BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0001.p         (319 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_768574.1| hypothetical protein blr1934 [Bradyrhizobium ja...   531   e-149
ref|NP_774939.1| hypothetical protein blr8299 [Bradyrhizobium ja...   531   e-149
gb|AAG60913.1|AF322013_32 ID496 [Bradyrhizobium japonicum]            531   e-149
ref|YP_002277132.1| putative methylase/helicase [Gluconacetobact...   514   e-144
ref|ZP_07026244.1| putative methylase/helicase [Afipia sp. 1NLS2...   510   e-142

>ref|NP_768574.1| hypothetical protein blr1934 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47199.1| blr1934 [Bradyrhizobium japonicum USDA 110]
          Length = 744

 Score =  531 bits (1369), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/272 (95%), Positives = 264/272 (97%)

Query: 1   LLEPGWKADAAIQGLGRTNRTNQAQPPLFRPIATDVKAEKRFLSTIARRLDTLGAITRGQ 60
           LLEPGWKADAAIQGLG TNRTNQAQPPLFRPIATDVKAEKRFLSTIARRLDTLGAITRGQ
Sbjct: 297 LLEPGWKADAAIQGLGHTNRTNQAQPPLFRPIATDVKAEKRFLSTIARRLDTLGAITRGQ 356

Query: 61  RQTGGQGLFRPEDNLESHYARDALRQLYLLLVRGKVEGCSLQTFEDATGLKLMDANGIKD 120
           RQTGGQGLFRPEDNLESHYARDALRQLYLLLVRGKVEGCSLQTFEDATGLKLMDANGIKD
Sbjct: 357 RQTGGQGLFRPEDNLESHYARDALRQLYLLLVRGKVEGCSLQTFEDATGLKLMDANGIKD 416

Query: 121 ELPPITTFLNRLLALTIDLQGLLFTAFEQLLNAKVEGAIARGVYDVGLETLQAESFVVTD 180
           ELPPITTFLNRLLALTIDLQG+LFTAFE+LLNAKVEGAIA GVYDVGLETLQAESF++TD
Sbjct: 417 ELPPITTFLNRLLALTIDLQGVLFTAFEELLNAKVEGAIASGVYDVGLETLQAESFIITD 476

Query: 181 RHPIYTHPATGAETRLLTITERRRNRPMTLDQALDYLADARAVLLVNERSGRAAVQIPAP 240
           R PIYTHP TGAETRLLTI ERRRNRPMTLDQA DYLADARAVLLVNERSGRAAVQIPAP
Sbjct: 477 RRPIYTHPPTGAETRLLTIIERRRNRPMTLDQAFDYLADARAVLLVNERSGRAAVQIPAP 536

Query: 241 SFMLDDGEIERRVRLIRPMEHHHASIKMMDES 272
           S MLDDGEIE RVRLIRPMEHHHAS+KMMDES
Sbjct: 537 SLMLDDGEIESRVRLIRPMEHHHASMKMMDES 568


>ref|NP_774939.1| hypothetical protein blr8299 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53564.1| blr8299 [Bradyrhizobium japonicum USDA 110]
          Length = 744

 Score =  531 bits (1369), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 260/272 (95%), Positives = 265/272 (97%)

Query: 1   LLEPGWKADAAIQGLGRTNRTNQAQPPLFRPIATDVKAEKRFLSTIARRLDTLGAITRGQ 60
           LLEPGWKADAAIQGLGRTNRTNQAQPPLFRPIATDVKAEKRFLSTIARRLDTLGAITRGQ
Sbjct: 297 LLEPGWKADAAIQGLGRTNRTNQAQPPLFRPIATDVKAEKRFLSTIARRLDTLGAITRGQ 356

Query: 61  RQTGGQGLFRPEDNLESHYARDALRQLYLLLVRGKVEGCSLQTFEDATGLKLMDANGIKD 120
           RQTGGQGLFRPEDNLESHYARDALRQLYLLLVRGKVEGCSL+ FEDATGLKL+D NGIKD
Sbjct: 357 RQTGGQGLFRPEDNLESHYARDALRQLYLLLVRGKVEGCSLEMFEDATGLKLVDENGIKD 416

Query: 121 ELPPITTFLNRLLALTIDLQGLLFTAFEQLLNAKVEGAIARGVYDVGLETLQAESFVVTD 180
           ELPPITTFLNRLLALTI LQ LLFTAFEQLLNAKVEGAIA GVYD+GLETLQA+SFVVT 
Sbjct: 417 ELPPITTFLNRLLALTIGLQALLFTAFEQLLNAKVEGAIASGVYDIGLETLQADSFVVTG 476

Query: 181 RHPIYTHPATGAETRLLTITERRRNRPMTLDQALDYLADARAVLLVNERSGRAAVQIPAP 240
           RHPIYTHPATGAETRLLTITERRRNRPMTLDQALDYLADARAVLLVNERSGRAAVQIPAP
Sbjct: 477 RHPIYTHPATGAETRLLTITERRRNRPMTLDQALDYLADARAVLLVNERSGRAAVQIPAP 536

Query: 241 SFMLDDGEIERRVRLIRPMEHHHASIKMMDES 272
           SFMLDDGEIE RVRLIRPMEHHHAS+KMMDES
Sbjct: 537 SFMLDDGEIESRVRLIRPMEHHHASMKMMDES 568


>gb|AAG60913.1|AF322013_32 ID496 [Bradyrhizobium japonicum]
          Length = 842

 Score =  531 bits (1368), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/272 (95%), Positives = 264/272 (97%)

Query: 1   LLEPGWKADAAIQGLGRTNRTNQAQPPLFRPIATDVKAEKRFLSTIARRLDTLGAITRGQ 60
           LLEPGWKADAAIQGLG TNRTNQAQPPLFRPIATDVKAEKRFLSTIARRLDTLGAITRGQ
Sbjct: 395 LLEPGWKADAAIQGLGHTNRTNQAQPPLFRPIATDVKAEKRFLSTIARRLDTLGAITRGQ 454

Query: 61  RQTGGQGLFRPEDNLESHYARDALRQLYLLLVRGKVEGCSLQTFEDATGLKLMDANGIKD 120
           RQTGGQGLFRPEDNLESHYARDALRQLYLLLVRGKVEGCSLQTFEDATGLKLMDANGIKD
Sbjct: 455 RQTGGQGLFRPEDNLESHYARDALRQLYLLLVRGKVEGCSLQTFEDATGLKLMDANGIKD 514

Query: 121 ELPPITTFLNRLLALTIDLQGLLFTAFEQLLNAKVEGAIARGVYDVGLETLQAESFVVTD 180
           ELPPITTFLNRLLALTIDLQG+LFTAFE+LLNAKVEGAIA GVYDVGLETLQAESF++TD
Sbjct: 515 ELPPITTFLNRLLALTIDLQGVLFTAFEELLNAKVEGAIASGVYDVGLETLQAESFIITD 574

Query: 181 RHPIYTHPATGAETRLLTITERRRNRPMTLDQALDYLADARAVLLVNERSGRAAVQIPAP 240
           R PIYTHP TGAETRLLTI ERRRNRPMTLDQA DYLADARAVLLVNERSGRAAVQIPAP
Sbjct: 575 RRPIYTHPPTGAETRLLTIIERRRNRPMTLDQAFDYLADARAVLLVNERSGRAAVQIPAP 634

Query: 241 SFMLDDGEIERRVRLIRPMEHHHASIKMMDES 272
           S MLDDGEIE RVRLIRPMEHHHAS+KMMDES
Sbjct: 635 SLMLDDGEIESRVRLIRPMEHHHASMKMMDES 666


>ref|YP_002277132.1| putative methylase/helicase [Gluconacetobacter diazotrophicus PAl 5]
 gb|ACI52517.1| putative methylase/helicase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 1440

 Score =  514 bits (1323), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 253/272 (93%), Positives = 261/272 (95%)

Query: 1    LLEPGWKADAAIQGLGRTNRTNQAQPPLFRPIATDVKAEKRFLSTIARRLDTLGAITRGQ 60
            LLEPGWKADAAIQGLGRTNRTNQAQPPLFRPIATDVKAEKRFLSTIARRLDTLGAITRGQ
Sbjct: 993  LLEPGWKADAAIQGLGRTNRTNQAQPPLFRPIATDVKAEKRFLSTIARRLDTLGAITRGQ 1052

Query: 61   RQTGGQGLFRPEDNLESHYARDALRQLYLLLVRGKVEGCSLQTFEDATGLKLMDANGIKD 120
            RQTGGQGLFRPEDNLES YARDALRQLYLLLVRGKVEGCSL+ FED TGLKL D NGIKD
Sbjct: 1053 RQTGGQGLFRPEDNLESPYARDALRQLYLLLVRGKVEGCSLRMFEDITGLKLTDDNGIKD 1112

Query: 121  ELPPITTFLNRLLALTIDLQGLLFTAFEQLLNAKVEGAIARGVYDVGLETLQAESFVVTD 180
            ELPPITTFLNRLLALTID+QG+LFTAFEQLL AKVEGAIA GVYD+GLETLQAESFVVTD
Sbjct: 1113 ELPPITTFLNRLLALTIDMQGVLFTAFEQLLTAKVEGAIASGVYDIGLETLQAESFVVTD 1172

Query: 181  RHPIYTHPATGAETRLLTITERRRNRPMTLDQALDYLADARAVLLVNERSGRAAVQIPAP 240
            R  IYTHPATGAETRLLTITERRRNRP+TLDQALD+LAD RAVLLVNERSGRAAVQ+PAP
Sbjct: 1173 RRTIYTHPATGAETRLLTITERRRNRPVTLDQALDHLADPRAVLLVNERSGRAAVQVPAP 1232

Query: 241  SFMLDDGEIERRVRLIRPMEHHHASIKMMDES 272
            S MLDDGEIERRVRLIRPMEHHHAS+KMMDES
Sbjct: 1233 SLMLDDGEIERRVRLIRPMEHHHASLKMMDES 1264


>ref|ZP_07026244.1| putative methylase/helicase [Afipia sp. 1NLS2]
 gb|EFI53386.1| putative methylase/helicase [Afipia sp. 1NLS2]
          Length = 1444

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/272 (91%), Positives = 261/272 (95%)

Query: 1    LLEPGWKADAAIQGLGRTNRTNQAQPPLFRPIATDVKAEKRFLSTIARRLDTLGAITRGQ 60
            LLEPGWKADAAIQGLGRTNRTNQAQPPLFRPIATDVKAEKRFLSTIARRLDTLGAITRGQ
Sbjct: 997  LLEPGWKADAAIQGLGRTNRTNQAQPPLFRPIATDVKAEKRFLSTIARRLDTLGAITRGQ 1056

Query: 61   RQTGGQGLFRPEDNLESHYARDALRQLYLLLVRGKVEGCSLQTFEDATGLKLMDANGIKD 120
            RQTGGQGLFRPEDNLESHYARDALRQLY+LLVRGK+EGCSLQ FE ATGL LMDANGIKD
Sbjct: 1057 RQTGGQGLFRPEDNLESHYARDALRQLYMLLVRGKIEGCSLQMFEAATGLNLMDANGIKD 1116

Query: 121  ELPPITTFLNRLLALTIDLQGLLFTAFEQLLNAKVEGAIARGVYDVGLETLQAESFVVTD 180
            ELPPITTFLNRLLALTI+LQG+LFTAFEQLLNAK+EGAIA GVYDVGLETL+AESFVV D
Sbjct: 1117 ELPPITTFLNRLLALTIELQGVLFTAFEQLLNAKIEGAIASGVYDVGLETLRAESFVVID 1176

Query: 181  RHPIYTHPATGAETRLLTITERRRNRPMTLDQALDYLADARAVLLVNERSGRAAVQIPAP 240
            R  IYTHPAT AETRLLTITERRRNRP+TLD+ALD+LAD RA LL+NERSGRAAVQIPAP
Sbjct: 1177 RRTIYTHPATTAETRLLTITERRRNRPVTLDEALDHLADHRAALLLNERSGRAAVQIPAP 1236

Query: 241  SFMLDDGEIERRVRLIRPMEHHHASIKMMDES 272
            S MLDDGEIERRVRLIRPMEHHHAS+KMMD+S
Sbjct: 1237 SLMLDDGEIERRVRLIRPMEHHHASLKMMDDS 1268