BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0007.p (543 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08073084.1| fimbrial biogenesis outer membrane usher prot... 508 e-141 ref|YP_004134244.1| fimbrial biogenesis outer membrane usher pro... 480 e-133 ref|NP_107980.1| hypothetical protein mll7724 [Mesorhizobium lot... 461 e-127 ref|YP_004552189.1| fimbrial biogenesis outer membrane usher pro... 458 e-126 ref|YP_002540762.1| hypothetical protein Arad_7725 [Agrobacteriu... 434 e-119 >ref|ZP_08073084.1| fimbrial biogenesis outer membrane usher protein [Methylocystis sp. ATCC 49242] gb|EFX99256.1| fimbrial biogenesis outer membrane usher protein [Methylocystis sp. ATCC 49242] Length = 823 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 274/431 (63%), Positives = 337/431 (78%), Gaps = 4/431 (0%) Query: 3 SARAEGLMDVPGPTDAKAMTAERSLQLNVVINESPVNLIGSFQLRSDGSLAASPQELREI 62 +ARA+ + D G ++ A+TA R LQL V I+ +P+ LIG+F+ +DGSLAA+ +E R I Sbjct: 25 AARAQQVPDASGLSNGVAITA-RELQLEVFIDGAPIGLIGAFRQLTDGSLAATREETRAI 83 Query: 63 GLIPIDEAIGSDSLVRLDRLPGVSYRVDEANQTVRISAPDAARAPHIVDVRPQ-TGGYVA 121 GL P EAIG+D LV +DRL GV YR+DEA+Q + + + ARAP ++D+ P+ T Sbjct: 84 GLEPRREAIGTDKLVHIDRLAGVQYRIDEASQRIFFTVAETARAPRVIDLSPRRTAENPI 143 Query: 122 PQRSYGGVLNYTLFAASDGAFWRDLKSFQGLSGAFDGRVFSPYGTFSQSAIASTASPELG 181 P S+GGVLNYTLFA SDG F+R + +G+SG FD RVFSPYGT SQS +A++A +LG Sbjct: 144 PLTSFGGVLNYTLFANSDGTFFRYPLNLRGVSGNFDARVFSPYGTLSQSFLANSAVRQLG 203 Query: 182 GLTRLDSSWAYSDTESLITYRGGDTISGGLSWTRSVRLGGVQVQTNFALRPDLVTLPIPA 241 RLD+ W YSD E LITYR GDTISGGL+WTR VR+ GVQVQ NFALRPDLVTLP+P Sbjct: 204 -FVRLDTRWTYSDPERLITYRVGDTISGGLAWTRPVRMSGVQVQRNFALRPDLVTLPLPV 262 Query: 242 LSGSAAVPSTLDVYTQNVKTFTGSVPTGPFQVTNLPIATGAGTASVVLNDALGRQIVTTL 301 LSGSAAVPST+DVY QNVKT++G+VP+GPF++T++P+A+GAGTA VVL+D+LGR+ V TL Sbjct: 263 LSGSAAVPSTIDVYAQNVKTYSGAVPSGPFEITHMPVASGAGTAQVVLHDSLGRETVATL 322 Query: 302 PFYVSSQLLKEGLYDFSAELGFARRFYGIESNNYDARPVGSASLRYGLTNWLTL-EGHAE 360 PFYVSS+ L EGLYDFS E GFARRF GIESNNYD RP+GSAS RYGLTNWLTL Sbjct: 323 PFYVSSKQLAEGLYDFSMEAGFARRFSGIESNNYDRRPIGSASARYGLTNWLTLEGHGEG 382 Query: 361 GGAGLSNGGVGAAFSLGSFGAASFAVAGSQVGDRAGGLFNASFETSFWGMSLYARTQRTF 420 GG GL N G GAAF+LGS+GAAS A+AGS+ G GGLFNASFET+ G+S+YAR+QRTF Sbjct: 383 GGGGLINAGAGAAFTLGSWGAASLALAGSRFGGLTGGLFNASFETNIRGVSIYARSQRTF 442 Query: 421 GNYDDIASVTA 431 GNY DIA+VTA Sbjct: 443 GNYLDIAAVTA 453 >ref|YP_004134244.1| fimbrial biogenesis outer membrane usher protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV15070.1| fimbrial biogenesis outer membrane usher protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 803 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 246/434 (56%), Positives = 303/434 (69%), Gaps = 2/434 (0%) Query: 18 AKAMTAERSLQLNVVINESPVNLIGSFQLRSDGSLAASPQELREIGLIPIDEAIGSDSLV 77 A T R L L V IN+ LIG+F DG LAA+P EL+++GL P+D A +D LV Sbjct: 38 APDQTGRRDLYLEVFINDVSTELIGTFTQFPDGRLAATPDELKQVGLKPVDSA-NADGLV 96 Query: 78 RLDRLPGVSYRVDEANQTVRISAPDAARAPHIVDVRP-QTGGYVAPQRSYGGVLNYTLFA 136 RLD+LP V++R+DE Q + ++ + RA +VDV+ + G + Q YGGV NY+LFA Sbjct: 97 RLDQLPDVAFRIDEPTQRLFVTTTNEGRAARVVDVQAAEKGDRIQAQSGYGGVFNYSLFA 156 Query: 137 ASDGAFWRDLKSFQGLSGAFDGRVFSPYGTFSQSAIASTASPELGGLTRLDSSWAYSDTE 196 +S+ + FQG+SGAFD RVFSPYGT +QS IA + E GG TRL+++W+YSD E Sbjct: 157 SSNSLVENRVDLFQGISGAFDARVFSPYGTLNQSFIAGYSDGEFGGFTRLNTTWSYSDPE 216 Query: 197 SLITYRGGDTISGGLSWTRSVRLGGVQVQTNFALRPDLVTLPIPALSGSAAVPSTLDVYT 256 ++TYR GD ISGGL+WTR V LGG+Q Q NFALR DLVTLP+P+ G+AAVPSTL+VY Sbjct: 217 RMMTYRAGDFISGGLAWTRPVYLGGIQAQRNFALRSDLVTLPLPSFGGTAAVPSTLEVYA 276 Query: 257 QNVKTFTGSVPTGPFQVTNLPIATGAGTASVVLNDALGRQIVTTLPFYVSSQLLKEGLYD 316 QNV+T+TG +P GPFQVTNLP+ GAG A VVL D+LGR+ T LPFY SS +L +GL D Sbjct: 277 QNVRTYTGEIPAGPFQVTNLPVFAGAGEAQVVLRDSLGRETTTRLPFYTSSDMLGQGLLD 336 Query: 317 FSAELGFARRFYGIESNNYDARPVGSASLRYGLTNWLTLEGHAEGGAGLSNGGVGAAFSL 376 FSAE+GF RR +G ESN+Y G A+ RYGLTNWLTLEGHAEGG GL NGGVGAAF L Sbjct: 337 FSAEIGFPRRNFGTESNDYANGVFGVATARYGLTNWLTLEGHAEGGEGLINGGVGAAFPL 396 Query: 377 GSFGAASFAVAGSQVGDRAGGLFNASFETSFWGMSLYARTQRTFGNYDDIASVTAPILDP 436 G +GAAS AVAGS R G L NAS E S+ G S+Y R QR FG+YDDIA+VTA Sbjct: 397 GPYGAASVAVAGSHQDGRTGSLVNASLEMSYEGWSIYGRIQRAFGDYDDIAAVTAEPTLS 456 Query: 437 KLGSSSFFSAWCQR 450 + G FS R Sbjct: 457 EPGDVPIFSTGVPR 470 >ref|NP_107980.1| hypothetical protein mll7724 [Mesorhizobium loti MAFF303099] dbj|BAB54125.1| mll7724 [Mesorhizobium loti MAFF303099] Length = 807 Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust. Identities = 242/410 (59%), Positives = 300/410 (73%), Gaps = 1/410 (0%) Query: 25 RSLQLNVVINESPVNLIGSFQLRSDGSLAASPQELREIGLIPIDEAIGSDSLVRLDRLPG 84 R L L V +N+ LIG+F+ SDG LA++P EL+++GL P++ A+G+D LVR+DRLP Sbjct: 47 RDLYLEVFVNDVSTGLIGAFRQLSDGGLASTPDELQQVGLQPVEGAMGADHLVRVDRLPD 106 Query: 85 VSYRVDEANQTVRISAPDAARAPHIVDVRPQ-TGGYVAPQRSYGGVLNYTLFAASDGAFW 143 VSYR+DEA Q + ++A +AAR+ H++D+ PQ + PQ +GGVLNY+LFA+ + Sbjct: 107 VSYRIDEATQRLYVTATNAARSAHVIDIAPQGKQDRLKPQSGFGGVLNYSLFASINDLKD 166 Query: 144 RDLKSFQGLSGAFDGRVFSPYGTFSQSAIASTASPELGGLTRLDSSWAYSDTESLITYRG 203 R + F G+SG FD R+FSPYGT SQ I S + EL G TRL+++W+YSD E L+TY+ Sbjct: 167 RTSQLFSGVSGGFDARLFSPYGTLSQGFIVSLSDGELDGFTRLNTTWSYSDPERLLTYKA 226 Query: 204 GDTISGGLSWTRSVRLGGVQVQTNFALRPDLVTLPIPALSGSAAVPSTLDVYTQNVKTFT 263 GD +SGGL+WTRSV LGG QVQ NF+LR DLVTLP+P SG+AAVPSTL+VYTQNV+T+T Sbjct: 227 GDFVSGGLAWTRSVYLGGFQVQRNFSLRSDLVTLPLPNFSGTAAVPSTLEVYTQNVRTYT 286 Query: 264 GSVPTGPFQVTNLPIATGAGTASVVLNDALGRQIVTTLPFYVSSQLLKEGLYDFSAELGF 323 VP GPFQVTNLPI TGAG A +VL D+LGR+ TLPFY SS LLK GL DFSAE+G Sbjct: 287 SDVPAGPFQVTNLPIFTGAGQAQIVLRDSLGRETTVTLPFYNSSMLLKRGLLDFSAEVGS 346 Query: 324 ARRFYGIESNNYDARPVGSASLRYGLTNWLTLEGHAEGGAGLSNGGVGAAFSLGSFGAAS 383 RR +G+ES +YD GSAS RYGLTN LTLEGH EGG L NGG G AF L FGAAS Sbjct: 347 PRRNFGVESYDYDGGIYGSASARYGLTNRLTLEGHVEGGEDLVNGGAGIAFPLSYFGAAS 406 Query: 384 FAVAGSQVGDRAGGLFNASFETSFWGMSLYARTQRTFGNYDDIASVTAPI 433 A AGS+ + G L NAS E S+ G SLY R QR F +Y+DIASVTA I Sbjct: 407 IAAAGSRHNGQTGALVNASLELSYDGWSLYGRMQRAFADYEDIASVTAEI 456 >ref|YP_004552189.1| fimbrial biogenesis outer membrane usher protein [Sinorhizobium meliloti AK83] gb|AEG58265.1| fimbrial biogenesis outer membrane usher protein [Sinorhizobium meliloti AK83] Length = 805 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 240/427 (56%), Positives = 299/427 (70%), Gaps = 2/427 (0%) Query: 25 RSLQLNVVINESPVNLIGSFQLRSDGSLAASPQELREIGLIPIDEAIGSDSLVRLDRLPG 84 R + L V IN+ + +IGSF+ DGSLAA ELRE+G+ P A G D LV L+ LPG Sbjct: 47 RDVLLEVFINDVSMKMIGSFKEHPDGSLAAPADELREVGIKPSGGASGDD-LVELNSLPG 105 Query: 85 VSYRVDEANQTVRISAPDAARAPHIVDVRPQTGGYV-APQRSYGGVLNYTLFAASDGAFW 143 +SY VD Q + ++A + RA +V+V P+ + Q YGGVLNYTLFA+S+ F Sbjct: 106 LSYHVDAETQRLYVTATNEGRAARVVNVGPKEKTEIPEAQSGYGGVLNYTLFASSNTLFE 165 Query: 144 RDLKSFQGLSGAFDGRVFSPYGTFSQSAIASTASPELGGLTRLDSSWAYSDTESLITYRG 203 D+ FQG+SGAFD R FSPYGT SQS I + +L G+TRL+S+W+YSD + L+TYR Sbjct: 166 DDVDVFQGVSGAFDARFFSPYGTVSQSFITGYSDGDLDGITRLNSTWSYSDPKRLMTYRM 225 Query: 204 GDTISGGLSWTRSVRLGGVQVQTNFALRPDLVTLPIPALSGSAAVPSTLDVYTQNVKTFT 263 GD +GGLSWTR V GG+Q Q NFALR DLVTLP+P+ G+AAVPSTL++YTQNV+T++ Sbjct: 226 GDFTTGGLSWTRPVYFGGIQAQRNFALRSDLVTLPLPSFEGTAAVPSTLEIYTQNVRTYS 285 Query: 264 GSVPTGPFQVTNLPIATGAGTASVVLNDALGRQIVTTLPFYVSSQLLKEGLYDFSAELGF 323 VP GPFQVTNLP+ +G G A VVL D+LGR+ TLPFY S+ LL++GL DFSAE+G Sbjct: 286 SDVPAGPFQVTNLPVFSGGGEARVVLRDSLGRETTATLPFYSSNLLLRKGLLDFSAEVGV 345 Query: 324 ARRFYGIESNNYDARPVGSASLRYGLTNWLTLEGHAEGGAGLSNGGVGAAFSLGSFGAAS 383 RR +G+ESN+YD R +G A+ RYGLT+WLTLE H EGG L NGGVGAAF +GS+G AS Sbjct: 346 PRRNFGVESNDYDDRVMGVATARYGLTDWLTLESHFEGGEDLLNGGVGAAFPVGSWGVAS 405 Query: 384 FAVAGSQVGDRAGGLFNASFETSFWGMSLYARTQRTFGNYDDIASVTAPILDPKLGSSSF 443 AVAGS G R+G LFNAS E ++ SLY R QR F +YDDIASVTA G Sbjct: 406 IAVAGSASGGRSGALFNASLEMTYDQWSLYGRMQRAFADYDDIASVTAEPDFTNPGEFPV 465 Query: 444 FSAWCQR 450 FSA R Sbjct: 466 FSAGVPR 472 >ref|YP_002540762.1| hypothetical protein Arad_7725 [Agrobacterium radiobacter K84] gb|ACM29167.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 804 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 233/433 (53%), Positives = 309/433 (71%), Gaps = 3/433 (0%) Query: 1 MASARAEGLMDVPGPTDAKAMTAE-RSLQLNVVINESPVNLIGSFQLRSDGSLAASPQEL 59 +++ A+ + + P + M A+ R L L V IN++ + +IG+F+ + DGSL AS EL Sbjct: 22 VSALHAQEVPNEPATANTDDMPADARDLFLEVFINDASMKMIGNFKQQPDGSLKASAGEL 81 Query: 60 REIGLIPIDEAIGSDSLVRLDRLPGVSYRVDEANQTVRISAPDAARAPHIVDV-RPQTGG 118 RE+G+ P A D L+ LD+LP +SYRVD NQ + ++ ++ RA I+++ + Q Sbjct: 82 REVGIKPPAGA-ADDELIELDKLPDLSYRVDAQNQQIYVTTTNSGRAARIINIGKNQRND 140 Query: 119 YVAPQRSYGGVLNYTLFAASDGAFWRDLKSFQGLSGAFDGRVFSPYGTFSQSAIASTASP 178 PQ YG VLNY+LFA+S+ D FQG+SG+FD RVFSPYG SQS IA + Sbjct: 141 IPEPQSGYGSVLNYSLFASSNSLGDSDAGLFQGISGSFDARVFSPYGALSQSFIAGYSDG 200 Query: 179 ELGGLTRLDSSWAYSDTESLITYRGGDTISGGLSWTRSVRLGGVQVQTNFALRPDLVTLP 238 L G+TRL+++W+YSD + LITYR GD +GGLSWTR V GG+Q Q NFALR DLVT P Sbjct: 201 SLDGITRLNTTWSYSDPKKLITYRVGDFTTGGLSWTRPVYFGGIQAQRNFALRSDLVTEP 260 Query: 239 IPALSGSAAVPSTLDVYTQNVKTFTGSVPTGPFQVTNLPIATGAGTASVVLNDALGRQIV 298 +PA G+AAVPSTL++YTQNV++++G VP GP+QVTNLP+ +GAG A VVL D+LGR+ Sbjct: 261 LPAFEGTAAVPSTLEIYTQNVRSYSGDVPAGPYQVTNLPVFSGAGEARVVLRDSLGRETT 320 Query: 299 TTLPFYVSSQLLKEGLYDFSAELGFARRFYGIESNNYDARPVGSASLRYGLTNWLTLEGH 358 TLPFY S++LL++GL+DFS E+G RR +GIES++YD R +G A+ RYGLT+WLTLE H Sbjct: 321 ATLPFYSSNRLLRQGLHDFSVEIGAPRRNFGIESSDYDGRIMGVATARYGLTDWLTLESH 380 Query: 359 AEGGAGLSNGGVGAAFSLGSFGAASFAVAGSQVGDRAGGLFNASFETSFWGMSLYARTQR 418 EGGA L NGG+GAAF +G++G AS AVAGS G R+G LFNA+ E S+ S+Y R QR Sbjct: 381 FEGGANLLNGGIGAAFPIGAWGVASAAVAGSSSGSRSGALFNATLEMSYNDWSIYTRMQR 440 Query: 419 TFGNYDDIASVTA 431 F NYDDIASVTA Sbjct: 441 AFDNYDDIASVTA 453