BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0003.p         (108 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004475326.1| polyamine-transporting ATPase [Pseudomonas f...    35   2.7  
ref|ZP_05571003.1| hypothetical protein Faci_06235 [Ferroplasma ...    35   3.6  
ref|ZP_07739687.1| peptidase S41 [Aminomonas paucivorans DSM 122...    34   5.6  

>ref|YP_004475326.1| polyamine-transporting ATPase [Pseudomonas fulva 12-X]
 gb|AEF23232.1| Polyamine-transporting ATPase [Pseudomonas fulva 12-X]
          Length = 277

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 9/75 (12%)

Query: 7   RLEATGKRFVREQRVEMHRRLGDAHAL------LPGG-DGRMQVGQRLAIIEPR-HLRHE 58
           RL  + KR  REQ  E+ +++G  HAL      L GG   R+ + Q L I++PR  L  E
Sbjct: 117 RLFGSAKRAAREQAAELLKKVGLGHALDKYPSQLSGGMQQRLAIAQAL-IMKPRVLLLDE 175

Query: 59  PFDKLQDAVXSPSHA 73
           PF  L   +    HA
Sbjct: 176 PFGALDPGIRKDMHA 190


>ref|ZP_05571003.1| hypothetical protein Faci_06235 [Ferroplasma acidarmanus fer1]
          Length = 326

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%)

Query: 3   VAEPRLEATGKRFVREQRVEMHRRLGDAHALLPGGDGRMQVGQRLAIIEPRHLRHEPFDK 62
           V+ P L+    R V E    +   +    ALLP G G + +G +L  I P H+   P + 
Sbjct: 249 VSGPLLDQLALRIVNEVEETLREDMNRITALLPVGGGSILIGNKLDTIAPGHMIKVPPED 308

Query: 63  LQDA 66
           +Q A
Sbjct: 309 MQFA 312


>ref|ZP_07739687.1| peptidase S41 [Aminomonas paucivorans DSM 12260]
 gb|EFQ23576.1| peptidase S41 [Aminomonas paucivorans DSM 12260]
          Length = 575

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 2   MVAEPRLEATGKRFVREQRVEMHRRLGDAHALLPGGDGRMQVGQRLAIIEPRHLRHEPFD 61
           +VAE     T  R    +R E+  R+   H +LPGG G +++G  L + +P H     F 
Sbjct: 311 LVAEDDGGWTLSRVDFARRAELSDRV--EHRILPGGFGYVRLGLELDLADPEHYPEGLFR 368

Query: 62  KLQDAVXS 69
           + Q+A+ S
Sbjct: 369 QFQEAIRS 376