BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0041.p         (75 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAZ87258.1| putative mRNA cleavage and polyadenylation speci...    83   2e-14
ref|YP_003642178.1| RNA-metabolising metallo-beta-lactamase [Thi...    83   2e-14
ref|YP_003643153.1| RNA-metabolising metallo-beta-lactamase [Thi...    82   2e-14
emb|CAZ88504.1| putative mRNA Cleavage and polyadenylation speci...    81   5e-14
ref|YP_393780.1| RNA-metabolising metallo-beta-lactamase [Sulfur...    78   6e-13

>emb|CAZ87258.1| putative mRNA cleavage and polyadenylation specificity factor
           [Thiomonas sp. 3As]
          Length = 460

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 1   VRLFGEDIAVRSTIYTINGFSAHVDQQELLAWRRTIEGCEATFLVHGEEPAMLAPAAHLE 60
           V+LFGE+I V + +YTINGFSAH DQ+ELLAW++ ++  E T LVHG+  +M A AA L+
Sbjct: 387 VKLFGEEIPVHARLYTINGFSAHADQRELLAWQQALK-PEQTILVHGDPDSMDAFAALLK 445

Query: 61  GQRVELPRPGDVFDL 75
             RV+ P+ GDV DL
Sbjct: 446 NTRVQRPKQGDVIDL 460


>ref|YP_003642178.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12]
 gb|ADG29848.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12]
          Length = 460

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 1   VRLFGEDIAVRSTIYTINGFSAHVDQQELLAWRRTIEGCEATFLVHGEEPAMLAPAAHLE 60
           V+LFGE+I V + +YTINGFSAH DQ+ELLAW++ ++  E T LVHG+  +M A AA L+
Sbjct: 387 VKLFGEEIPVHARLYTINGFSAHADQRELLAWQQALK-PEQTILVHGDPHSMDAFAALLK 445

Query: 61  GQRVELPRPGDVFDL 75
             RV+ P+ GDV DL
Sbjct: 446 NTRVQRPKQGDVIDL 460


>ref|YP_003643153.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12]
 gb|ADG30823.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12]
          Length = 460

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 1   VRLFGEDIAVRSTIYTINGFSAHVDQQELLAWRRTIEGCEATFLVHGEEPAMLAPAAHLE 60
           V+LFGE+I V + +YTINGFSAH DQ+ELLAW++ ++  E T LVHG+  +M A AA L+
Sbjct: 387 VKLFGEEIPVHARLYTINGFSAHADQRELLAWQQALK-PEQTILVHGDPHSMDAFAALLK 445

Query: 61  GQRVELPRPGDVFDL 75
             RV+ P+ GDV DL
Sbjct: 446 NTRVQRPKQGDVIDL 460


>emb|CAZ88504.1| putative mRNA Cleavage and polyadenylation specificity factor
           [Thiomonas sp. 3As]
          Length = 460

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 55/75 (73%), Gaps = 1/75 (1%)

Query: 1   VRLFGEDIAVRSTIYTINGFSAHVDQQELLAWRRTIEGCEATFLVHGEEPAMLAPAAHLE 60
           V+LFGE+I V + +YTINGFSAH DQ+ELLAW++ ++  E T LVHG+  +M   AA L+
Sbjct: 387 VKLFGEEIPVHARLYTINGFSAHADQRELLAWQQALK-PEQTILVHGDPDSMDVFAALLK 445

Query: 61  GQRVELPRPGDVFDL 75
             RV+ P+ GDV DL
Sbjct: 446 NTRVQRPKQGDVIDL 460


>ref|YP_393780.1| RNA-metabolising metallo-beta-lactamase [Sulfurimonas denitrificans
           DSM 1251]
 gb|ABB44545.1| RNA-metabolising metallo-beta-lactamase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 465

 Score = 77.8 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 42/52 (80%)

Query: 1   VRLFGEDIAVRSTIYTINGFSAHVDQQELLAWRRTIEGCEATFLVHGEEPAM 52
           V+++GE+IA+R+ IYTINGFSAH DQ+EL+ W R IEG +  FL+HGEE  M
Sbjct: 388 VKIYGEEIAIRAKIYTINGFSAHADQKELIDWVRPIEGLKNIFLIHGEEDKM 439