BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0002.p         (134 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774939.1| hypothetical protein blr8299 [Bradyrhizobium ja...   242   1e-62
gb|AAG60913.1|AF322013_32 ID496 [Bradyrhizobium japonicum]            224   4e-57
ref|NP_768574.1| hypothetical protein blr1934 [Bradyrhizobium ja...   224   5e-57
ref|ZP_07026244.1| putative methylase/helicase [Afipia sp. 1NLS2...   223   6e-57
ref|YP_002277132.1| putative methylase/helicase [Gluconacetobact...   221   2e-56

>ref|NP_774939.1| hypothetical protein blr8299 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53564.1| blr8299 [Bradyrhizobium japonicum USDA 110]
          Length = 744

 Score =  242 bits (618), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/134 (88%), Positives = 123/134 (91%)

Query: 1   LPNESTRVHRLQTDEGERIIGRRVPPAWAANACATGASNLTPHEAFSALMEGRTVLDLAE 60
           LPNESTRV+RLQTD GERIIGRRV PAWAA+AC T   +LTP+EAFSALMEGRTVL+LAE
Sbjct: 611 LPNESTRVYRLQTDAGERIIGRRVSPAWAASACMTATCSLTPNEAFSALMEGRTVLELAE 670

Query: 61  DLQLRRVRVMSVHRIELSGFTDAMRDRLRAYGLFSEIISWKLRMFVPSDATGVAVLAKVL 120
           DLQLRRVRVM  HR ELSGFTD MRDRLRAYGLFSEIISWKLRMFVPSDATG AVLAKVL
Sbjct: 671 DLQLRRVRVMGAHRFELSGFTDVMRDRLRAYGLFSEIISWKLRMFVPSDATGAAVLAKVL 730

Query: 121 DHYPIVRIGEREAA 134
           DHYPIVRIGEREAA
Sbjct: 731 DHYPIVRIGEREAA 744


>gb|AAG60913.1|AF322013_32 ID496 [Bradyrhizobium japonicum]
          Length = 842

 Score =  224 bits (570), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 121/134 (90%), Positives = 125/134 (93%)

Query: 1   LPNESTRVHRLQTDEGERIIGRRVPPAWAANACATGASNLTPHEAFSALMEGRTVLDLAE 60
           LPNESTRV+RLQTDEGERIIGRRV PAWAANACAT   +LTP EAF+ALMEGRTVLDLAE
Sbjct: 709 LPNESTRVYRLQTDEGERIIGRRVSPAWAANACATATCSLTPPEAFAALMEGRTVLDLAE 768

Query: 61  DLQLRRVRVMSVHRIELSGFTDAMRDRLRAYGLFSEIISWKLRMFVPSDATGVAVLAKVL 120
           DLQLRRVRVM VHRIELSGFTDAMRDRLRAYGLFSEIISWKLRMFVPSDATG A LAKVL
Sbjct: 769 DLQLRRVRVMGVHRIELSGFTDAMRDRLRAYGLFSEIISWKLRMFVPSDATGAAALAKVL 828

Query: 121 DHYPIVRIGEREAA 134
           DHY +VRIGEREAA
Sbjct: 829 DHYQVVRIGEREAA 842


>ref|NP_768574.1| hypothetical protein blr1934 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47199.1| blr1934 [Bradyrhizobium japonicum USDA 110]
          Length = 744

 Score =  224 bits (570), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 121/134 (90%), Positives = 125/134 (93%)

Query: 1   LPNESTRVHRLQTDEGERIIGRRVPPAWAANACATGASNLTPHEAFSALMEGRTVLDLAE 60
           LPNESTRV+RLQTDEGERIIGRRV PAWAANACAT   +LTP EAF+ALMEGRTVLDLAE
Sbjct: 611 LPNESTRVYRLQTDEGERIIGRRVSPAWAANACATATCSLTPPEAFAALMEGRTVLDLAE 670

Query: 61  DLQLRRVRVMSVHRIELSGFTDAMRDRLRAYGLFSEIISWKLRMFVPSDATGVAVLAKVL 120
           DLQLRRVRVM VHRIELSGFTDAMRDRLRAYGLFSEIISWKLRMFVPSDATG A LAKVL
Sbjct: 671 DLQLRRVRVMGVHRIELSGFTDAMRDRLRAYGLFSEIISWKLRMFVPSDATGAAALAKVL 730

Query: 121 DHYPIVRIGEREAA 134
           DHY +VRIGEREAA
Sbjct: 731 DHYQVVRIGEREAA 744


>ref|ZP_07026244.1| putative methylase/helicase [Afipia sp. 1NLS2]
 gb|EFI53386.1| putative methylase/helicase [Afipia sp. 1NLS2]
          Length = 1444

 Score =  223 bits (569), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 110/134 (82%), Positives = 115/134 (85%)

Query: 1    LPNESTRVHRLQTDEGERIIGRRVPPAWAANACATGASNLTPHEAFSALMEGRTVLDLAE 60
            LPNESTRV+RLQTD GERIIGRRV PAWAANA  TG + LTP  AF+AL EGRTVLDLAE
Sbjct: 1311 LPNESTRVYRLQTDAGERIIGRRVSPAWAANASVTGTTILTPDAAFAALTEGRTVLDLAE 1370

Query: 61   DLQLRRVRVMSVHRIELSGFTDAMRDRLRAYGLFSEIISWKLRMFVPSDATGVAVLAKVL 120
             LQL R RVM VHRIELSGFTD MRDRLRAYGLFSEIISWKLRMFVP+DA G  VLAKVL
Sbjct: 1371 GLQLHRARVMGVHRIELSGFTDTMRDRLRAYGLFSEIISWKLRMFVPTDAAGAGVLAKVL 1430

Query: 121  DHYPIVRIGEREAA 134
            DHYP +RI EREAA
Sbjct: 1431 DHYPALRISEREAA 1444


>ref|YP_002277132.1| putative methylase/helicase [Gluconacetobacter diazotrophicus PAl 5]
 gb|ACI52517.1| putative methylase/helicase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 1440

 Score =  221 bits (564), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/134 (79%), Positives = 117/134 (87%)

Query: 1    LPNESTRVHRLQTDEGERIIGRRVPPAWAANACATGASNLTPHEAFSALMEGRTVLDLAE 60
            LPNESTRV+RLQTD GERIIGRRV PAWAANA  +G + L P  AF+AL+EGRT+LDLAE
Sbjct: 1307 LPNESTRVYRLQTDGGERIIGRRVSPAWAANASMSGTATLPPEAAFAALLEGRTILDLAE 1366

Query: 61   DLQLRRVRVMSVHRIELSGFTDAMRDRLRAYGLFSEIISWKLRMFVPSDATGVAVLAKVL 120
             LQLRRVRVM  HRIELSGFTD MR+RLRAYGLFSEIISWKLRMFVP DA+G AVLAK+L
Sbjct: 1367 GLQLRRVRVMGAHRIELSGFTDTMRERLRAYGLFSEIISWKLRMFVPIDASGAAVLAKLL 1426

Query: 121  DHYPIVRIGEREAA 134
            DHYP+ R GEREAA
Sbjct: 1427 DHYPVERTGEREAA 1440