BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0040.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772182.1| hypothetical protein bll5542 [Bradyrhizobium ja...   208   2e-52
ref|YP_001241105.1| diguanylate cyclase/phosphodiesterase [Brady...   206   1e-51
ref|YP_781254.1| PAS/PAC sensor-containing diguanylate cyclase/p...   205   2e-51
ref|YP_001205012.1| hypothetical protein BRADO2968 [Bradyrhizobi...   205   2e-51
ref|YP_532986.1| diguanylate cyclase/phosphodiesterase [Rhodopse...   204   3e-51

>ref|NP_772182.1| hypothetical protein bll5542 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50807.1| bll5542 [Bradyrhizobium japonicum USDA 110]
          Length = 835

 Score =  208 bits (530), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/116 (87%), Positives = 106/116 (91%)

Query: 1   LRELGVSISMDDFGTGYSSLSYLRSFPFDKIKIDRSFVKDLARRSDCLAIVRAISGLGRS 60
           LRE GV ISMDDFGTGYSSLSYLRSFPFDKIKIDRSFVKDLA+R DC+AIVRAISGLGRS
Sbjct: 720 LREFGVGISMDDFGTGYSSLSYLRSFPFDKIKIDRSFVKDLAQRPDCVAIVRAISGLGRS 779

Query: 61  LKITTTAEGVETTDQLDWLRAEGCNEVQGFLFSAARPAGEIAALLSGFAERASKAA 116
           L ITTTAEGVET DQLDWLRAEGCNEVQGFLFSAARPA EI  LL+ F +RAS+AA
Sbjct: 780 LNITTTAEGVETEDQLDWLRAEGCNEVQGFLFSAARPAAEIEKLLADFGQRASRAA 835


>ref|YP_001241105.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gb|ABQ37199.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 822

 Score =  206 bits (523), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 100/116 (86%), Positives = 108/116 (93%)

Query: 1   LRELGVSISMDDFGTGYSSLSYLRSFPFDKIKIDRSFVKDLARRSDCLAIVRAISGLGRS 60
           LR+LGV ISMDDFGTGYSSLSYLRSFPFDKIKIDRSFVKDLA+RSDCLAIVRAISGLGRS
Sbjct: 707 LRQLGVRISMDDFGTGYSSLSYLRSFPFDKIKIDRSFVKDLAQRSDCLAIVRAISGLGRS 766

Query: 61  LKITTTAEGVETTDQLDWLRAEGCNEVQGFLFSAARPAGEIAALLSGFAERASKAA 116
           L I TTAEGVET++QLDWLRAEGCN+VQG+LFSAARPA EIA LL+ F  R+SKAA
Sbjct: 767 LNIITTAEGVETSEQLDWLRAEGCNQVQGYLFSAARPAAEIAGLLARFGARSSKAA 822


>ref|YP_781254.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris BisA53]
 gb|ABJ06274.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
          Length = 834

 Score =  205 bits (522), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/116 (85%), Positives = 107/116 (92%)

Query: 1   LRELGVSISMDDFGTGYSSLSYLRSFPFDKIKIDRSFVKDLARRSDCLAIVRAISGLGRS 60
           +R+LGV ISMDDFGTGYSSLSYLRSFPFDKIKIDRSFV+DLA+R DCLAIVRAI+GLGRS
Sbjct: 719 MRDLGVRISMDDFGTGYSSLSYLRSFPFDKIKIDRSFVQDLAQRPDCLAIVRAIAGLGRS 778

Query: 61  LKITTTAEGVETTDQLDWLRAEGCNEVQGFLFSAARPAGEIAALLSGFAERASKAA 116
           L ITTTAEGVET  QLDWLR EGCNEVQGFLFS ARPAGEIAAL++ F +RASKAA
Sbjct: 779 LNITTTAEGVETQAQLDWLREEGCNEVQGFLFSPARPAGEIAALIARFGDRASKAA 834


>ref|YP_001205012.1| hypothetical protein BRADO2968 [Bradyrhizobium sp. ORS 278]
 emb|CAL76775.1| Conserved hypothetical protein; putative diguanylate cyclase
           (GGDEF)/phosphodiesterase (EAL) with PAS domains
           [Bradyrhizobium sp. ORS 278]
          Length = 838

 Score =  205 bits (522), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 100/116 (86%), Positives = 107/116 (92%)

Query: 1   LRELGVSISMDDFGTGYSSLSYLRSFPFDKIKIDRSFVKDLARRSDCLAIVRAISGLGRS 60
           LR LG+ ISMDDFGTGYSSLSYLRSFPFDKIKIDRSFVKDLA+RSDCLAIVRAISGLG+S
Sbjct: 723 LRALGIRISMDDFGTGYSSLSYLRSFPFDKIKIDRSFVKDLAQRSDCLAIVRAISGLGKS 782

Query: 61  LKITTTAEGVETTDQLDWLRAEGCNEVQGFLFSAARPAGEIAALLSGFAERASKAA 116
           L ITTTAEGVET+DQLDWLRAEGCN+VQGFLFSAARPA EIA LL+ F  R S+AA
Sbjct: 783 LNITTTAEGVETSDQLDWLRAEGCNQVQGFLFSAARPASEIAGLLARFGARESRAA 838


>ref|YP_532986.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gb|ABD88667.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 823

 Score =  204 bits (520), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 102/116 (87%), Positives = 105/116 (90%)

Query: 1   LRELGVSISMDDFGTGYSSLSYLRSFPFDKIKIDRSFVKDLARRSDCLAIVRAISGLGRS 60
           LRELGV ISMDDFGTGYSSLSYLRSFPFDKIKIDRSFVKDLA R DCLAIVRAISGLGRS
Sbjct: 708 LRELGVRISMDDFGTGYSSLSYLRSFPFDKIKIDRSFVKDLADRPDCLAIVRAISGLGRS 767

Query: 61  LKITTTAEGVETTDQLDWLRAEGCNEVQGFLFSAARPAGEIAALLSGFAERASKAA 116
           L ITTTAEGVET DQLDWLRAEGCNEVQG+LFSAARP+GEI  LL  F  RAS+AA
Sbjct: 768 LNITTTAEGVETLDQLDWLRAEGCNEVQGYLFSAARPSGEINDLLLRFGARASEAA 823