHRLIWAKLDQVHAKHADMVLLHGGSPKGAELIAAKWAGNRKVP 249

Query: 61  QIAFKPDWTKHAKAAPFKRNDAMLETLPIGVIHFPGTGIQDNLADKAKKLGIPVWRFGGA 120
           QIAFKPDWTKHAKAAPFKRNDAMLETLPIGVIHFPGTGIQDNLADKAKKLGIPVWRFGGA
Sbjct: 250 QIAFKPDWTKHAKAAPFKRNDAMLETLPIGVIHFPGTGIQDNLADKAKKLGIPVWRFGGA 309


>ref|NP_766703.1| hypothetical protein bll0063 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45328.1| bll0063 [Bradyrhizobium japonicum USDA 110]
          Length = 309

 Score =  236 bits (602), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/120 (94%), Positives = 117/120 (97%)

Query: 1   MPPGPKVALTGGLDFNDHRLIWAKLDQVHAKHADMVLLHGGSPKGAELIAAKWAGNRKVP 60
           MP GPKVALTGGLDFND+RLIWAKLDQVHAKH DMVLLHGGSPKGAELIAAKWA NRKVP
Sbjct: 190 MPRGPKVALTGGLDFNDYRLIWAKLDQVHAKHPDMVLLHGGSPKGAELIAAKWADNRKVP 249

Query: 61  QIAFKPDWTKHAKAAPFKRNDAMLETLPIGVIHFPGTGIQDNLADKAKKLGIPVWRFGGA 120
           QIAFKPDWTKHAKAAPFKRNDAMLETLPIGV+HFPGTGIQDNLADKAKKLGIPVWR+GG+
Sbjct: 250 QIAFKPDWTKHAKAAPFKRNDAMLETLPIGVMHFPGTGIQDNLADKAKKLGIPVWRYGGS 309


>ref|YP_002277134.1| hypothetical protein Gdia_2786 [Gluconacetobacter diazotrophicus
           PAl 5]
 gb|ACI52519.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 309

 Score =  233 bits (595), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 112/120 (93%), Positives = 116/120 (96%)

Query: 1   MPPGPKVALTGGLDFNDHRLIWAKLDQVHAKHADMVLLHGGSPKGAELIAAKWAGNRKVP 60
           +P GPKVALTGGLDFNDHRLIWAKLDQVH KH DMVLLHGGSPKGAELIAAKWA NRKVP
Sbjct: 190 LPAGPKVALTGGLDFNDHRLIWAKLDQVHTKHPDMVLLHGGSPKGAELIAAKWADNRKVP 249

Query: 61  QIAFKPDWTKHAKAAPFKRNDAMLETLPIGVIHFPGTGIQDNLADKAKKLGIPVWRFGGA 120
           QIAFKPDWTKHAKAAPFKRNDAM+ETLPIGV+HFPGTGIQDNLADKAKKLGIPVW+FGGA
Sbjct: 250 QIAFKPDWTKHAKAAPFKRNDAMVETLPIGVMHFPGTGIQDNLADKAKKLGIPVWKFGGA 309


>ref|ZP_07026242.1| Protein of unknown function DUF2493 [Afipia sp. 1NLS2]
 gb|EFI53384.1| Protein of unknown function DUF2493 [Afipia sp. 1NLS2]
          Length = 309

 Score =  230 bits (587), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 109/120 (90%), Positives = 115/120 (95%)

Query: 1   MPPGPKVALTGGLDFNDHRLIWAKLDQVHAKHADMVLLHGGSPKGAELIAAKWAGNRKVP 60
           +P GPKVALTGGLDFNDHRLIWAKLDQVH KH DMVLLHGGSPKGAELIAAKWA NRKVP
Sbjct: 190 LPAGPKVALTGGLDFNDHRLIWAKLDQVHVKHPDMVLLHGGSPKGAELIAAKWADNRKVP 249

Query: 61  QIAFKPDWTKHAKAAPFKRNDAMLETLPIGVIHFPGTGIQDNLADKAKKLGIPVWRFGGA 120
           QIAFKPDWTKHAKAAPF+RNDAML+ LPIG++HFPGTGIQDNLADKAKKLGIPVW+FGGA
Sbjct: 250 QIAFKPDWTKHAKAAPFRRNDAMLDVLPIGLLHFPGTGIQDNLADKAKKLGIPVWKFGGA 309


>ref|NP_768576.1| hypothetical protein blr1936 [Bradyrhizobium japonicum USDA 110]
 gb|AAG60915.1|AF322013_34 ID501 [Bradyrhizobium japonicum]
 dbj|BAC47201.1| blr1936 [Bradyrhizobium japonicum USDA 110]
          Length = 308

 Score =  228 bits (580), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 109/120 (90%), Positives = 115/120 (95%)

Query: 1   MPPGPKVALTGGLDFNDHRLIWAKLDQVHAKHADMVLLHGGSPKGAELIAAKWAGNRKVP 60
           MPPGPKVALTGGL+FND+RLIWAKLDQVHAKH DMVLLHGGS KGAELIAAKWA +RKVP
Sbjct: 189 MPPGPKVALTGGLEFNDYRLIWAKLDQVHAKHPDMVLLHGGSSKGAELIAAKWADSRKVP 248

Query: 61  QIAFKPDWTKHAKAAPFKRNDAMLETLPIGVIHFPGTGIQDNLADKAKKLGIPVWRFGGA 120
           QIAFKPDWTKHAK APF+RNDAMLETLPIGV+HFPGTGIQDNLADKAKKLGIPVW+FG A
Sbjct: 249 QIAFKPDWTKHAKPAPFRRNDAMLETLPIGVMHFPGTGIQDNLADKAKKLGIPVWKFGDA 308