BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0033.p (331 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772164.1| hypothetical protein bll5524 [Bradyrhizobium ja... 414 e-113 ref|YP_001241085.1| hypothetical protein BBta_5186 [Bradyrhizobi... 373 e-101 ref|YP_532977.1| hypothetical protein RPC_3116 [Rhodopseudomonas... 369 e-100 ref|YP_570375.1| hypothetical protein RPD_3250 [Rhodopseudomonas... 365 5e-99 ref|YP_576932.1| hypothetical protein Nham_1655 [Nitrobacter ham... 362 4e-98 >ref|NP_772164.1| hypothetical protein bll5524 [Bradyrhizobium japonicum USDA 110] dbj|BAC50789.1| bll5524 [Bradyrhizobium japonicum USDA 110] Length = 286 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 208/291 (71%), Positives = 235/291 (80%), Gaps = 9/291 (3%) Query: 36 LTGAVALCFAASGTAAMAGGSAQANSTLEERKLPMKFSWIACQPNCRGWVSAVGIITADS 95 + GA A A +G A G A A + LEERKLPMKFSW+AC+PNCRGWVSAVGIITAD+ Sbjct: 1 MLGAAAFGIALTGAVATTGTKAHAGAALEERKLPMKFSWVACEPNCRGWVSAVGIITADT 60 Query: 96 PREFDEFARGRQLNGATIVLDSSGGSVNDAIALGRRFRGLGVLTTVGTSVANQAAQ-GRA 154 P++F+EF+RGRQL GAT+VLDSSGGSVNDAI LGRRFR LG+LTTVG SV N+ Q R Sbjct: 61 PKDFEEFSRGRQLGGATVVLDSSGGSVNDAITLGRRFRNLGLLTTVGISVQNRGGQSARP 120 Query: 155 SVLPDAYCESMCVFLLLSGKTRYVPPAAHVRVHQIWMGDRADDAKAASYTAQDLMIVERD 214 +V P+AYCESMCVFLLL+GK RYVP AAHVRVHQIWMGDRADDAKAASY+AQDLMIVERD Sbjct: 121 AVAPEAYCESMCVFLLLAGKKRYVPDAAHVRVHQIWMGDRADDAKAASYSAQDLMIVERD 180 Query: 215 IGRLAKYTFDMGGAGDLLALSLSVPPWEDLHELSAAELRLTNLITTDAVADVLPRQDNSK 274 IGRLAKYTFDMGGAGDLL+L+LSVPPWEDLHEL EL+LTNL+TTD VADVLP D + Sbjct: 181 IGRLAKYTFDMGGAGDLLSLALSVPPWEDLHELDTGELKLTNLVTTDLVADVLPHVDVT- 239 Query: 275 DNAIPVAEAKPKNNDRFVSSTMEGEAPPAARATKTAEAVVPTGGNAAPAPA 325 A +AE PK RF +E E P A++TKTAEAVVPTGG A P+ A Sbjct: 240 --APAMAELAPKTQARF---GVEPEQP--AKSTKTAEAVVPTGGVATPSAA 283 >ref|YP_001241085.1| hypothetical protein BBta_5186 [Bradyrhizobium sp. BTAi1] gb|ABQ37179.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 301 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 192/308 (62%), Positives = 228/308 (74%), Gaps = 19/308 (6%) Query: 23 LRLVKSLSLRSWALTGAVALCFAASGTAAMAGGSAQANSTLEERKLPMKFSWIACQPNCR 82 ++L++S +R W L G AL G + SA+A LEERKLPM+F W+AC+PNC Sbjct: 3 VKLLRSREMR-WMLLGVAALGTVLGGAITVMSNSARAGGALEERKLPMRFEWVACEPNC- 60 Query: 83 GWVSAVGIITADSPREFDEFARGRQLNGATIVLDSSGGSVNDAIALGRRFRGLGVLTTVG 142 GWVSAVGI+T D+P++F+EFAR R L+GA++VLDSSGGSVNDAI LGRRFR L + TTVG Sbjct: 61 GWVSAVGIVTGDTPKDFEEFARERDLSGASLVLDSSGGSVNDAITLGRRFRALKLRTTVG 120 Query: 143 TSVANQAAQGRASVLPDAYCESMCVFLLLSGKTRYVPPAAHVRVHQIWMGDRADDAKAAS 202 T++ R V +AYCESMCVFLLL+G TRYVP AAHVRVHQIWMGDRADDAKAAS Sbjct: 121 TTLRPSRTNDRPRVASEAYCESMCVFLLLAGTTRYVPDAAHVRVHQIWMGDRADDAKAAS 180 Query: 203 YTAQDLMIVERDIGRLAKYTFDMGGAGDLLALSLSVPPWEDLHELSAAELRLTNLITTDA 262 YTAQDLMIVERDIGRLAKYTFDMGGAGDLL+L+L+VPPWEDLHELS AELRLTNL+TTD Sbjct: 181 YTAQDLMIVERDIGRLAKYTFDMGGAGDLLSLALNVPPWEDLHELSRAELRLTNLVTTDM 240 Query: 263 VADVLPRQDNSKDNAIPVAE--------AKPKNNDRFVSSTMEGEAPPAARATKTAEAVV 314 +ADVLP + +PVAE AK K DRF +T + A+ ++TAEA+ Sbjct: 241 IADVLPSK-----GTVPVAELAPKAPEKAKDKQQDRFPVATDRDK----AQLSRTAEALP 291 Query: 315 PTGGNAAP 322 P A P Sbjct: 292 PATVAATP 299 >ref|YP_532977.1| hypothetical protein RPC_3116 [Rhodopseudomonas palustris BisB18] gb|ABD88658.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 322 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 195/313 (62%), Positives = 241/313 (76%), Gaps = 8/313 (2%) Query: 13 ITKGLGEGTKLRLVKSLSLRSWALTGAVALCFAASGTAAMAGGSAQANSTLEERKLPMKF 72 + G G+G L+LV+SL AL A AL A + A G +AQA + LEERKLPM+F Sbjct: 4 LMTGAGKGPDLKLVRSLKFVGKALLCAGALRLALAFVTAAPGTAAQAAAQLEERKLPMRF 63 Query: 73 SWIACQPNCRGWVSAVGIITADSPREFDEFARGRQLNGATIVLDSSGGSVNDAIALGRRF 132 SW+AC+PNCRGW+SAVGI+T+D+P++FDEFARGRQL+GA +VLDSSGGSVNDAIA+GRR+ Sbjct: 64 SWVACEPNCRGWISAVGIVTSDTPKDFDEFARGRQLSGAAVVLDSSGGSVNDAIAVGRRW 123 Query: 133 RGLGVLTTVGTSVANQAAQG-RASVLPDAYCESMCVFLLLSGKTRYVPPAAHVRVHQIWM 191 R LG+ TTVG+++ A G +A++ P AYCESMCVFLLL+G RYVP AHVRVHQIWM Sbjct: 124 RKLGLRTTVGSTIQVPTASGPQAAIAPQAYCESMCVFLLLAGSVRYVPEGAHVRVHQIWM 183 Query: 192 GDRADDAKAASYTAQDLMIVERDIGRLAKYTFDMGGAGDLLALSLSVPPWEDLHELSAAE 251 GDRADDA+AASYTAQD+MIVERDIGRLAK+TFDMGG GDLL+L+L+VPPWE+LHELS E Sbjct: 184 GDRADDARAASYTAQDMMIVERDIGRLAKFTFDMGGTGDLLSLALNVPPWENLHELSRQE 243 Query: 252 LRLTNLITTDAVADVLPRQDNSKDNAIPVAEAKPKNNDRFVSSTMEGEA---PPAARA-- 306 L LTNLITT+AVA++LP D + A+ ++KP +R S A P AA+ Sbjct: 244 LVLTNLITTEAVAELLPPLDTAP-AAVAALKSKPL-QERVASEVPLAPAMLLPVAAKQAP 301 Query: 307 TKTAEAVVPTGGN 319 TKTA+A +PTGG Sbjct: 302 TKTADASLPTGGQ 314 >ref|YP_570375.1| hypothetical protein RPD_3250 [Rhodopseudomonas palustris BisB5] gb|ABE40474.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 299 Score = 365 bits (938), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 185/293 (63%), Positives = 227/293 (77%), Gaps = 11/293 (3%) Query: 36 LTGAVALCFAASGTAAMAGGSAQANSTLEERKLPMKFSWIACQPNCRGWVSAVGIITADS 95 LT VAL F G A+ AQA +LE+RKLPM+F+W+AC+PNC GWV+A+GI+TAD+ Sbjct: 14 LTRVVALGFVLIGAASGPTQLAQAGGSLEQRKLPMRFNWVACEPNCGGWVTAIGIVTADT 73 Query: 96 PREFDEFARGRQLNGATIVLDSSGGSVNDAIALGRRFRGLGVLTTVGTSVANQAAQG-RA 154 P++F++FAR R L+GA +VLDSSGGSVNDAI LGRR+R +G++TT+G SV ++ G R+ Sbjct: 74 PKDFEDFARSRSLDGAAVVLDSSGGSVNDAITLGRRWRKMGLMTTIGVSVQSRTPAGIRS 133 Query: 155 SVLPDAYCESMCVFLLLSGKTRYVPPAAHVRVHQIWMGDRADDAKAASYTAQDLMIVERD 214 S++P+AYCESMCVFLLLSGKTRYVP A VRVHQIWMGDRADDA+AASYTA DL I+ERD Sbjct: 134 SIVPEAYCESMCVFLLLSGKTRYVPDGARVRVHQIWMGDRADDARAASYTAHDLTIIERD 193 Query: 215 IGRLAKYTFDMGGAGDLLALSLSVPPWEDLHELSAAELRLTNLITTDAVADVLP-RQDNS 273 IGRLAKYTF+MGG G+LLAL+LSVPPWEDLHELS ELR NLITT A+AD+LP R D + Sbjct: 194 IGRLAKYTFEMGGTGELLALALSVPPWEDLHELSPQELRDANLITTQAIADLLPQRGDAA 253 Query: 274 KDNAIPVAEAKPKNNDRFVSSTMEGEAPPAARATKTAEAVVPTGGNAAPAPAP 326 + A+ KP DRF + P A +TKTAEA +PTGG A A +P Sbjct: 254 AASVAAAADPKPV-QDRFAQT-------PVA-STKTAEAALPTGGTAPAATSP 297 >ref|YP_576932.1| hypothetical protein Nham_1655 [Nitrobacter hamburgensis X14] gb|ABE62472.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 307 Score = 362 bits (929), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 191/310 (61%), Positives = 225/310 (72%), Gaps = 8/310 (2%) Query: 23 LRLVKSLSLRSWALTGAVALCFAASGTAAMAGGSAQANSTLEERKLPMKFSWIACQPNCR 82 +RL KS WAL A A FA AA AN+ LE RK PM+F+W AC+P+CR Sbjct: 1 MRLAKSSGSCGWALLCAAAFYFALPAFAATLDNPVSANAALEARKQPMRFTWTACEPHCR 60 Query: 83 GWVSAVGIITADSPREFDEFARGRQLNGATIVLDSSGGSVNDAIALGRRFRGLGVLTTVG 142 W++AVGI+TA++P+ FD+F GR + G T+VLDSSGGSVNDAIALGRR+R LG+ TTVG Sbjct: 61 SWINAVGIVTAETPKAFDDFTGGRDVAGMTVVLDSSGGSVNDAIALGRRWRALGLATTVG 120 Query: 143 TSVANQAAQG-RASVLPDAYCESMCVFLLLSGKTRYVPPAAHVRVHQIWMGDRADDAKAA 201 TSV + G RA+VLP+AYCESMCVF+LLSGKTRYVP AHVRVHQIWMGDRA+DA+AA Sbjct: 121 TSVVAKTVVGDRAAVLPEAYCESMCVFMLLSGKTRYVPERAHVRVHQIWMGDRAEDARAA 180 Query: 202 SYTAQDLMIVERDIGRLAKYTFDMGGAGDLLALSLSVPPWEDLHELSAAELRLTNLITTD 261 SY+AQDLMIVERDIGRLAKYTFDMGG GDLL L+LS+PPWEDLHELS ELR NL+TTD Sbjct: 181 SYSAQDLMIVERDIGRLAKYTFDMGGTGDLLHLALSIPPWEDLHELSPEELRAANLVTTD 240 Query: 262 AVADVLPRQDNSKDNAIPVAEAKPKN-NDRFVSSTME--GEAPPAARATKTAEAVVPTGG 318 VADVLP ++ P+A K DRF +S A ++ TKTAEA +P GG Sbjct: 241 RVADVLPGGGTTE---APIAGLVTKPVQDRFPASVTNAAAAAATTSQPTKTAEA-IPVGG 296 Query: 319 NAAPAPAPVQ 328 A AP Q Sbjct: 297 AATAAPTQHQ 306