BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0026.p (187 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003066083.1| cytochrome C oxidase subunit II [Methylobact... 274 5e-72 ref|YP_003069957.1| cytochrome C oxidase subunit II [Methylobact... 273 1e-71 ref|YP_002490266.1| cytochrome c oxidase subunit II [Methylobact... 272 2e-71 ref|YP_001204331.1| putative cytochrome c oxidase subunit II [Br... 265 3e-69 ref|YP_468521.1| cytochrome-c oxidase, subunit II protein [Rhizo... 263 7e-69 >ref|YP_003066083.1| cytochrome C oxidase subunit II [Methylobacterium extorquens DM4] emb|CAX22027.1| putative cytochrome c oxidase, subunit II (cbaB) [Methylobacterium extorquens DM4] Length = 187 Score = 274 bits (700), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 121/178 (67%), Positives = 150/178 (84%) Query: 10 GEAVAARIERRWATLSIVIVGVLVGMAAYIGIHQATMPQGRVETADPKTLHLSGEFVESN 69 G VA R+ERRWA LSI I+ +L G+AA+ GIH+ATMPQ RVET P+T+HL+GEFVESN Sbjct: 10 GARVAERVERRWAILSIGIIVLLAGLAAFAGIHRATMPQARVETVRPQTIHLAGEFVESN 69 Query: 70 LGSEMLADGSVTVRAIGQQYSFTPQCIVVPAETPITFRATSADVVHGFLIEGTNINTMLV 129 LGS + DGSVTVRA+GQQYSFTPQC+VVP +TP+ FRATS DV+HGFLI+ TN+NTMLV Sbjct: 70 LGSAVEPDGSVTVRAVGQQYSFTPQCMVVPTDTPVVFRATSPDVIHGFLIQKTNVNTMLV 129 Query: 130 PGYVTDLPVRFKAPGDHVMPCQEFCGIGHQGMWGKVKVVDKAAFRDMAAAKRRLTCVD 187 PGYV+++P RF PG+++MPCQE+CG+GH+GMW KVKVVDK F M +A RR+TCV+ Sbjct: 130 PGYVSEIPARFSKPGEYLMPCQEYCGVGHEGMWAKVKVVDKPEFLSMVSASRRVTCVE 187 >ref|YP_003069957.1| cytochrome C oxidase subunit II [Methylobacterium extorquens DM4] emb|CAX26132.1| putative Cytochrome c oxidase, subunit II [Methylobacterium extorquens DM4] Length = 187 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 120/178 (67%), Positives = 150/178 (84%) Query: 10 GEAVAARIERRWATLSIVIVGVLVGMAAYIGIHQATMPQGRVETADPKTLHLSGEFVESN 69 G VA R+ERRWA LSI I+ +L G+AA+ GIH+ATMPQ RVET P+T+HL+GEFVESN Sbjct: 10 GARVAERVERRWAILSIGIIVLLAGLAAFAGIHRATMPQARVETVRPQTIHLAGEFVESN 69 Query: 70 LGSEMLADGSVTVRAIGQQYSFTPQCIVVPAETPITFRATSADVVHGFLIEGTNINTMLV 129 LGS + DGSVTVRA+GQQYSFTPQC+VVP +TP+ FRATS DV+HGFLI+ TN+NTMLV Sbjct: 70 LGSAVEPDGSVTVRAVGQQYSFTPQCMVVPTDTPVVFRATSPDVIHGFLIQKTNVNTMLV 129 Query: 130 PGYVTDLPVRFKAPGDHVMPCQEFCGIGHQGMWGKVKVVDKAAFRDMAAAKRRLTCVD 187 PGYV+++P +F PG+++MPCQE+CG+GH+GMW KVKVVDK F M +A RR+TCV+ Sbjct: 130 PGYVSEIPAKFSKPGEYLMPCQEYCGVGHEGMWAKVKVVDKPEFLSMVSASRRVTCVE 187 >ref|YP_002490266.1| cytochrome c oxidase subunit II [Methylobacterium nodulans ORS 2060] gb|ACL63099.1| cytochrome c oxidase subunit II [Methylobacterium nodulans ORS 2060] Length = 187 Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 121/178 (67%), Positives = 148/178 (83%) Query: 10 GEAVAARIERRWATLSIVIVGVLVGMAAYIGIHQATMPQGRVETADPKTLHLSGEFVESN 69 G VA R+ERRWATLS+ I+ VL G AA+ GIHQATMPQ RVET P+TLHL+GEF++ N Sbjct: 10 GARVAERVERRWATLSVAIIIVLAGAAAFSGIHQATMPQARVETIQPQTLHLTGEFIKGN 69 Query: 70 LGSEMLADGSVTVRAIGQQYSFTPQCIVVPAETPITFRATSADVVHGFLIEGTNINTMLV 129 LGS + DGSVTVRA+GQQYSFTPQC+VVP TP+ FRATS DVVHGFLI+ TNINTMLV Sbjct: 70 LGSAVEPDGSVTVRAVGQQYSFTPQCMVVPTNTPVVFRATSPDVVHGFLIQNTNINTMLV 129 Query: 130 PGYVTDLPVRFKAPGDHVMPCQEFCGIGHQGMWGKVKVVDKAAFRDMAAAKRRLTCVD 187 PGYV+++P +F G+++MPCQE+CG+GH+GMW KVKVVDK+ F M +A RR+TCV+ Sbjct: 130 PGYVSEIPAKFSRTGEYLMPCQEYCGVGHEGMWAKVKVVDKSEFLSMISANRRVTCVE 187 >ref|YP_001204331.1| putative cytochrome c oxidase subunit II [Bradyrhizobium sp. ORS 278] emb|CAL76094.1| Putative cytochrome c oxidase subunit II [Bradyrhizobium sp. ORS 278] Length = 187 Score = 265 bits (676), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 119/175 (68%), Positives = 147/175 (84%) Query: 12 AVAARIERRWATLSIVIVGVLVGMAAYIGIHQATMPQGRVETADPKTLHLSGEFVESNLG 71 AVAAR ER WA ++IVI+ V+ G+AA G+H+ATMPQ +V+T DP LHLSGEF+ESNLG Sbjct: 11 AVAARTERNWAMIAIVIIVVMTGLAAGAGLHRATMPQSQVQTVDPSRLHLSGEFIESNLG 70 Query: 72 SEMLADGSVTVRAIGQQYSFTPQCIVVPAETPITFRATSADVVHGFLIEGTNINTMLVPG 131 +E+ ADG+VTVRAIGQQYSFTP CI+VP +TPIT RATSADVVHG L++GTNINTMLVPG Sbjct: 71 TELGADGAVTVRAIGQQYSFTPACILVPTDTPITLRATSADVVHGILVQGTNINTMLVPG 130 Query: 132 YVTDLPVRFKAPGDHVMPCQEFCGIGHQGMWGKVKVVDKAAFRDMAAAKRRLTCV 186 Y+++ P+RF GD++MPCQEFC GH+GMWGKV+V+DKAAF + A RL+CV Sbjct: 131 YISEQPMRFSRTGDYLMPCQEFCSFGHEGMWGKVRVIDKAAFAERAKGGGRLSCV 185 >ref|YP_468521.1| cytochrome-c oxidase, subunit II protein [Rhizobium etli CFN 42] gb|ABC89794.1| probable cytochrome-c oxidase, subunit II protein [Rhizobium etli CFN 42] Length = 185 Score = 263 bits (673), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 120/179 (67%), Positives = 143/179 (79%) Query: 7 HSLGEAVAARIERRWATLSIVIVGVLVGMAAYIGIHQATMPQGRVETADPKTLHLSGEFV 66 H G VA R+ERRWA ++++I+ L GMAA+ GIHQATMPQ VET DP T+HL GEFV Sbjct: 5 HDEGATVAERVERRWAAVAVLIIVFLAGMAAFAGIHQATMPQTTVETIDPTTIHLQGEFV 64 Query: 67 ESNLGSEMLADGSVTVRAIGQQYSFTPQCIVVPAETPITFRATSADVVHGFLIEGTNINT 126 ESNLGS + ADGSVTVRA+GQQYSF+P C++VP+ TPIT RATSADVVHG L++GTNINT Sbjct: 65 ESNLGSAVGADGSVTVRAVGQQYSFSPPCLLVPSRTPITIRATSADVVHGLLVQGTNINT 124 Query: 127 MLVPGYVTDLPVRFKAPGDHVMPCQEFCGIGHQGMWGKVKVVDKAAFRDMAAAKRRLTC 185 MLVPGYV+ F PG+H+MPCQEFC +GH+GMWGKVKVVDK F A KRR++C Sbjct: 125 MLVPGYVSVQKATFSEPGEHLMPCQEFCSVGHEGMWGKVKVVDKQQFLSELADKRRISC 183