BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0007.p         (199 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774928.1| conjugal transfer protein [Bradyrhizobium japon...   376   e-102
ref|ZP_07026212.1| P-type conjugative transfer ATPase TrbB [Afip...   332   2e-89
ref|YP_002277171.1| P-type conjugative transfer ATPase TrbB [Glu...   319   2e-85
ref|ZP_06888470.1| P-type conjugative transfer ATPase TrbB [Meth...   315   2e-84
ref|ZP_06888606.1| P-type conjugative transfer ATPase TrbB [Meth...   313   9e-84

>ref|NP_774928.1| conjugal transfer protein [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53553.1| conjugal transfer protein [Bradyrhizobium japonicum USDA 110]
          Length = 332

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/199 (97%), Positives = 196/199 (98%)

Query: 1   MTAGQAGMLREAVAARKNILVAGGTSTGKTTLTNALLAEIAGTTDRVVLIEDTRELQCRA 60
           MTAGQAGMLREAVAARKNILVAGGTSTGKTTLTNALLAEIAGTTDRVVLIEDTRELQCRA
Sbjct: 134 MTAGQAGMLREAVAARKNILVAGGTSTGKTTLTNALLAEIAGTTDRVVLIEDTRELQCRA 193

Query: 61  PNLVALRTKDGVASLSDLVRSSLRLRPDRIPVGEVRGSEALELLKAWGTGHPGGIGTIHA 120
           PNLVALRTKDGVASLSDLVRSSLRLRPDRIP+GEVRGSEALELLKAWGTGHPGGIGTIHA
Sbjct: 194 PNLVALRTKDGVASLSDLVRSSLRLRPDRIPIGEVRGSEALELLKAWGTGHPGGIGTIHA 253

Query: 121 GTALGALRRLEQLIQEAVLTVPKALIAETIDLVAVLRGRGSERRLAELALVAGLDPATGD 180
           GTALGALRRLEQLIQEAVLTVPKALIAETIDLVAVLRGRGSERRLAELALVAGLDPATGD
Sbjct: 254 GTALGALRRLEQLIQEAVLTVPKALIAETIDLVAVLRGRGSERRLAELALVAGLDPATGD 313

Query: 181 YRVQSAGAGGQSSLPGDPS 199
           YRV SA AGG SSLPGDPS
Sbjct: 314 YRVNSAAAGGPSSLPGDPS 332


>ref|ZP_07026212.1| P-type conjugative transfer ATPase TrbB [Afipia sp. 1NLS2]
 gb|EFI53354.1| P-type conjugative transfer ATPase TrbB [Afipia sp. 1NLS2]
          Length = 337

 Score =  332 bits (851), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 171/184 (92%), Positives = 177/184 (96%)

Query: 16  RKNILVAGGTSTGKTTLTNALLAEIAGTTDRVVLIEDTRELQCRAPNLVALRTKDGVASL 75
           RKNILVAGGTSTGKTTLTNALLAEIAGTTDRVVLIEDTRELQCRAPNLVALRTKDGVASL
Sbjct: 154 RKNILVAGGTSTGKTTLTNALLAEIAGTTDRVVLIEDTRELQCRAPNLVALRTKDGVASL 213

Query: 76  SDLVRSSLRLRPDRIPVGEVRGSEALELLKAWGTGHPGGIGTIHAGTALGALRRLEQLIQ 135
           SDLVRSSLRLRPDRIP+GEVRG+EAL+LLKAWGTGHPGGIGTIHAGTALGALRRLEQLIQ
Sbjct: 214 SDLVRSSLRLRPDRIPIGEVRGAEALDLLKAWGTGHPGGIGTIHAGTALGALRRLEQLIQ 273

Query: 136 EAVLTVPKALIAETIDLVAVLRGRGSERRLAELALVAGLDPATGDYRVQSAGAGGQSSLP 195
           EAV+TVP+ALIAETIDLV VLRGRGSERRL+ELA VAGLDPATGDYRVQSAGAGG     
Sbjct: 274 EAVVTVPRALIAETIDLVTVLRGRGSERRLSELAFVAGLDPATGDYRVQSAGAGGDPLPL 333

Query: 196 GDPS 199
           GDPS
Sbjct: 334 GDPS 337


>ref|YP_002277171.1| P-type conjugative transfer ATPase TrbB [Gluconacetobacter
           diazotrophicus PAl 5]
 gb|ACI52556.1| P-type conjugative transfer ATPase TrbB [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 329

 Score =  319 bits (817), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 177/199 (88%), Positives = 187/199 (93%), Gaps = 3/199 (1%)

Query: 1   MTAGQAGMLREAVAARKNILVAGGTSTGKTTLTNALLAEIAGTTDRVVLIEDTRELQCRA 60
           MTAGQA  LREAVA+RKNILVAGGT TGKTTLTNALLAEIAGT+DRVVLIEDTRELQCRA
Sbjct: 134 MTAGQAASLREAVASRKNILVAGGTGTGKTTLTNALLAEIAGTSDRVVLIEDTRELQCRA 193

Query: 61  PNLVALRTKDGVASLSDLVRSSLRLRPDRIPVGEVRGSEALELLKAWGTGHPGGIGTIHA 120
           PNLVA+RTKDGVASLSDLVRSSLRLRPDRIP+GEVRG+EAL+LLKAWGTGHPGGIGTIHA
Sbjct: 194 PNLVAMRTKDGVASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAWGTGHPGGIGTIHA 253

Query: 121 GTALGALRRLEQLIQEAVLTVPKALIAETIDLVAVLRGRGSERRLAELALVAGLDPATGD 180
           GTALGA+RRLEQLIQEAV+TVPK LIAETIDLVAVLRGRG ERRL+ELAL+AGLDPATGD
Sbjct: 254 GTALGAIRRLEQLIQEAVVTVPKTLIAETIDLVAVLRGRGGERRLSELALIAGLDPATGD 313

Query: 181 YRVQSAGAGGQSSLPGDPS 199
           YRVQ A AGG     GDPS
Sbjct: 314 YRVQPAEAGGDL---GDPS 329


>ref|ZP_06888470.1| P-type conjugative transfer ATPase TrbB [Methylosinus trichosporium
           OB3b]
 gb|EFH03107.1| P-type conjugative transfer ATPase TrbB [Methylosinus trichosporium
           OB3b]
          Length = 328

 Score =  315 bits (808), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 164/195 (84%), Positives = 176/195 (90%), Gaps = 3/195 (1%)

Query: 1   MTAGQAGMLREAVAARKNILVAGGTSTGKTTLTNALLAEIAGTTDRVVLIEDTRELQCRA 60
           MTAGQA  LR+AVA RKNILV GGTSTGKTTL NALLAEIA T+DR+VLIEDTRELQCRA
Sbjct: 134 MTAGQADALRKAVADRKNILVVGGTSTGKTTLANALLAEIAHTSDRIVLIEDTRELQCRA 193

Query: 61  PNLVALRTKDGVASLSDLVRSSLRLRPDRIPVGEVRGSEALELLKAWGTGHPGGIGTIHA 120
           PNLVALRTKDGV SLSDLVRSSLRLRPDRIP+GEVRG+EAL+LLKAWGTGHPGGI TIHA
Sbjct: 194 PNLVALRTKDGVVSLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAWGTGHPGGIATIHA 253

Query: 121 GTALGALRRLEQLIQEAVLTVPKALIAETIDLVAVLRGRGSERRLAELALVAGLDPATGD 180
           G ALGALRRLEQLIQEAV+TVP+ALIAETID++AVL+GRG ERRLAELA V GLDP+TGD
Sbjct: 254 GAALGALRRLEQLIQEAVITVPRALIAETIDVIAVLQGRGGERRLAELATVDGLDPSTGD 313

Query: 181 YRVQSAG---AGGQS 192
           YRV S     AG QS
Sbjct: 314 YRVLSIAANVAGDQS 328


>ref|ZP_06888606.1| P-type conjugative transfer ATPase TrbB [Methylosinus trichosporium
           OB3b]
 gb|EFH02874.1| P-type conjugative transfer ATPase TrbB [Methylosinus trichosporium
           OB3b]
          Length = 312

 Score =  313 bits (802), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 159/183 (86%), Positives = 171/183 (93%)

Query: 1   MTAGQAGMLREAVAARKNILVAGGTSTGKTTLTNALLAEIAGTTDRVVLIEDTRELQCRA 60
           MT+ QA  LR++VA RKNILVAGGTSTGKTTL NALLAEIA T DRVVLIEDTRELQCRA
Sbjct: 118 MTSSQADALRKSVADRKNILVAGGTSTGKTTLANALLAEIAHTADRVVLIEDTRELQCRA 177

Query: 61  PNLVALRTKDGVASLSDLVRSSLRLRPDRIPVGEVRGSEALELLKAWGTGHPGGIGTIHA 120
           PNLVALRTKDGV SLSDLVRSSLRLRPDRIP+GEVRG+EAL+LLKAWGTGHPGGI TIHA
Sbjct: 178 PNLVALRTKDGVVSLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAWGTGHPGGIATIHA 237

Query: 121 GTALGALRRLEQLIQEAVLTVPKALIAETIDLVAVLRGRGSERRLAELALVAGLDPATGD 180
           GTALGALRRLEQLIQEAV+TVP+ALIAETID++AVL+GRG ERRLAEL  VAGLDP+TGD
Sbjct: 238 GTALGALRRLEQLIQEAVITVPRALIAETIDVIAVLQGRGGERRLAELVTVAGLDPSTGD 297

Query: 181 YRV 183
           YRV
Sbjct: 298 YRV 300