BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0004.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774925.1| conjugal transfer ATPase TrbE [Bradyrhizobium j...   290   6e-77
ref|ZP_07026209.1| AAA ATPase [Afipia sp. 1NLS2] >gi|298593151|g...   269   1e-70
ref|YP_002277174.1| conjugal transfer ATPase TrbE [Gluconacetoba...   265   2e-69
ref|ZP_08868532.1| Conjugal transfer protein trbE [Azospirillum ...   261   3e-68
ref|ZP_06888603.1| AAA ATPase [Methylosinus trichosporium OB3b] ...   252   1e-65

>ref|NP_774925.1| conjugal transfer ATPase TrbE [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53550.1| trbE [Bradyrhizobium japonicum USDA 110]
          Length = 812

 Score =  290 bits (741), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 140/143 (97%), Positives = 142/143 (99%)

Query: 1   MLHLAEYRNRPHSLADFLPWAALVEKGVILNKDGAFQRTARFRGPDLDSATPAELVGVTA 60
           ML+LAEYRNRPHSLADFLPWAALVEKGV+LNKDGAFQRTARFRGPDLDSATPAELVGVTA
Sbjct: 1   MLNLAEYRNRPHSLADFLPWAALVEKGVVLNKDGAFQRTARFRGPDLDSATPAELVGVTA 60

Query: 61  RLNNALRRLGSGWAIFVEAQRIAAQTYPHNTFPDAASALVDLERRDAFEEAGAHFESRYF 120
           RLNNALRRLGSGWAIFVEAQRIAAQTYPHNTFPDAASALVDLERRDAFEEAGAHFESRYF
Sbjct: 61  RLNNALRRLGSGWAIFVEAQRIAAQTYPHNTFPDAASALVDLERRDAFEEAGAHFESRYF 120

Query: 121 LTFVWLPPAEDASRIENWLYEGR 143
           LTFVWLPPAEDASRIE WLYEGR
Sbjct: 121 LTFVWLPPAEDASRIEGWLYEGR 143


>ref|ZP_07026209.1| AAA ATPase [Afipia sp. 1NLS2]
 gb|EFI53351.1| AAA ATPase [Afipia sp. 1NLS2]
          Length = 812

 Score =  269 bits (687), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/143 (90%), Positives = 137/143 (95%)

Query: 1   MLHLAEYRNRPHSLADFLPWAALVEKGVILNKDGAFQRTARFRGPDLDSATPAELVGVTA 60
           ML+LAEYRN P +LADFLPWAALVE GVILNKDG+FQRTARFRGPDLDSATPAELVGVTA
Sbjct: 1   MLNLAEYRNCPATLADFLPWAALVENGVILNKDGSFQRTARFRGPDLDSATPAELVGVTA 60

Query: 61  RLNNALRRLGSGWAIFVEAQRIAAQTYPHNTFPDAASALVDLERRDAFEEAGAHFESRYF 120
           RLNNALRRLGSGWAIFVEAQRIAAQTYPH++FPD ASALVDLER+ AFEEAGAHFESRYF
Sbjct: 61  RLNNALRRLGSGWAIFVEAQRIAAQTYPHSSFPDPASALVDLERQAAFEEAGAHFESRYF 120

Query: 121 LTFVWLPPAEDASRIENWLYEGR 143
           LTFVWLPPAEDASR+E WLYEGR
Sbjct: 121 LTFVWLPPAEDASRVEGWLYEGR 143


>ref|YP_002277174.1| conjugal transfer ATPase TrbE [Gluconacetobacter diazotrophicus PAl
           5]
 gb|ACI52559.1| AAA ATPase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 812

 Score =  265 bits (677), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 128/143 (89%), Positives = 137/143 (95%)

Query: 1   MLHLAEYRNRPHSLADFLPWAALVEKGVILNKDGAFQRTARFRGPDLDSATPAELVGVTA 60
           ML+LAEYR+RP  LADFLPWAALV +GV++NKDG+FQRTARFRGPDLDSATPAELVGVTA
Sbjct: 1   MLNLAEYRHRPSGLADFLPWAALVGEGVVINKDGSFQRTARFRGPDLDSATPAELVGVTA 60

Query: 61  RLNNALRRLGSGWAIFVEAQRIAAQTYPHNTFPDAASALVDLERRDAFEEAGAHFESRYF 120
           RLNNALRRLGSGWAIFVEAQRIAAQTYPH+ FPD ASALVDLER+DAFEEAGAHFESRYF
Sbjct: 61  RLNNALRRLGSGWAIFVEAQRIAAQTYPHSIFPDPASALVDLERQDAFEEAGAHFESRYF 120

Query: 121 LTFVWLPPAEDASRIENWLYEGR 143
           LTFVWLPPAEDASRIE +LYEGR
Sbjct: 121 LTFVWLPPAEDASRIEGFLYEGR 143


>ref|ZP_08868532.1| Conjugal transfer protein trbE [Azospirillum amazonense Y2]
 gb|EGY01874.1| Conjugal transfer protein trbE [Azospirillum amazonense Y2]
          Length = 812

 Score =  261 bits (667), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 125/143 (87%), Positives = 135/143 (94%)

Query: 1   MLHLAEYRNRPHSLADFLPWAALVEKGVILNKDGAFQRTARFRGPDLDSATPAELVGVTA 60
           ML+LAEYR+RP  LADFLPWAALVE+GV+LNKDG+FQRTARFRGPDLDSATPAELV VTA
Sbjct: 1   MLNLAEYRHRPAGLADFLPWAALVEEGVVLNKDGSFQRTARFRGPDLDSATPAELVSVTA 60

Query: 61  RLNNALRRLGSGWAIFVEAQRIAAQTYPHNTFPDAASALVDLERRDAFEEAGAHFESRYF 120
           RLNNALRRLGSGWAIFVEAQR AAQ+YPH+TFPD ASALVDLER+D FEEA AHFESRYF
Sbjct: 61  RLNNALRRLGSGWAIFVEAQRTAAQSYPHSTFPDPASALVDLERQDDFEEASAHFESRYF 120

Query: 121 LTFVWLPPAEDASRIENWLYEGR 143
           LTFVWLPPAE+ASR+E WLYEGR
Sbjct: 121 LTFVWLPPAEEASRVEGWLYEGR 143


>ref|ZP_06888603.1| AAA ATPase [Methylosinus trichosporium OB3b]
 gb|EFH02871.1| AAA ATPase [Methylosinus trichosporium OB3b]
          Length = 811

 Score =  252 bits (644), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 122/143 (85%), Positives = 132/143 (92%)

Query: 1   MLHLAEYRNRPHSLADFLPWAALVEKGVILNKDGAFQRTARFRGPDLDSATPAELVGVTA 60
           ML+LAEYR+RP SLADFLPWAALV +GV+LNKDG+FQRTARFRGPDLDSATPAELVGVTA
Sbjct: 1   MLNLAEYRSRPTSLADFLPWAALVAEGVVLNKDGSFQRTARFRGPDLDSATPAELVGVTA 60

Query: 61  RLNNALRRLGSGWAIFVEAQRIAAQTYPHNTFPDAASALVDLERRDAFEEAGAHFESRYF 120
           RLNNALRRLGSGWA+FVEA R  AQ YPH+ FPDAASALVDLER++AFEEAGAHFES YF
Sbjct: 61  RLNNALRRLGSGWAVFVEADRAPAQHYPHDRFPDAASALVDLERQNAFEEAGAHFESSYF 120

Query: 121 LTFVWLPPAEDASRIENWLYEGR 143
           LT +WLPP EDASR ENWLYEGR
Sbjct: 121 LTLLWLPPEEDASRAENWLYEGR 143