BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0042.p         (227 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772189.1| hypothetical protein bll5549 [Bradyrhizobium ja...   408   e-112
ref|YP_001241109.1| hypothetical protein BBta_5211 [Bradyrhizobi...   403   e-110
ref|YP_001205007.1| hypothetical protein BRADO2963 [Bradyrhizobi...   399   e-109
ref|YP_485773.1| FHA domain-containing protein [Rhodopseudomonas...   397   e-109
ref|YP_532987.1| hypothetical protein RPC_3126 [Rhodopseudomonas...   394   e-108

>ref|NP_772189.1| hypothetical protein bll5549 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50814.1| bll5549 [Bradyrhizobium japonicum USDA 110]
          Length = 357

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/227 (88%), Positives = 216/227 (95%)

Query: 1   VFADKPDDNGTYKLIREERGATPNVVLPPGNYVVHVALGLVSAVRAVSLKSETDRESFVL 60
           VFAD+PD+NGT+KLIRE+R ATPN+VLPPGNYVVHVA GLVSAVR VSLK+ETDRESFVL
Sbjct: 131 VFADRPDENGTFKLIREDRNATPNIVLPPGNYVVHVAFGLVSAVRTVSLKAETDRESFVL 190

Query: 61  PAGGLRIEGRVGSSKIPANQISFAIYKGSQFDGSDRGPMVPNVAAGDVALLPEGTYYIVS 120
           PAGGLRIEGRVG+S+IP NQISFAIYKGSQF+  +R  +VPNVAAGDV LLPEGTYYI+S
Sbjct: 191 PAGGLRIEGRVGTSRIPQNQISFAIYKGSQFESGERASLVPNVAAGDVVLLPEGTYYIIS 250

Query: 121 NYGDANSVVRSDIRVAAGKLTDVTVTHRAAVITLKLVSERGGEALANTAWSVITPGGDVI 180
           NYGDANSVVRSDIRV AGKLTDVT+THRAAVITLKLVS+RGGEALANTAWSV+TPGGDVI
Sbjct: 251 NYGDANSVVRSDIRVQAGKLTDVTITHRAAVITLKLVSDRGGEALANTAWSVLTPGGDVI 310

Query: 181 KESIGAFPRVVLSEGEYRAIAKNEGKVFERPFNVVNGVDGEVEVVAR 227
           KESIGAFPRVVLSEGEYRAIAKNEGKV+ER FNVVNGVDGEVEVVAR
Sbjct: 311 KESIGAFPRVVLSEGEYRAIAKNEGKVYERGFNVVNGVDGEVEVVAR 357


>ref|YP_001241109.1| hypothetical protein BBta_5211 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37203.1| hypothetical protein BBta_5211 [Bradyrhizobium sp. BTAi1]
          Length = 284

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/227 (86%), Positives = 218/227 (96%)

Query: 1   VFADKPDDNGTYKLIREERGATPNVVLPPGNYVVHVALGLVSAVRAVSLKSETDRESFVL 60
           VFAD+PD++G +K++RE+RGATPN+VLPPGNYVVHVALGLVSAVRAV+LK+ETDRESFVL
Sbjct: 58  VFADRPDESGAFKMLREDRGATPNIVLPPGNYVVHVALGLVSAVRAVNLKAETDRESFVL 117

Query: 61  PAGGLRIEGRVGSSKIPANQISFAIYKGSQFDGSDRGPMVPNVAAGDVALLPEGTYYIVS 120
           PAGGLR+EGRVG+SKIP NQISFAIYKGSQFDG +R P+VPNVAAGDV +LPEGTYYIVS
Sbjct: 118 PAGGLRLEGRVGTSKIPPNQISFAIYKGSQFDGRERAPIVPNVAAGDVLMLPEGTYYIVS 177

Query: 121 NYGDANSVVRSDIRVAAGKLTDVTVTHRAAVITLKLVSERGGEALANTAWSVITPGGDVI 180
           NYGDANSVVRSDIRV A KLTDVTVTHRAAVITLKLVS++GGEALANTAWSVI PGGDVI
Sbjct: 178 NYGDANSVVRSDIRVQASKLTDVTVTHRAAVITLKLVSDKGGEALANTAWSVINPGGDVI 237

Query: 181 KESIGAFPRVVLSEGEYRAIAKNEGKVFERPFNVVNGVDGEVEVVAR 227
           KESIGAFP+VVLSEG+YRAIAKNEGKVFER F+VVNGVDGEVEV+AR
Sbjct: 238 KESIGAFPKVVLSEGDYRAIAKNEGKVFERSFSVVNGVDGEVEVLAR 284


>ref|YP_001205007.1| hypothetical protein BRADO2963 [Bradyrhizobium sp. ORS 278]
 emb|CAL76770.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 249

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/227 (84%), Positives = 216/227 (95%)

Query: 1   VFADKPDDNGTYKLIREERGATPNVVLPPGNYVVHVALGLVSAVRAVSLKSETDRESFVL 60
           VFAD+PD+ GT+K++RE+RG TPN+VLPPGNYVVHVALGLVSAVR V+LK+ETDRESF+L
Sbjct: 23  VFADRPDETGTFKMLREDRGPTPNIVLPPGNYVVHVALGLVSAVRTVNLKAETDRESFLL 82

Query: 61  PAGGLRIEGRVGSSKIPANQISFAIYKGSQFDGSDRGPMVPNVAAGDVALLPEGTYYIVS 120
           PAGGLR+EGRVGS+KIP NQISFAIYKGSQFDG +R P+VPNVAAGD+ +LPEGTYYIVS
Sbjct: 83  PAGGLRLEGRVGSTKIPQNQISFAIYKGSQFDGRERAPIVPNVAAGDILMLPEGTYYIVS 142

Query: 121 NYGDANSVVRSDIRVAAGKLTDVTVTHRAAVITLKLVSERGGEALANTAWSVITPGGDVI 180
           NYGDAN+VVRSDIRV A KLTDVTVTHRAAVITLKLVS++GGEALANTAWSVI PGGDVI
Sbjct: 143 NYGDANAVVRSDIRVQASKLTDVTVTHRAAVITLKLVSDKGGEALANTAWSVINPGGDVI 202

Query: 181 KESIGAFPRVVLSEGEYRAIAKNEGKVFERPFNVVNGVDGEVEVVAR 227
           KES+GAFP+VVLSEG+YRAIAKNEGKVFER F+VVNGVDGEVEV+AR
Sbjct: 203 KESVGAFPKVVLSEGDYRAIAKNEGKVFERSFSVVNGVDGEVEVLAR 249


>ref|YP_485773.1| FHA domain-containing protein [Rhodopseudomonas palustris HaA2]
 gb|ABD06862.1| FHA domain containing protein [Rhodopseudomonas palustris HaA2]
          Length = 353

 Score =  397 bits (1019), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/227 (85%), Positives = 214/227 (94%)

Query: 1   VFADKPDDNGTYKLIREERGATPNVVLPPGNYVVHVALGLVSAVRAVSLKSETDRESFVL 60
           V++D+PDD+G  KLIREE GATPN+VLPPGNYVVHVA GLVSAVR V+LK++TDRE+F+L
Sbjct: 127 VYSDRPDDSGAIKLIREEHGATPNIVLPPGNYVVHVAHGLVSAVRPVTLKTDTDREAFIL 186

Query: 61  PAGGLRIEGRVGSSKIPANQISFAIYKGSQFDGSDRGPMVPNVAAGDVALLPEGTYYIVS 120
           PAGGLRIEGRVG ++IP NQISF+IYKGSQF+ S R P+VPN AAGDVAL+PEGTYYIVS
Sbjct: 187 PAGGLRIEGRVGGTRIPQNQISFSIYKGSQFENSQRPPLVPNAAAGDVALVPEGTYYIVS 246

Query: 121 NYGDANSVVRSDIRVAAGKLTDVTVTHRAAVITLKLVSERGGEALANTAWSVITPGGDVI 180
           NYGDANSVVRSDIRV AGKLTDVTVTHRAAVITLKLVS+RGGEALANTAWSV+TPGGDVI
Sbjct: 247 NYGDANSVVRSDIRVTAGKLTDVTVTHRAAVITLKLVSDRGGEALANTAWSVLTPGGDVI 306

Query: 181 KESIGAFPRVVLSEGEYRAIAKNEGKVFERPFNVVNGVDGEVEVVAR 227
           KESIGAFP+VVLSEGEYRAIAKNEGKVFER FNVVNGVDGEVEV+AR
Sbjct: 307 KESIGAFPKVVLSEGEYRAIAKNEGKVFERGFNVVNGVDGEVEVLAR 353


>ref|YP_532987.1| hypothetical protein RPC_3126 [Rhodopseudomonas palustris BisB18]
 gb|ABD88668.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 355

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/227 (84%), Positives = 213/227 (93%)

Query: 1   VFADKPDDNGTYKLIREERGATPNVVLPPGNYVVHVALGLVSAVRAVSLKSETDRESFVL 60
           V++D+PD+ G +KL+RE+RGATPN+VLPPG+YVVHVA GLVSAVR V+LKSETDRESFVL
Sbjct: 129 VYSDRPDETGAFKLVREDRGATPNIVLPPGSYVVHVAHGLVSAVRPVTLKSETDRESFVL 188

Query: 61  PAGGLRIEGRVGSSKIPANQISFAIYKGSQFDGSDRGPMVPNVAAGDVALLPEGTYYIVS 120
           PAGGLRIEGRVGSSKIP NQISF+IYKGSQF+  +R P++PNVAAGDV LL EGTYYI+S
Sbjct: 189 PAGGLRIEGRVGSSKIPQNQISFSIYKGSQFEVGERAPLLPNVAAGDVVLLQEGTYYIIS 248

Query: 121 NYGDANSVVRSDIRVAAGKLTDVTVTHRAAVITLKLVSERGGEALANTAWSVITPGGDVI 180
           NYGDANSVVRSDIRV AGKLTDV +THRAAVITLKLV ++GGEALANTAWSVITPGGDVI
Sbjct: 249 NYGDANSVVRSDIRVQAGKLTDVIITHRAAVITLKLVGDKGGEALANTAWSVITPGGDVI 308

Query: 181 KESIGAFPRVVLSEGEYRAIAKNEGKVFERPFNVVNGVDGEVEVVAR 227
           KESIGAFPRVVLSEGEYRAIAKNEGKVFER FNVVNGVDGE+EV+AR
Sbjct: 309 KESIGAFPRVVLSEGEYRAIAKNEGKVFERAFNVVNGVDGEIEVIAR 355