BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0041.p (691 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_570388.1| GGDEF domain-containing protein [Rhodopseudomon... 634 e-179 ref|YP_532986.1| diguanylate cyclase/phosphodiesterase [Rhodopse... 615 e-174 ref|NP_772182.1| hypothetical protein bll5542 [Bradyrhizobium ja... 607 e-171 ref|YP_485778.1| diguanylate cyclase/phosphodiesterase [Rhodopse... 605 e-171 ref|YP_781254.1| PAS/PAC sensor-containing diguanylate cyclase/p... 603 e-170 >ref|YP_570388.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gb|ABE40487.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB5] Length = 823 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 308/454 (67%), Positives = 359/454 (79%) Query: 10 SAKFNSEMFADVPVLQRKWQAAVRPGERLPHYEDVMLGSLGRLADHIVLLRSVDGMLSVS 69 S +++ AD+ +LQRKWQAAV+PG+ LP YE+VMLGSLGRLADH+VLL+ G VS Sbjct: 8 SETLTTQLAADLAILQRKWQAAVQPGQTLPSYEEVMLGSLGRLADHMVLLQLSGGEPGVS 67 Query: 70 HAGRYVQTWLNDERWDIPLSALPPDCATALTEAAANARENCRPYLASAHCVRDGLVRTFD 129 GRYVQ WL DERWDI L ALPPDCATAL +AA+ A++N RPYL AH VRDG+V+ + Sbjct: 68 RTGRYVQQWLGDERWDISLDALPPDCATALMQAASGAQQNLRPYLGMAHFVRDGIVQKYV 127 Query: 130 VLALPTRSRWGGILVGVYVNERNAQYNLLDTIFSAADEGVLSLAAIRDARGEPADFQIVH 189 +LALPT SRWGG L+GVYVNE +YNLLD IFS+ D+G++SL AIRDA P DFQIVH Sbjct: 128 LLALPTSSRWGGTLIGVYVNEDGFRYNLLDAIFSSTDDGIVSLTAIRDADDRPFDFQIVH 187 Query: 190 LNQGAARLLMQPATDLLWCRLSAGGNPLAAPAVMSRLRGFVGGGPGGQFEIDSGDRCLRL 249 LN GA+ LL QP L W RLSAG + L PAV++RL V G IDS DR L L Sbjct: 188 LNDGASALLRQPVEMLQWSRLSAGRHMLCEPAVVARLLALVDKGGQDTIAIDSDDRNLSL 247 Query: 250 GVTAFGDMLSLTVSDVTALKQRELSFRLLFENNPMPMWVFDAGTMEFLSVNDAAVQHYGY 309 G TAFGD++SLT+SD+T+LK+RE SFRLLF+ NPMPMWVFDA T EFLSVNDAAVQHYGY Sbjct: 248 GATAFGDIVSLTISDITSLKKREESFRLLFDGNPMPMWVFDATTTEFLSVNDAAVQHYGY 307 Query: 310 SREKFLGMTLRQIWPVDEWSVHSAALREIGDVYQSSRDWRHIRADGSEIHVLTFGRKVAF 369 R+ FL MTLR+IWP DEW+ HS AL +GD YQS +WRHI+ADGSEI VLTFGR+V F Sbjct: 308 DRDAFLRMTLREIWPRDEWASHSHALLHVGDSYQSGGNWRHIKADGSEIQVLTFGRRVVF 367 Query: 370 EGRDGYLVAVVDITERRAAEARIAHMAHHDGLTNLPNRDYYQERLREALERGRSGNKRVA 429 +GRDG+LV VVDITERR AEA+IAHMAHHDGLTNLPNR YQERL++ALE+GR+G RVA Sbjct: 368 DGRDGFLVVVVDITERRKAEAKIAHMAHHDGLTNLPNRALYQERLQQALEQGRAGGARVA 427 Query: 430 VMCIDLDLFKNVNDSFGHPMGDRLLKLXRVRDRA 463 V+CIDLDLFKNVNDSFGHPMGDRLL+ R RA Sbjct: 428 VLCIDLDLFKNVNDSFGHPMGDRLLRCVAERLRA 461 >ref|YP_532986.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] gb|ABD88667.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] Length = 823 Score = 615 bits (1586), Expect = e-174, Method: Compositional matrix adjust. Identities = 302/455 (66%), Positives = 363/455 (79%), Gaps = 2/455 (0%) Query: 8 QASAKFNSEMFADVPVLQRKWQAAVRPGERLPHYEDVMLGSLGRLADHIVLLRSVDGMLS 67 + S+KF++E F D+PVL+RKW+AA++PG+ LP YEDVMLGSLGRLADHIVLL+ L+ Sbjct: 6 KLSSKFDTEKFGDIPVLKRKWRAALKPGQTLPRYEDVMLGSLGRLADHIVLLKGEGASLA 65 Query: 68 VSHAGRYVQTWLNDERWDIPLSALPPDCATALTEAAANARENCRPYLASAHCVRDGLVRT 127 VS +GRY+Q WL + WD+PL LP DCATAL EAAA + +PYLA AHCVR G+VRT Sbjct: 66 VSRSGRYIQEWLGQDAWDVPLGDLPADCATALAEAAACGLQTGKPYLAVAHCVRAGMVRT 125 Query: 128 FDVLALPTRSRWGGILVGVYVNERNAQYNLLDTIFSAADEGVLSLAAIRDARGEPADFQI 187 +DV+ALPT SRWG L+GVYVNER AQYNLLD IFS+ D+G+LSLAAIR+A P DFQI Sbjct: 126 YDVVALPTASRWGEKLIGVYVNERGAQYNLLDAIFSSTDDGILSLAAIRNADNRPFDFQI 185 Query: 188 VHLNQGAARLLMQPATDLLWCRLSAGGNPLAAPAVMSRLRGFVGGGPGGQFEIDSGDRCL 247 VHLN+GA+RLL +P+T L W RL AGG+ L +P +++RL + G EID G + + Sbjct: 186 VHLNEGASRLLGEPSTALQWSRLRAGGHLLCSPMMVARLLNVISSGNSDVLEIDRGQQTI 245 Query: 248 RLGVTAFGDMLSLTVSDVTALKQRELSFRLLFENNPMPMWVFDAGTMEFLSVNDAAVQHY 307 RL TAFGD++SLTVSDVT+LK+RE SFRLLF+NNPMPMWVFDA T EFLSVNDAAVQHY Sbjct: 246 RLSATAFGDVVSLTVSDVTSLKKREDSFRLLFDNNPMPMWVFDAKTTEFLSVNDAAVQHY 305 Query: 308 GYSREKFLGMTLRQIWPVDEWSVHSAALREIGDVYQSSRDWRHIRADGSEIHVLTFGRKV 367 G+ RE FL M L+ IWP DE VH ++ ++GD + S R+WRH+RADGSEI VLTFGR+V Sbjct: 306 GFERESFLRMKLQDIWPEDEREVHLRSVLQVGDTHYSGRNWRHLRADGSEIEVLTFGRQV 365 Query: 368 AFEGRDGYLVAVVDITERRAAEARIAHMAHHDGLTNLPNRDYYQERLREALERGRSGNKR 427 AFEGRDG+LVAVVDITERR AEA+IA MAHHDGLTNLPNR YQE L +ALE R N + Sbjct: 366 AFEGRDGFLVAVVDITERRKAEAKIAFMAHHDGLTNLPNRGSYQEHLHQALELSRRCNSK 425 Query: 428 VAVMCIDLDLFKNVNDSFGHPMGDRLLKLXRVRDR 462 VAV+C+DLDLFKNVNDSFGHP GDRLL+ +V DR Sbjct: 426 VAVLCVDLDLFKNVNDSFGHPTGDRLLQ--KVADR 458 >ref|NP_772182.1| hypothetical protein bll5542 [Bradyrhizobium japonicum USDA 110] dbj|BAC50807.1| bll5542 [Bradyrhizobium japonicum USDA 110] Length = 835 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 304/441 (68%), Positives = 355/441 (80%), Gaps = 3/441 (0%) Query: 15 SEMFADVPVLQRKWQAAVRPGERLPHYEDVMLGSLGRLADHIVLLRSVDGMLSVSHAGRY 74 +EMF D+PVLQRKW+AA++PGERLP YEDVMLGSLGRLADHI LL++ DG L +S +GRY Sbjct: 28 AEMFDDIPVLQRKWRAALKPGERLPRYEDVMLGSLGRLADHIALLKN-DGALELSRSGRY 86 Query: 75 VQTWLNDERWDIPLSALPPDCATALTEAAANARENCRPYLASAHCVRDGLVRTFDVLALP 134 VQ WL +ERWDIP++ L PDCATAL+EAAA+A N RP+ ASAHCVRDG+VRT+DVLALP Sbjct: 87 VQKWLGEERWDIPVAELSPDCATALSEAAASALANGRPHQASAHCVRDGMVRTYDVLALP 146 Query: 135 TRSRWGGILVGVYVNERNAQYNLLDTIFSAADEGVLSLAAIRDARGEPADFQIVHLNQGA 194 T SRWG LVG YVNER QYNLLD IF++ D+ V+SLA +RDA G+P D QIVH NQ A Sbjct: 147 TASRWGATLVGAYVNERGTQYNLLDAIFASTDDAVISLATLRDAGGKPFDLQIVHHNQSA 206 Query: 195 ARLLMQPATDLLWCRLSAGGNPLAAPAVMSRLRGFVGGGPGGQFEIDSGDRCLRLGVTAF 254 A LL + LLW R+ G LAA +M L V GG G Q EI+ R LRL TAF Sbjct: 207 ATLLKVASAGLLWRRIGEGNTLLAASDIMEFLLKAVRGGRGEQLEIEHDGRHLRLSATAF 266 Query: 255 GDMLSLTVSDVTALKQRELSFRLLFENNPMPMWVFDAGTMEFLSVNDAAVQHYGYSREKF 314 D+LSLT+SDVTALK+R+ SFRLLF+NNPMPMWVFDA T +FL VNDAAVQHYGYSR F Sbjct: 267 ADVLSLTISDVTALKRRDASFRLLFDNNPMPMWVFDAETKQFLGVNDAAVQHYGYSRAAF 326 Query: 315 LGMTLRQIWPVDEWSVHSAALREIGDVYQSSRDWRHIRADGSEIHVLTFGRKVAFEGRDG 374 L M L +IWP DEW H+ AL +GD Y SSR+WRH+RADGSEI VLTFGR+VAF+ RDG Sbjct: 327 LRMKLHEIWPEDEWDSHAEALDRVGDTYHSSRNWRHLRADGSEIEVLTFGRRVAFDDRDG 386 Query: 375 YLVAVVDITERRAAEARIAHMAHHDGLTNLPNRDYYQERLREALERGRSGNKRVAVMCID 434 YLVAVVDITERR AEARIAHMAHHDGLT+LPNR+Y+Q+RL++AL+ ++G KRV V+ ID Sbjct: 387 YLVAVVDITERRKAEARIAHMAHHDGLTDLPNREYFQQRLKQALD--QAGGKRVGVLYID 444 Query: 435 LDLFKNVNDSFGHPMGDRLLK 455 LDLFKN+NDSFGHP GDRLLK Sbjct: 445 LDLFKNINDSFGHPAGDRLLK 465 >ref|YP_485778.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] gb|ABD06867.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] Length = 818 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 291/452 (64%), Positives = 349/452 (77%) Query: 12 KFNSEMFADVPVLQRKWQAAVRPGERLPHYEDVMLGSLGRLADHIVLLRSVDGMLSVSHA 71 K S++ AD+ VLQRKW AAV+ G+ LP YE+VMLGSLGRLAD++ LL V+ Sbjct: 5 KLASQLSADLAVLQRKWHAAVQSGQALPSYEEVMLGSLGRLADNMALLELSVARPGVTRT 64 Query: 72 GRYVQTWLNDERWDIPLSALPPDCATALTEAAANARENCRPYLASAHCVRDGLVRTFDVL 131 GRYVQ WL DERWDIPL L PDCA AL + A++A +N RPYL++AH VRDG+V+ + +L Sbjct: 65 GRYVQQWLGDERWDIPLDTLSPDCAMALVQVASSALQNKRPYLSTAHFVRDGIVQKYVLL 124 Query: 132 ALPTRSRWGGILVGVYVNERNAQYNLLDTIFSAADEGVLSLAAIRDARGEPADFQIVHLN 191 ALPT SRWG LVGVYVNE +YNLLD IFS+ D+G++SL AIR + G P DFQIVHLN Sbjct: 125 ALPTASRWGNTLVGVYVNEDGLRYNLLDAIFSSTDDGIVSLTAIRGSDGRPFDFQIVHLN 184 Query: 192 QGAARLLMQPATDLLWCRLSAGGNPLAAPAVMSRLRGFVGGGPGGQFEIDSGDRCLRLGV 251 +GA+ LL Q L W LS G N L PAVM+RL V G ID+ +R L LGV Sbjct: 185 EGASALLQQSVNALQWSLLSGGRNFLCEPAVMARLLALVDSGGQDSLSIDTDNRNLSLGV 244 Query: 252 TAFGDMLSLTVSDVTALKQRELSFRLLFENNPMPMWVFDAGTMEFLSVNDAAVQHYGYSR 311 TAFGD++SLT+SD+T+LK+RE SFRLLF+ NPMPMWVFDA T EFL+VNDAAVQHYGY R Sbjct: 245 TAFGDIVSLTISDITSLKKREESFRLLFDGNPMPMWVFDAATTEFLNVNDAAVQHYGYDR 304 Query: 312 EKFLGMTLRQIWPVDEWSVHSAALREIGDVYQSSRDWRHIRADGSEIHVLTFGRKVAFEG 371 + FL MTLR+IWP DEW+ HS AL ++GD YQS +WRH++ADG+EI V+TFGR+V F Sbjct: 305 DAFLRMTLREIWPRDEWAAHSLALLQVGDSYQSGGNWRHLKADGTEIQVMTFGRRVVFND 364 Query: 372 RDGYLVAVVDITERRAAEARIAHMAHHDGLTNLPNRDYYQERLREALERGRSGNKRVAVM 431 R+G+LVAVVD+TERR AEA+IAHMAHHDGLTNLPNR YQERL++ALE+ R G RVAV+ Sbjct: 365 REGFLVAVVDVTERRKAEAKIAHMAHHDGLTNLPNRALYQERLQQALEQARGGGGRVAVL 424 Query: 432 CIDLDLFKNVNDSFGHPMGDRLLKLXRVRDRA 463 CIDLDLFKNVNDSFGHPMGDRLL+ R RA Sbjct: 425 CIDLDLFKNVNDSFGHPMGDRLLRCVADRLRA 456 >ref|YP_781254.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] gb|ABJ06274.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] Length = 834 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 296/449 (65%), Positives = 349/449 (77%), Gaps = 1/449 (0%) Query: 14 NSEMFADVPVLQRKWQAAVRPGERLPHYEDVMLGSLGRLADHIVLLRSVDGMLSVSHAGR 73 +++ D+ VL+RKWQAAV PG LP YE+VMLGSLGRLADHI LLR +L VS GR Sbjct: 24 KAQLTGDLTVLRRKWQAAVLPGHNLPGYEEVMLGSLGRLADHIALLRVDGDVLEVSRTGR 83 Query: 74 YVQTWLNDERWDIPLSALPPDCATALTEAAANARENCRPYLASAHCVRDGLVRTFDVLAL 133 YVQ W+ DERW+IPLSALPPDCATAL +AAA A +N +P+ A A+CVRDG+V+ +D+LAL Sbjct: 84 YVQAWIGDERWNIPLSALPPDCATALEQAAAGALKNRQPHQAVANCVRDGIVQKYDLLAL 143 Query: 134 PTRSRWGGILVGVYVNERNAQYNLLDTIFSAADEGVLSLAAIRDARGEPADFQIVHLNQG 193 PT SRWGG L+GVYVNE+ +YNLLD IF+A D+G+LSLAA+RDA P DFQIVHLNQG Sbjct: 144 PTASRWGGTLIGVYVNEQGGRYNLLDAIFAATDDGILSLAAVRDANHRPVDFQIVHLNQG 203 Query: 194 AARLLMQPATDLLWCRLSAGGNPLAAPAVMSRLRGFVGGGPGGQFEIDSGDRCLRLGVTA 253 AARLL QPA L W +L G + L V+ L VGGG + EIDS DR L L TA Sbjct: 204 AARLLGQPAAALQWSQLRGGAHLLCTAEVIDWLLQRVGGGDREELEIDSDDRNLSLSATA 263 Query: 254 FGDMLSLTVSDVTALKQRELSFRLLFENNPMPMWVFDAGTMEFLSVNDAAVQHYGYSREK 313 F DMLSLT+SDVT+LK+RE SFRLLF+NNPMPMWVFDA T FL VNDAAV+HYG+SR Sbjct: 264 FEDMLSLTISDVTSLKRREASFRLLFDNNPMPMWVFDAATTRFLKVNDAAVRHYGFSRSA 323 Query: 314 FLGMTLRQIWPVDEWSVHSAALREIGDVYQSSRDWRHIRADGSEIHVLTFGRKVAFEGRD 373 FLGM L +IWP DE H AL++ GD Y S R+WRH++ADGSEI ++ FGR+VAFE D Sbjct: 324 FLGMKLPEIWPADEREAHLHALQQAGDNYLSDRNWRHLKADGSEIEIIAFGRRVAFERSD 383 Query: 374 GYLVAVVDITERRAAEARIAHMAHHDGLTNLPNRDYYQERLREALERGRSGNKRVAVMCI 433 G+LVA+VD+TERR AEARIAHMAHHDGLTNLPNR +YQERL+ ALE R VAV+C+ Sbjct: 384 GFLVAIVDVTERRKAEARIAHMAHHDGLTNLPNRSFYQERLQHALE-ARPAECHVAVLCV 442 Query: 434 DLDLFKNVNDSFGHPMGDRLLKLXRVRDR 462 DLDLFKNVNDSFGHP+GDRLL+L R R Sbjct: 443 DLDLFKNVNDSFGHPVGDRLLQLVAERLR 471