BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0014.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001239435.1| putative UspA stress protein [Bradyrhizobium...   199   1e-49
ref|YP_002289774.1| UspA [Oligotropha carboxidovorans OM5] >gi|3...   161   3e-38
ref|ZP_01045924.1| Universal stress protein, UspA [Nitrobacter s...   160   6e-38
ref|YP_577212.1| hypothetical protein Nham_1948 [Nitrobacter ham...   158   3e-37
ref|YP_317638.1| universal stress protein UspA [Nitrobacter wino...   155   2e-36

>ref|YP_001239435.1| putative UspA stress protein [Bradyrhizobium sp. BTAi1]
 gb|ABQ35529.1| putative UspA stress protein [Bradyrhizobium sp. BTAi1]
          Length = 278

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/119 (82%), Positives = 105/119 (88%)

Query: 1   VAWDFSRAAARAVSDAIPILEKAREVYICTVTSEKTIPSRRSSSELAKNLSRHGIDVIVE 60
           VAWDFSR AARAVSDA+PILEKAREV I T+T EK I SRRS SELAKNLSRHGI+VIV+
Sbjct: 160 VAWDFSRGAARAVSDAVPILEKAREVCILTITKEKAISSRRSPSELAKNLSRHGINVIVD 219

Query: 61  EVDAAGRAIGDVLATQIESRRCNLLVMGGYGHSRLREFVLGGATRSILANPPIPVLFSH 119
           EVDAAGR IGDVLA QIESRR ++LVMG YGHSR REF+LGGATRSIL  PPIPVLFSH
Sbjct: 220 EVDAAGRGIGDVLAAQIESRRPDILVMGAYGHSRFREFILGGATRSILTKPPIPVLFSH 278


>ref|YP_002289774.1| UspA [Oligotropha carboxidovorans OM5]
 ref|YP_004632235.1| universal stress protein family protein [Oligotropha
           carboxidovorans OM5]
 gb|ACI93909.1| UspA [Oligotropha carboxidovorans OM5]
 gb|AEI02418.1| universal stress protein family protein [Oligotropha
           carboxidovorans OM4]
 gb|AEI05994.1| universal stress protein family protein [Oligotropha
           carboxidovorans OM5]
          Length = 282

 Score =  161 bits (408), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 72/119 (60%), Positives = 95/119 (79%)

Query: 1   VAWDFSRAAARAVSDAIPILEKAREVYICTVTSEKTIPSRRSSSELAKNLSRHGIDVIVE 60
           VAWDFSR AARAV+DA+PILEKA++V+I TVT EK I SRRS+ ELAKNL  H + V ++
Sbjct: 164 VAWDFSRPAARAVTDALPILEKAKQVHIVTVTHEKNISSRRSADELAKNLLSHDVQVTLD 223

Query: 61  EVDAAGRAIGDVLATQIESRRCNLLVMGGYGHSRLREFVLGGATRSILANPPIPVLFSH 119
            VDA GR IG+ L + ++S   ++LVMG YGHSRLR+F+LGGAT+S+++ PP+P+  SH
Sbjct: 224 TVDAGGRGIGETLTSYVDSVNADILVMGAYGHSRLRDFILGGATKSMVSKPPVPIFLSH 282


>ref|ZP_01045924.1| Universal stress protein, UspA [Nitrobacter sp. Nb-311A]
 gb|EAQ36008.1| Universal stress protein, UspA [Nitrobacter sp. Nb-311A]
          Length = 279

 Score =  160 bits (405), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 78/119 (65%), Positives = 93/119 (78%)

Query: 1   VAWDFSRAAARAVSDAIPILEKAREVYICTVTSEKTIPSRRSSSELAKNLSRHGIDVIVE 60
           VAWDFSR AARAVSDA+P+LEKA++V    VT+EK+  S+ S  EL KNL+RHGIDVIV+
Sbjct: 161 VAWDFSRTAARAVSDALPLLEKAKKVRAVVVTNEKSFDSQHSPEELTKNLARHGIDVIVD 220

Query: 61  EVDAAGRAIGDVLATQIESRRCNLLVMGGYGHSRLREFVLGGATRSILANPPIPVLFSH 119
           EVD+ GR IG+VL   + S   +LLVMG YG SR RE VLGGATRS+L+ PPIPV FSH
Sbjct: 221 EVDSEGRPIGEVLEAYVLSHGIDLLVMGAYGQSRWREVVLGGATRSLLSKPPIPVFFSH 279


>ref|YP_577212.1| hypothetical protein Nham_1948 [Nitrobacter hamburgensis X14]
 gb|ABE62752.1| UspA [Nitrobacter hamburgensis X14]
          Length = 279

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/119 (61%), Positives = 97/119 (81%)

Query: 1   VAWDFSRAAARAVSDAIPILEKAREVYICTVTSEKTIPSRRSSSELAKNLSRHGIDVIVE 60
           VAWDFSR AARA++DA+P+LEKA++V + TV +EK + +R S+ E+AKN+SRHG+ V ++
Sbjct: 161 VAWDFSRTAARAIADAMPVLEKAQQVRVVTVFNEKALGARNSAEEVAKNISRHGVYVTLD 220

Query: 61  EVDAAGRAIGDVLATQIESRRCNLLVMGGYGHSRLREFVLGGATRSILANPPIPVLFSH 119
           EV AA R IG+VL +   S   + LVMG YGHSRLREF+LGGATRS+LA+PP+P+LFSH
Sbjct: 221 EVGAAARTIGEVLESHAASCGADALVMGAYGHSRLREFILGGATRSLLASPPLPILFSH 279


>ref|YP_317638.1| universal stress protein UspA [Nitrobacter winogradskyi Nb-255]
 gb|ABA04286.1| Universal stress protein, UspA [Nitrobacter winogradskyi Nb-255]
          Length = 279

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/118 (63%), Positives = 92/118 (77%)

Query: 1   VAWDFSRAAARAVSDAIPILEKAREVYICTVTSEKTIPSRRSSSELAKNLSRHGIDVIVE 60
           VAWDFSR A RAVSDA+P+LEKA +V I  V +EK+  S+RS  ELA+NL+RHGID +++
Sbjct: 161 VAWDFSRTATRAVSDALPLLEKAEKVCIFIVRNEKSFNSQRSPDELAENLARHGIDAVLD 220

Query: 61  EVDAAGRAIGDVLATQIESRRCNLLVMGGYGHSRLREFVLGGATRSILANPPIPVLFS 118
           EVDA GR IG+V    + SR  +LLVMG YG SR REFVLGGATRS+L+ PP+PV FS
Sbjct: 221 EVDADGRPIGEVFRAYVLSRGIDLLVMGAYGQSRWREFVLGGATRSLLSKPPVPVFFS 278