BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0043.p (239 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771278.1| hypothetical protein blr4638 [Bradyrhizobium ja... 335 2e-90 ref|YP_001241616.1| hypothetical protein BBta_5760 [Bradyrhizobi... 309 2e-82 ref|YP_001207210.1| hypothetical protein BRADO5312 [Bradyrhizobi... 305 4e-81 ref|YP_577180.1| signal-transduction protein [Nitrobacter hambur... 301 4e-80 ref|NP_772714.1| hypothetical protein blr6074 [Bradyrhizobium ja... 298 3e-79 >ref|NP_771278.1| hypothetical protein blr4638 [Bradyrhizobium japonicum USDA 110] dbj|BAC49903.1| blr4638 [Bradyrhizobium japonicum USDA 110] Length = 240 Score = 335 bits (860), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 164/239 (68%), Positives = 194/239 (81%), Gaps = 1/239 (0%) Query: 1 MRAHQIMTNNVITVTPRTSIEEAANIMLRNHISGLPVVDD-GKLTGIVSESDFLRRGEIG 59 M A +MT +V+ VTP T+IEEAA IMLR HISGLPV+DD G L GIVSESDFLRR EIG Sbjct: 1 MHALHVMTRDVVAVTPHTTIEEAAKIMLRMHISGLPVIDDAGNLVGIVSESDFLRRSEIG 60 Query: 60 TGRKRSAILQFLFGLGRAADDFVHERGRKIEDVMTLDPVTVEEQTPLDELVHLMEKSDVK 119 TGRK +A L+F G RAA +FVHE GRK+EDVMT V+ E+T L ++V LMEK D+K Sbjct: 61 TGRKHAAWLKFFMGPRRAAAEFVHESGRKVEDVMTRQVVSAREETSLVDVVDLMEKHDIK 120 Query: 120 RLPVMRGKDLVGIVTRSNLLQAVASLEHEIPDPTADDDHIRNRILRQIDAVSWRPIGFEV 179 R+PVMRG+ +GIVTRSNLLQA+ASL HEIPDPTADD+HIR RI R ++A WRPIG V Sbjct: 121 RVPVMRGEATIGIVTRSNLLQAMASLAHEIPDPTADDEHIRERITRAVNAADWRPIGSRV 180 Query: 180 TVRSGVVHMHGIVTSDHAREATIVAAENTAGVKKVHDHLCFVDTYTGFYVESPEDMKAA 238 VR GVVH+HG++T D AR ATIVAAENT+GVK+VHDHLC VD+YTG+YVESPED++AA Sbjct: 181 DVRKGVVHLHGLITIDQARRATIVAAENTSGVKEVHDHLCLVDSYTGYYVESPEDLRAA 239 >ref|YP_001241616.1| hypothetical protein BBta_5760 [Bradyrhizobium sp. BTAi1] gb|ABQ37710.1| hypothetical protein BBta_5760 [Bradyrhizobium sp. BTAi1] Length = 242 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 147/239 (61%), Positives = 186/239 (77%), Gaps = 1/239 (0%) Query: 1 MRAHQIMTNNVITVTPRTSIEEAANIMLRNHISGLPVVD-DGKLTGIVSESDFLRRGEIG 59 MRAHQIMT VITVTP TSI EAANIML+ H+SGLPVVD GKL G+VSE DF+RR EIG Sbjct: 1 MRAHQIMTRPVITVTPDTSIVEAANIMLQRHVSGLPVVDASGKLIGVVSEGDFIRRTEIG 60 Query: 60 TGRKRSAILQFLFGLGRAADDFVHERGRKIEDVMTLDPVTVEEQTPLDELVHLMEKSDVK 119 TGRKR L+F+ G G++A DFVHE GRK+ +VMT P+T+ E L E+V +MEK+ VK Sbjct: 61 TGRKRGRWLRFILGPGKSAADFVHEHGRKVSEVMTKSPLTITEDAALAEIVEIMEKNHVK 120 Query: 120 RLPVMRGKDLVGIVTRSNLLQAVASLEHEIPDPTADDDHIRNRILRQIDAVSWRPIGFEV 179 RLPV++G +VGIV+R+NLLQAVA+L ++PDPTADDDHIRNR++ ++ W P G V Sbjct: 121 RLPVVKGDQVVGIVSRANLLQAVATLGRQVPDPTADDDHIRNRVIDNLEKNDWCPFGLSV 180 Query: 180 TVRSGVVHMHGIVTSDHAREATIVAAENTAGVKKVHDHLCFVDTYTGFYVESPEDMKAA 238 V+ G+VH+ G++T + +R+A IVA EN AGVKKVHDHLC+VDT +G Y+ SPED + A Sbjct: 181 IVKDGIVHLSGVITEERSRQAAIVATENVAGVKKVHDHLCWVDTMSGMYLNSPEDEEMA 239 >ref|YP_001207210.1| hypothetical protein BRADO5312 [Bradyrhizobium sp. ORS 278] emb|CAL78993.1| conserved hypothetical protein with CBS domain [Bradyrhizobium sp. ORS 278] Length = 242 Score = 305 bits (781), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 144/235 (61%), Positives = 185/235 (78%), Gaps = 1/235 (0%) Query: 1 MRAHQIMTNNVITVTPRTSIEEAANIMLRNHISGLPVVD-DGKLTGIVSESDFLRRGEIG 59 MRAHQIMT VITVTP TSI +AANIML+ H+SGLPVVD GKL G+VSE DF+RR EIG Sbjct: 1 MRAHQIMTRPVITVTPDTSIVDAANIMLQRHVSGLPVVDASGKLVGVVSEGDFIRRTEIG 60 Query: 60 TGRKRSAILQFLFGLGRAADDFVHERGRKIEDVMTLDPVTVEEQTPLDELVHLMEKSDVK 119 TGRKR L+F+ G G++A DFVHE GRK+ +VMT P+T+ E L E+V +MEK+ VK Sbjct: 61 TGRKRGRWLRFILGPGKSAADFVHEHGRKVSEVMTRSPLTITEDAALAEIVEIMEKNHVK 120 Query: 120 RLPVMRGKDLVGIVTRSNLLQAVASLEHEIPDPTADDDHIRNRILRQIDAVSWRPIGFEV 179 RLPV++G +VGIV+R+NLLQAVASL ++PDPTADDDHIR+R++ ++ W P G V Sbjct: 121 RLPVVKGDQVVGIVSRANLLQAVASLGRQVPDPTADDDHIRDRVIDMMEKNDWCPFGLSV 180 Query: 180 TVRSGVVHMHGIVTSDHAREATIVAAENTAGVKKVHDHLCFVDTYTGFYVESPED 234 V+ G+VH+ G++T + +R+A +VAAEN AGV+KVHDHLC+VDT +G Y+ SPED Sbjct: 181 IVKDGIVHLSGVITEERSRQAAVVAAENIAGVRKVHDHLCWVDTMSGMYLNSPED 235 >ref|YP_577180.1| signal-transduction protein [Nitrobacter hamburgensis X14] gb|ABE62720.1| putative signal-transduction protein with CBS domains [Nitrobacter hamburgensis X14] Length = 242 Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 144/240 (60%), Positives = 182/240 (75%), Gaps = 1/240 (0%) Query: 1 MRAHQIMTNNVITVTPRTSIEEAANIMLRNHISGLPVVDD-GKLTGIVSESDFLRRGEIG 59 MRAHQIMT V TV P T+I +AAN ML+ HISGLPV++ GKL GI+SE DF+RR EIG Sbjct: 1 MRAHQIMTRQVTTVNPDTTIVDAANTMLKQHISGLPVINAAGKLVGIISEGDFIRRAEIG 60 Query: 60 TGRKRSAILQFLFGLGRAADDFVHERGRKIEDVMTLDPVTVEEQTPLDELVHLMEKSDVK 119 T R+R+ L+FL G GR A DFVHE+GRK+ ++MT +P TV E T L+++V MEK+ +K Sbjct: 61 TQRRRARWLKFLLGAGRDASDFVHEQGRKVGEIMTPNPCTVSEDTLLEDIVTTMEKNSIK 120 Query: 120 RLPVMRGKDLVGIVTRSNLLQAVASLEHEIPDPTADDDHIRNRILRQIDAVSWRPIGFEV 179 RLPVMRG +VGIVTR+NLLQAVA L E+PDPTADDDHIR+RI+ I+ W P G V Sbjct: 121 RLPVMRGDQIVGIVTRANLLQAVAGLAREVPDPTADDDHIRDRIITSIEKSDWCPYGLGV 180 Query: 180 TVRSGVVHMHGIVTSDHAREATIVAAENTAGVKKVHDHLCFVDTYTGFYVESPEDMKAAS 239 V G+VH+ G++T + AR+A +V AEN AGVK VHDHLC+VDT +G Y+ SPED + A+ Sbjct: 181 IVHGGIVHLSGVITDERARQAAVVTAENAAGVKNVHDHLCWVDTMSGLYLISPEDDQLAA 240 >ref|NP_772714.1| hypothetical protein blr6074 [Bradyrhizobium japonicum USDA 110] dbj|BAC51339.1| blr6074 [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 151/235 (64%), Positives = 186/235 (79%), Gaps = 1/235 (0%) Query: 1 MRAHQIMTNNVITVTPRTSIEEAANIMLRNHISGLPVVDD-GKLTGIVSESDFLRRGEIG 59 MRAHQIMT +VI+VTP TSI EAANIML+ H+SGL VVDD GKL G+VSE DF+RR EIG Sbjct: 1 MRAHQIMTRSVISVTPDTSIVEAANIMLKRHVSGLTVVDDTGKLVGVVSEGDFIRRSEIG 60 Query: 60 TGRKRSAILQFLFGLGRAADDFVHERGRKIEDVMTLDPVTVEEQTPLDELVHLMEKSDVK 119 TGRKR L+F+ G G++A DFVHE GRK+ +VMT PVT+ E T L E+V LME+++VK Sbjct: 61 TGRKRGRWLRFILGPGKSASDFVHEHGRKVSEVMTASPVTITEDTALAEIVDLMERNNVK 120 Query: 120 RLPVMRGKDLVGIVTRSNLLQAVASLEHEIPDPTADDDHIRNRILRQIDAVSWRPIGFEV 179 RLPV+RG +VGIV+R+NLLQAVA L E+PDPTADDDHIRNRI+ ++ W P G V Sbjct: 121 RLPVVRGDMVVGIVSRANLLQAVAGLAREVPDPTADDDHIRNRIIDTMERNDWCPFGLNV 180 Query: 180 TVRSGVVHMHGIVTSDHAREATIVAAENTAGVKKVHDHLCFVDTYTGFYVESPED 234 VR G+VH+ G++T + AR+A +VAAEN GVKKVHDHLC+VDT +G Y+ SPED Sbjct: 181 IVRDGIVHLSGVITEERARQAAVVAAENVEGVKKVHDHLCWVDTMSGVYLNSPED 235