BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0028.p (416 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002490264.1| cytochrome c class I [Methylobacterium nodul... 641 0.0 ref|YP_003066085.1| cytochrome C, exported protein [Methylobacte... 638 0.0 ref|YP_003069959.1| cytochrome C, exported protein [Methylobacte... 637 0.0 ref|NP_771122.1| alcohol dehydrogenase cytochrome C subunit [Bra... 630 e-178 ref|YP_001204329.1| putative cytochrome c [Bradyrhizobium sp. OR... 623 e-176 >ref|YP_002490264.1| cytochrome c class I [Methylobacterium nodulans ORS 2060] gb|ACL63097.1| cytochrome c class I [Methylobacterium nodulans ORS 2060] Length = 419 Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/413 (74%), Positives = 344/413 (83%), Gaps = 1/413 (0%) Query: 4 TLTGLLVGLMLALSPIGASAQQKAADPAVLAKGEYLARAGDCIACHTAREGMTFAGGLPM 63 L LL L+ + +A D LAKGEYLARAGDCIACHTA EG FAGG PM Sbjct: 8 VLPALLASLLCVSAAESQAAPAAQPDAEALAKGEYLARAGDCIACHTAPEGKPFAGGRPM 67 Query: 64 KTPFGTLYTSNITPDPQTGIGTWTSDQFYQMMHNGRFPDGGLVYPAMPFASYTKVTREDS 123 TPFGTL+TSNITPDP+TGIGTWT+DQFYQMMH GR PDGGL+YPAMPF SYTKVTR DS Sbjct: 68 ATPFGTLFTSNITPDPETGIGTWTADQFYQMMHTGRSPDGGLLYPAMPFGSYTKVTRADS 127 Query: 124 DAIYAYLRTVPPVRQLNKPHDLTFPFNNRSLILGWRTLFFREGEFKPDPTKSAEWNRGNY 183 DAIYA+L +VPPV+Q N+PHDL FP+NNR L+LGWRTLFFREGEFKPDP +SAEWNRG Y Sbjct: 128 DAIYAFLMSVPPVKQANRPHDLRFPYNNRQLVLGWRTLFFREGEFKPDPKQSAEWNRGAY 187 Query: 184 LVEGLGHCGMCHTPINALGGSKQSQAFEGGLIPMQNWYAPSLTSNKETGLGDWTIEEIVD 243 LVEGLGHCGMCHTPINALGGS +SQAF+GGLIPMQNWYAPSLTSN+E G+GDW+IEEI D Sbjct: 188 LVEGLGHCGMCHTPINALGGSSESQAFQGGLIPMQNWYAPSLTSNREAGVGDWSIEEISD 247 Query: 244 YLRKGVSAKGAVYGPMAEVVYNSLQYLNDDDARAMAVYLKGLAQGGPPEKASTSLPSAES 303 LR G+S +GAVYGPMAEV YNSLQYL +D RAMAVYLK L Q P ++++P+AES Sbjct: 248 LLRTGISRRGAVYGPMAEVTYNSLQYLTPEDTRAMAVYLKSLGQEVAP-PVTSNVPTAES 306 Query: 304 SLLLSFGKSIYDRDCASCHGAVGQGMPPDYPPLAGNQSIQMVSAVNPIRMVLNGGYPPGT 363 SLLLS GK++YD +CASCHGA GQG PP YPPLAGNQSIQM SAVN IRMVLNGGYPPGT Sbjct: 307 SLLLSLGKTVYDTNCASCHGAQGQGKPPHYPPLAGNQSIQMSSAVNAIRMVLNGGYPPGT 366 Query: 364 SGNPMPHGMPPFAQKLSDDEVAAVVTYIRTAWGNRGEPVSARQANELRAATLN 416 GN P+GMPPFAQ LSD+EVAAVVTYIRT WGN G V+A++AN+LR+A L+ Sbjct: 367 EGNSRPYGMPPFAQSLSDNEVAAVVTYIRTTWGNHGAAVTAQEANQLRSAPLD 419 >ref|YP_003066085.1| cytochrome C, exported protein [Methylobacterium extorquens DM4] emb|CAX22029.1| putative cytochrome c, putative exported protein [Methylobacterium extorquens DM4] Length = 418 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 303/388 (78%), Positives = 333/388 (85%), Gaps = 1/388 (0%) Query: 29 DPAVLAKGEYLARAGDCIACHTAREGMTFAGGLPMKTPFGTLYTSNITPDPQTGIGTWTS 88 D VLAKGEYLARAGDCIACHTA EG FAGG M TPFGTL+TSNITPDP+TGIG WT+ Sbjct: 32 DAGVLAKGEYLARAGDCIACHTAPEGKPFAGGRSMATPFGTLFTSNITPDPETGIGKWTA 91 Query: 89 DQFYQMMHNGRFPDGGLVYPAMPFASYTKVTREDSDAIYAYLRTVPPVRQLNKPHDLTFP 148 DQFYQMMH GR PDGGL+YPAMPF SYTKVTR DSDAIYAYL +VPPV Q N+PHDL FP Sbjct: 92 DQFYQMMHTGRSPDGGLLYPAMPFGSYTKVTRADSDAIYAYLMSVPPVGQANRPHDLRFP 151 Query: 149 FNNRSLILGWRTLFFREGEFKPDPTKSAEWNRGNYLVEGLGHCGMCHTPINALGGSKQSQ 208 +NNR LILGWRTLFFREGEFKPDP +S EWNRG YLVEGLGHCGMCHTPINALGG+ +SQ Sbjct: 152 YNNRQLILGWRTLFFREGEFKPDPKQSEEWNRGAYLVEGLGHCGMCHTPINALGGNSESQ 211 Query: 209 AFEGGLIPMQNWYAPSLTSNKETGLGDWTIEEIVDYLRKGVSAKGAVYGPMAEVVYNSLQ 268 AF+GGLIPMQNWYAPSLTSN+E G+GDWTIEEI D LR GVS +GAVYGPMAEV YNSLQ Sbjct: 212 AFQGGLIPMQNWYAPSLTSNREAGVGDWTIEEISDLLRTGVSRRGAVYGPMAEVTYNSLQ 271 Query: 269 YLNDDDARAMAVYLKGLAQGGPPEKASTSLPSAESSLLLSFGKSIYDRDCASCHGAVGQG 328 +L +D RAMAVYLK L Q PP ++ +P+AESSLLLS GK++YD CASCHGA GQG Sbjct: 272 HLTPEDTRAMAVYLKSLGQEVPP-PVTSRVPTAESSLLLSLGKTVYDGQCASCHGAQGQG 330 Query: 329 MPPDYPPLAGNQSIQMVSAVNPIRMVLNGGYPPGTSGNPMPHGMPPFAQKLSDDEVAAVV 388 PP YPPLAGNQSIQM SAVN IRMVLNGGYPPGT GNP P+GMPPFAQ LSD+EVAAVV Sbjct: 331 KPPHYPPLAGNQSIQMSSAVNAIRMVLNGGYPPGTQGNPRPYGMPPFAQSLSDNEVAAVV 390 Query: 389 TYIRTAWGNRGEPVSARQANELRAATLN 416 TYIRT WGN G V+A++AN+LR+A L+ Sbjct: 391 TYIRTTWGNHGAAVTAQEANQLRSAPLD 418 >ref|YP_003069959.1| cytochrome C, exported protein [Methylobacterium extorquens DM4] emb|CAX26134.1| putative cytochrome c, putative exported protein [Methylobacterium extorquens DM4] Length = 423 Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust. Identities = 303/388 (78%), Positives = 332/388 (85%), Gaps = 1/388 (0%) Query: 29 DPAVLAKGEYLARAGDCIACHTAREGMTFAGGLPMKTPFGTLYTSNITPDPQTGIGTWTS 88 D VLAKGEYLARAGDCIACHTA EG FAGG M TPFGTL+TSNITPDP+TGIG WT+ Sbjct: 37 DAGVLAKGEYLARAGDCIACHTAPEGKPFAGGRSMATPFGTLFTSNITPDPETGIGKWTA 96 Query: 89 DQFYQMMHNGRFPDGGLVYPAMPFASYTKVTREDSDAIYAYLRTVPPVRQLNKPHDLTFP 148 DQFYQMMH GR PDGGL+YPAMPF SYTKVTR DSDAIYAYL +VPPV Q N+PHDL FP Sbjct: 97 DQFYQMMHTGRSPDGGLLYPAMPFGSYTKVTRADSDAIYAYLMSVPPVGQANRPHDLRFP 156 Query: 149 FNNRSLILGWRTLFFREGEFKPDPTKSAEWNRGNYLVEGLGHCGMCHTPINALGGSKQSQ 208 +NNR LILGWRTLFFREGEFKPDP +S EWNRG YLVEGLGHCGMCHTPINALGG+ +SQ Sbjct: 157 YNNRQLILGWRTLFFREGEFKPDPKQSEEWNRGAYLVEGLGHCGMCHTPINALGGNSESQ 216 Query: 209 AFEGGLIPMQNWYAPSLTSNKETGLGDWTIEEIVDYLRKGVSAKGAVYGPMAEVVYNSLQ 268 AF+GGLIPMQNWYAPSLTSN+E G+GDWTIEEI D LR GVS +GAVYGPMAEV YNSLQ Sbjct: 217 AFQGGLIPMQNWYAPSLTSNREAGVGDWTIEEISDLLRTGVSRRGAVYGPMAEVTYNSLQ 276 Query: 269 YLNDDDARAMAVYLKGLAQGGPPEKASTSLPSAESSLLLSFGKSIYDRDCASCHGAVGQG 328 YL +D RAMAVYLK L Q PP ++ +P+AESSLLLS GK++YD CASCHGA GQG Sbjct: 277 YLTPEDTRAMAVYLKSLGQEVPP-PVTSRVPTAESSLLLSLGKTVYDGQCASCHGAQGQG 335 Query: 329 MPPDYPPLAGNQSIQMVSAVNPIRMVLNGGYPPGTSGNPMPHGMPPFAQKLSDDEVAAVV 388 PP YPPLAGNQSIQM AVN IRMVLNGGYPPGT GNP P+GMPPFAQ LSD+EVAAVV Sbjct: 336 KPPHYPPLAGNQSIQMSFAVNAIRMVLNGGYPPGTQGNPRPYGMPPFAQSLSDNEVAAVV 395 Query: 389 TYIRTAWGNRGEPVSARQANELRAATLN 416 TYIRT WGN G V+A++AN+LR+A L+ Sbjct: 396 TYIRTTWGNHGAAVTAQEANQLRSAPLD 423 >ref|NP_771122.1| alcohol dehydrogenase cytochrome C subunit [Bradyrhizobium japonicum USDA 110] dbj|BAC49747.1| bll4482 [Bradyrhizobium japonicum USDA 110] Length = 415 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 296/385 (76%), Positives = 344/385 (89%) Query: 32 VLAKGEYLARAGDCIACHTAREGMTFAGGLPMKTPFGTLYTSNITPDPQTGIGTWTSDQF 91 ++A+GEYLARAGDC ACHTA EG FAGG M TPFGTLYTSNITPDP+TGIG W++D F Sbjct: 31 IIARGEYLARAGDCTACHTAPEGRLFAGGRAMPTPFGTLYTSNITPDPETGIGKWSADDF 90 Query: 92 YQMMHNGRFPDGGLVYPAMPFASYTKVTREDSDAIYAYLRTVPPVRQLNKPHDLTFPFNN 151 Y+ MHNGRFPDGGL+YPAMPFASYTKVTR DSDAI+AYLR++PPV Q N+PH+L FP++N Sbjct: 91 YRTMHNGRFPDGGLIYPAMPFASYTKVTRADSDAIFAYLRSIPPVSQRNRPHELRFPYDN 150 Query: 152 RSLILGWRTLFFREGEFKPDPTKSAEWNRGNYLVEGLGHCGMCHTPINALGGSKQSQAFE 211 R LILGWRTLFF EGEFKPDPTKSAEWNRG YLVEGLGHCGMCH+PINALGG+ QS AF+ Sbjct: 151 RQLILGWRTLFFSEGEFKPDPTKSAEWNRGAYLVEGLGHCGMCHSPINALGGTSQSDAFK 210 Query: 212 GGLIPMQNWYAPSLTSNKETGLGDWTIEEIVDYLRKGVSAKGAVYGPMAEVVYNSLQYLN 271 GGLIPMQNWYAPSLTSN+E GLGDW+I++I D L+ GVSA+G VYGPMAEVV+NSLQYL+ Sbjct: 211 GGLIPMQNWYAPSLTSNREAGLGDWSIKDITDLLQTGVSARGVVYGPMAEVVHNSLQYLS 270 Query: 272 DDDARAMAVYLKGLAQGGPPEKASTSLPSAESSLLLSFGKSIYDRDCASCHGAVGQGMPP 331 D+D +AMAVYLKG+++ PP AS++LP+ ESSLL+S GK++YD++CASCHG G+G PP Sbjct: 271 DEDTKAMAVYLKGISEPSPPPPASSALPTTESSLLISLGKTVYDKNCASCHGTQGEGKPP 330 Query: 332 DYPPLAGNQSIQMVSAVNPIRMVLNGGYPPGTSGNPMPHGMPPFAQKLSDDEVAAVVTYI 391 +PPLA NQSI+M SAVNPIRMVLNGGYPPGT+GNPMP+GMPPFA LSD+EVAAVV+YI Sbjct: 331 HWPPLANNQSIEMQSAVNPIRMVLNGGYPPGTNGNPMPYGMPPFAGLLSDNEVAAVVSYI 390 Query: 392 RTAWGNRGEPVSARQANELRAATLN 416 RTAWGNRG PVSAR+ANELR+A LN Sbjct: 391 RTAWGNRGTPVSAREANELRSAPLN 415 >ref|YP_001204329.1| putative cytochrome c [Bradyrhizobium sp. ORS 278] emb|CAL76092.1| Putative cytochrome c [Bradyrhizobium sp. ORS 278] Length = 415 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 293/416 (70%), Positives = 342/416 (82%), Gaps = 1/416 (0%) Query: 1 MSRTLTGLLVGLMLALSPIGASAQQKAADPAVLAKGEYLARAGDCIACHTAREGMTFAGG 60 M R L+ L++ L + A + A ++A+GEYLARAGDCIACHTA EG FAGG Sbjct: 1 MLRCLS-LIIALPFTAPAVHAQSSAPNAGGDIVARGEYLARAGDCIACHTAPEGQPFAGG 59 Query: 61 LPMKTPFGTLYTSNITPDPQTGIGTWTSDQFYQMMHNGRFPDGGLVYPAMPFASYTKVTR 120 M TPFG LYTSNITPDP TGIG WT+D FY+ MH GRFPDGGL+YPAMPFASYTKVTR Sbjct: 60 RAMNTPFGALYTSNITPDPATGIGRWTADDFYKTMHTGRFPDGGLLYPAMPFASYTKVTR 119 Query: 121 EDSDAIYAYLRTVPPVRQLNKPHDLTFPFNNRSLILGWRTLFFREGEFKPDPTKSAEWNR 180 DSDAI+AYL+++P V Q N+ HDL FP++NR LILGWRTLFFREGEFK DP+KSAEWNR Sbjct: 120 ADSDAIFAYLKSIPAVNQKNRSHDLRFPYDNRELILGWRTLFFREGEFKSDPSKSAEWNR 179 Query: 181 GNYLVEGLGHCGMCHTPINALGGSKQSQAFEGGLIPMQNWYAPSLTSNKETGLGDWTIEE 240 G YLVEGLGHCGMCH+PINALGGS QS AF+GGLIPMQNWYAPSLTSN+E GLGDW+I++ Sbjct: 180 GAYLVEGLGHCGMCHSPINALGGSSQSDAFKGGLIPMQNWYAPSLTSNREAGLGDWSIKD 239 Query: 241 IVDYLRKGVSAKGAVYGPMAEVVYNSLQYLNDDDARAMAVYLKGLAQGGPPEKASTSLPS 300 I D L+ GVS +G V+GPMAEVV+NSLQYL D+DARAMA+YLKG+A+ +++LP Sbjct: 240 ITDLLQTGVSNRGVVFGPMAEVVHNSLQYLTDEDARAMAIYLKGIAEPSSKAPPASNLPG 299 Query: 301 AESSLLLSFGKSIYDRDCASCHGAVGQGMPPDYPPLAGNQSIQMVSAVNPIRMVLNGGYP 360 +ESSLL+S GK++YD CASCHG G+G PP +PPLA NQSI M SAVNPIRMVLNGGYP Sbjct: 300 SESSLLISLGKTVYDARCASCHGTNGEGRPPHWPPLANNQSINMTSAVNPIRMVLNGGYP 359 Query: 361 PGTSGNPMPHGMPPFAQKLSDDEVAAVVTYIRTAWGNRGEPVSARQANELRAATLN 416 PGT GNP P+GMPPFA LSD+E+AAVV+YIRT+WGNRG PVSAR ANELR+A L+ Sbjct: 360 PGTKGNPRPYGMPPFAGLLSDNEIAAVVSYIRTSWGNRGTPVSARDANELRSAPLD 415