BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0025.p (540 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001115325.1| cytochrome c oxidase, subunit I [Burkholderi... 837 0.0 ref|YP_001585717.1| cytochrome c oxidase subunit I [Burkholderia... 836 0.0 ref|ZP_02462982.1| cytochrome c oxidase, subunit I [Burkholderia... 831 0.0 ref|YP_001204332.1| putative cytochrome-c oxidase subunit I [Bra... 829 0.0 ref|ZP_02362348.1| cytochrome c oxidase, subunit I [Burkholderia... 829 0.0 >ref|YP_001115325.1| cytochrome c oxidase, subunit I [Burkholderia vietnamiensis G4] gb|ABO59070.1| cytochrome c oxidase, subunit I [Burkholderia vietnamiensis G4] Length = 541 Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/540 (75%), Positives = 471/540 (87%) Query: 1 LINKRLIAAHFWLAFIVFGVALVLGAWQMFVRSPLNAWHFNPEFYYRSVTAHGSAMGYVF 60 L N+RL+ AHFW AF FGVAL+LGAWQM+VRSPL+AW PE YYRSVTAHGS M YVF Sbjct: 2 LNNRRLVLAHFWFAFATFGVALLLGAWQMYVRSPLHAWLSAPELYYRSVTAHGSVMAYVF 61 Query: 61 PTLIAMGFGYAITEASLEKELVGRRWAWVGFFLVAVGAVVAMIPVSLGLASVLYTFYPPM 120 PTLIAMGFGYAITE SL + LVG+RWAW G++LVAVG++VAM+PVS+G ASVLYTFYPPM Sbjct: 62 PTLIAMGFGYAITELSLAQRLVGKRWAWAGWWLVAVGSIVAMVPVSMGRASVLYTFYPPM 121 Query: 121 VGNPFYYIGVVMVVVGSWIWVALMVTNFVIWKRENPGKPVPLAMYANVAGSLLWGWTAVG 180 +GNPFYYIGVV+VVVGSWIWVALM N +WK+ NPG PVPL M+ANVAGS LW WTAVG Sbjct: 122 IGNPFYYIGVVLVVVGSWIWVALMSVNLHVWKKANPGTPVPLPMFANVAGSYLWAWTAVG 181 Query: 181 AALEILFQILPVALGLKSTIDAGLARVFFSWTLHAIVYFWLIPTYIAYYTIFPRAIGGRL 240 AA+EILFQILPVALGLKSTID+GLARVFFSWTLHAIVYFWL+P YIAYYT+ PRA+GGRL Sbjct: 182 AAIEILFQILPVALGLKSTIDSGLARVFFSWTLHAIVYFWLMPAYIAYYTLVPRAVGGRL 241 Query: 241 FSDAMARISFILFVVVAMPIGVHHLFADPQVGAGFKFMHSVFTGLVALPTLLTVFTICAS 300 +SD MARISFILF+VVAMPIG+HHLFADPQVG+GFKF+ SVFT LVA+PTLLTVFTICAS Sbjct: 242 YSDEMARISFILFLVVAMPIGIHHLFADPQVGSGFKFLQSVFTALVAVPTLLTVFTICAS 301 Query: 301 AEIASRLRGGRGAFGWIGALPWSNPIMLATALSLVMLGFGGAGGLINMSYQLDATVHNTQ 360 EIA RLRGG+GAFGWI ALPW P+MLA A S VMLGFGGAGGLINMSYQLD+T+HNTQ Sbjct: 302 VEIAGRLRGGKGAFGWIRALPWHEPMMLAVAFSFVMLGFGGAGGLINMSYQLDSTIHNTQ 361 Query: 361 WITGHFHLIFGGAIVIMYFAIAYDLWPHLTDRALDSFALMRTQLWLWFIGMIVTTFPWHY 420 WITGHFHLIFGGAIVIMYFAIAY+LWP LT R+L S L+R QLW WF+GMIVTTFPWHY Sbjct: 362 WITGHFHLIFGGAIVIMYFAIAYELWPQLTGRSLRSVRLIRWQLWTWFVGMIVTTFPWHY 421 Query: 421 VGILGMPRRMAYYDYANPAISPQALSVTMSAIGGFILLLSGLLFLLVLIRGQFGARGEAG 480 GILGMPRRMA++DY++PAI+P+A++V +S +G IL+ S +LF +VL RG GA A Sbjct: 422 AGILGMPRRMAFFDYSDPAIAPEAITVVLSFVGALILVASAVLFFIVLARGHRGAIEPAR 481 Query: 481 AYRFAVPLHMPARIPVALNSFGLWLALMVGLTVVNYGFPIAQLMALNETSVPAVYVGAGR 540 + F+V +H P +PVALNSFGLW+ALM+GLTVVNYG+PIAQL+AL +TSVPAV++G R Sbjct: 482 RFEFSVAVHPPRTLPVALNSFGLWIALMIGLTVVNYGYPIAQLLALPQTSVPAVWIGGQR 541 >ref|YP_001585717.1| cytochrome c oxidase subunit I [Burkholderia multivorans ATCC 17616] ref|YP_001941565.1| cytochrome c oxidase subunit I [Burkholderia multivorans ATCC 17616] ref|ZP_06846268.1| cytochrome c oxidase subunit I [Burkholderia sp. Ch1-1] gb|ABX19425.1| cytochrome c oxidase subunit I [Burkholderia multivorans ATCC 17616] dbj|BAG47575.1| cytochrome c oxidase subunit I [Burkholderia multivorans ATCC 17616] gb|EFG66105.1| cytochrome c oxidase subunit I [Burkholderia sp. Ch1-1] Length = 541 Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/540 (75%), Positives = 471/540 (87%) Query: 1 LINKRLIAAHFWLAFIVFGVALVLGAWQMFVRSPLNAWHFNPEFYYRSVTAHGSAMGYVF 60 L N+RL+ AHFW AF FGVAL+LGAWQM+VRSPL+AW PE YYRSVTAHGS M YVF Sbjct: 2 LNNRRLVLAHFWFAFATFGVALLLGAWQMYVRSPLHAWLSAPELYYRSVTAHGSVMAYVF 61 Query: 61 PTLIAMGFGYAITEASLEKELVGRRWAWVGFFLVAVGAVVAMIPVSLGLASVLYTFYPPM 120 PTLIAMGFGYAITE SL + LVG+RWAW G++LVAVG++VAM+PVS+G ASVLYTFYPPM Sbjct: 62 PTLIAMGFGYAITELSLAQRLVGKRWAWAGWWLVAVGSIVAMVPVSMGRASVLYTFYPPM 121 Query: 121 VGNPFYYIGVVMVVVGSWIWVALMVTNFVIWKRENPGKPVPLAMYANVAGSLLWGWTAVG 180 +GNPFYYIGVV+VVVGSWIWVALM N +WK+ NPG PVPL M+ANVAGS LW WTAVG Sbjct: 122 IGNPFYYIGVVLVVVGSWIWVALMSVNLHVWKKANPGTPVPLPMFANVAGSYLWAWTAVG 181 Query: 181 AALEILFQILPVALGLKSTIDAGLARVFFSWTLHAIVYFWLIPTYIAYYTIFPRAIGGRL 240 AA+EILFQILPVALGL+STID+GLARVFFSWTLHAIVYFWL+P YIAYYT+ PRA+GGRL Sbjct: 182 AAIEILFQILPVALGLRSTIDSGLARVFFSWTLHAIVYFWLMPAYIAYYTLVPRAVGGRL 241 Query: 241 FSDAMARISFILFVVVAMPIGVHHLFADPQVGAGFKFMHSVFTGLVALPTLLTVFTICAS 300 +SD MARISFILF+VVAMPIG+HHLFADPQVG+GFKF+ SVFT LVA+PTLLTVFTICAS Sbjct: 242 YSDEMARISFILFLVVAMPIGIHHLFADPQVGSGFKFLQSVFTALVAVPTLLTVFTICAS 301 Query: 301 AEIASRLRGGRGAFGWIGALPWSNPIMLATALSLVMLGFGGAGGLINMSYQLDATVHNTQ 360 EIA RLRGG+GAFGWI ALPW P+MLA A S VMLGFGGAGGLINMSYQLD+T+HNTQ Sbjct: 302 VEIAGRLRGGKGAFGWIRALPWHEPMMLAVAFSFVMLGFGGAGGLINMSYQLDSTIHNTQ 361 Query: 361 WITGHFHLIFGGAIVIMYFAIAYDLWPHLTDRALDSFALMRTQLWLWFIGMIVTTFPWHY 420 WITGHFHLIFGGAIVIMYFAIAY+LWP LT R+L S L+R QLW WF+GMIVTTFPWHY Sbjct: 362 WITGHFHLIFGGAIVIMYFAIAYELWPQLTGRSLRSVRLIRWQLWTWFVGMIVTTFPWHY 421 Query: 421 VGILGMPRRMAYYDYANPAISPQALSVTMSAIGGFILLLSGLLFLLVLIRGQFGARGEAG 480 GILGMPRRMA++DY++PAI+P+A++V +S +G IL+ S +LF +VL RG GA A Sbjct: 422 AGILGMPRRMAFFDYSDPAIAPEAITVVLSFVGALILVASAVLFFIVLARGHRGAIEPAR 481 Query: 481 AYRFAVPLHMPARIPVALNSFGLWLALMVGLTVVNYGFPIAQLMALNETSVPAVYVGAGR 540 + F+V +H P +PVALNSFGLW+ALM+GLTVVNYG+PIAQL+AL +TSVPAV++G R Sbjct: 482 RFEFSVAVHPPRTLPVALNSFGLWIALMIGLTVVNYGYPIAQLLALPQTSVPAVWIGGQR 541 >ref|ZP_02462982.1| cytochrome c oxidase, subunit I [Burkholderia thailandensis MSMB43] Length = 541 Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/540 (76%), Positives = 475/540 (87%) Query: 1 LINKRLIAAHFWLAFIVFGVALVLGAWQMFVRSPLNAWHFNPEFYYRSVTAHGSAMGYVF 60 L N RL+ AHFWLAF VFGVAL+LGAWQM RSPL+ W NPE YYRSVTAHGS MGYVF Sbjct: 2 LKNNRLVLAHFWLAFAVFGVALLLGAWQMLARSPLHPWLGNPELYYRSVTAHGSVMGYVF 61 Query: 61 PTLIAMGFGYAITEASLEKELVGRRWAWVGFFLVAVGAVVAMIPVSLGLASVLYTFYPPM 120 PTLIAMGFGYAI+E +L+ LVGRRWAW GF+L+AVG++VAM PVSLGL+SVLYTFYPPM Sbjct: 62 PTLIAMGFGYAISELALKMPLVGRRWAWTGFWLIAVGSIVAMTPVSLGLSSVLYTFYPPM 121 Query: 121 VGNPFYYIGVVMVVVGSWIWVALMVTNFVIWKRENPGKPVPLAMYANVAGSLLWGWTAVG 180 +GNPFYY+GVV+VVVGSWIWVALM N WK+ NPG P+PLAM+ANVAG+ LWGWTAVG Sbjct: 122 IGNPFYYLGVVLVVVGSWIWVALMSVNLYAWKKGNPGTPIPLAMFANVAGAYLWGWTAVG 181 Query: 181 AALEILFQILPVALGLKSTIDAGLARVFFSWTLHAIVYFWLIPTYIAYYTIFPRAIGGRL 240 AA+EILFQILPVA+GL+STIDAGLARVFFSWTLHAIVYFWLIP YIAYYT+ PRAIGG+L Sbjct: 182 AAIEILFQILPVAVGLRSTIDAGLARVFFSWTLHAIVYFWLIPAYIAYYTLVPRAIGGKL 241 Query: 241 FSDAMARISFILFVVVAMPIGVHHLFADPQVGAGFKFMHSVFTGLVALPTLLTVFTICAS 300 +SD MARISFILF+V AMPIGVHHLFADPQVG+GFKF+ SVFT LVA+PTLLTVFT+CAS Sbjct: 242 YSDGMARISFILFLVGAMPIGVHHLFADPQVGSGFKFLQSVFTALVAVPTLLTVFTVCAS 301 Query: 301 AEIASRLRGGRGAFGWIGALPWSNPIMLATALSLVMLGFGGAGGLINMSYQLDATVHNTQ 360 EIA+RLRGG+GAFGW+ ALPW P+MLA A S VMLGFGGAGGLINMSYQLD+T+HNTQ Sbjct: 302 VEIAARLRGGKGAFGWLRALPWHEPMMLAVAFSFVMLGFGGAGGLINMSYQLDSTIHNTQ 361 Query: 361 WITGHFHLIFGGAIVIMYFAIAYDLWPHLTDRALDSFALMRTQLWLWFIGMIVTTFPWHY 420 WITGHFHLIFGGA+VIMYFAIAY+LWPHLT RAL S L++TQLWLWF+GMIVTTFPWHY Sbjct: 362 WITGHFHLIFGGAVVIMYFAIAYELWPHLTGRALGSLRLVKTQLWLWFVGMIVTTFPWHY 421 Query: 421 VGILGMPRRMAYYDYANPAISPQALSVTMSAIGGFILLLSGLLFLLVLIRGQFGARGEAG 480 VGILGMPRRMAYYDY++PA++PQA VTMS +G IL+ S +LF +VLIR GA+ + Sbjct: 422 VGILGMPRRMAYYDYSDPALAPQAAWVTMSVVGALILVASAVLFFVVLIRSHRGAKVKPA 481 Query: 481 AYRFAVPLHMPARIPVALNSFGLWLALMVGLTVVNYGFPIAQLMALNETSVPAVYVGAGR 540 + F+ +H P +PVALNSFGLW+ALM+GLTVVNYG+PIAQLM+L + SVPA+Y+GA R Sbjct: 482 EFTFSSAVHEPKTLPVALNSFGLWIALMIGLTVVNYGYPIAQLMSLKQPSVPAIYMGAQR 541 >ref|YP_001204332.1| putative cytochrome-c oxidase subunit I [Bradyrhizobium sp. ORS 278] emb|CAL76095.1| putative Cytochrome-c oxidase subunit I [Bradyrhizobium sp. ORS 278] Length = 541 Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/540 (74%), Positives = 466/540 (86%) Query: 1 LINKRLIAAHFWLAFIVFGVALVLGAWQMFVRSPLNAWHFNPEFYYRSVTAHGSAMGYVF 60 L N++L+ AHFWLAF VF +AL+LGAWQMF+RSPL+ W +PE+YYRS+TAHG+ M YVF Sbjct: 2 LANRKLVLAHFWLAFGVFSLALLLGAWQMFIRSPLHTWLSDPEWYYRSLTAHGTVMAYVF 61 Query: 61 PTLIAMGFGYAITEASLEKELVGRRWAWVGFFLVAVGAVVAMIPVSLGLASVLYTFYPPM 120 PTL+AMGFGYAI+E++L + L G RWAW GF LVA GAV AMIPVSLG ASVLYTFYPP+ Sbjct: 62 PTLVAMGFGYAISESALSQRLFGARWAWAGFGLVAAGAVTAMIPVSLGRASVLYTFYPPL 121 Query: 121 VGNPFYYIGVVMVVVGSWIWVALMVTNFVIWKRENPGKPVPLAMYANVAGSLLWGWTAVG 180 +G+PFYY+G+V++VVGSWIWVALM N +WK+ NPG+PVPLAM+ANVAG+ LW WTAVG Sbjct: 122 IGSPFYYLGIVLIVVGSWIWVALMAINLRVWKKANPGEPVPLAMFANVAGASLWAWTAVG 181 Query: 181 AALEILFQILPVALGLKSTIDAGLARVFFSWTLHAIVYFWLIPTYIAYYTIFPRAIGGRL 240 AALE+L QI+PVALG KSTIDAGL+R+FFSWTLHAIVYFWLIP+YIAYYTI PRAIGG L Sbjct: 182 AALELLLQIIPVALGFKSTIDAGLSRIFFSWTLHAIVYFWLIPSYIAYYTIVPRAIGGLL 241 Query: 241 FSDAMARISFILFVVVAMPIGVHHLFADPQVGAGFKFMHSVFTGLVALPTLLTVFTICAS 300 +SD MARISFILF+VVAMPIGVHH+FADP VGAGFKF+HS FT LVALPTLLTVFTICAS Sbjct: 242 YSDTMARISFILFLVVAMPIGVHHVFADPMVGAGFKFIHSAFTALVALPTLLTVFTICAS 301 Query: 301 AEIASRLRGGRGAFGWIGALPWSNPIMLATALSLVMLGFGGAGGLINMSYQLDATVHNTQ 360 EIA+RLRGGRG FGW+ ALPW NP+MLA S VMLGFGGAGGLINMSYQLDA++HNTQ Sbjct: 302 VEIAARLRGGRGLFGWVKALPWDNPVMLAATFSFVMLGFGGAGGLINMSYQLDASIHNTQ 361 Query: 361 WITGHFHLIFGGAIVIMYFAIAYDLWPHLTDRALDSFALMRTQLWLWFIGMIVTTFPWHY 420 WITGHFHLIFGGAIVIMYFAIAYDLWPHLT R L LMR QLWLW +GM+VTTFPWHY Sbjct: 362 WITGHFHLIFGGAIVIMYFAIAYDLWPHLTGRPLADVRLMRLQLWLWTVGMVVTTFPWHY 421 Query: 421 VGILGMPRRMAYYDYANPAISPQALSVTMSAIGGFILLLSGLLFLLVLIRGQFGARGEAG 480 VGILGMPRRMAY+D+++PA++P+ALSV +S IG I+L+SG LFL++L RGQ + +AG Sbjct: 422 VGILGMPRRMAYFDFSHPALAPEALSVIISVIGALIILVSGALFLVILARGQRTPKQDAG 481 Query: 481 AYRFAVPLHMPARIPVALNSFGLWLALMVGLTVVNYGFPIAQLMALNETSVPAVYVGAGR 540 AYRF+ LH P R+PV LNS GLW+ALM+ LT+ NYG PI L ++TSVPAVYVGA R Sbjct: 482 AYRFSRALHPPTRLPVVLNSHGLWIALMLVLTITNYGVPILNLAVRSDTSVPAVYVGAQR 541 >ref|ZP_02362348.1| cytochrome c oxidase, subunit I [Burkholderia oklahomensis C6786] Length = 541 Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/540 (76%), Positives = 475/540 (87%) Query: 1 LINKRLIAAHFWLAFIVFGVALVLGAWQMFVRSPLNAWHFNPEFYYRSVTAHGSAMGYVF 60 L N RL+ AHFWLAF VFGVAL+LGAWQM RSPL+ W NPE YYRSVTAHGS MGYVF Sbjct: 2 LKNNRLVLAHFWLAFAVFGVALLLGAWQMLARSPLHPWLGNPELYYRSVTAHGSVMGYVF 61 Query: 61 PTLIAMGFGYAITEASLEKELVGRRWAWVGFFLVAVGAVVAMIPVSLGLASVLYTFYPPM 120 PTLIAMGFGYAI+E +L+ LVGRRWAW GF+L+A+G+VVAM PVSLGL+SVLYTFYPPM Sbjct: 62 PTLIAMGFGYAISELALKMPLVGRRWAWTGFWLIALGSVVAMTPVSLGLSSVLYTFYPPM 121 Query: 121 VGNPFYYIGVVMVVVGSWIWVALMVTNFVIWKRENPGKPVPLAMYANVAGSLLWGWTAVG 180 +G+PFYY+GVV+VVVGSWIWVALM N WK+ NPG P+PLAM+ANVAG+ LWGWTAVG Sbjct: 122 IGSPFYYLGVVLVVVGSWIWVALMSVNLYAWKKANPGAPIPLAMFANVAGAYLWGWTAVG 181 Query: 181 AALEILFQILPVALGLKSTIDAGLARVFFSWTLHAIVYFWLIPTYIAYYTIFPRAIGGRL 240 AA+EILFQILPVALGLKSTIDAGLARVFFSWTLHAIVYFWLIP YIAYYT+ PRAIGG+L Sbjct: 182 AAIEILFQILPVALGLKSTIDAGLARVFFSWTLHAIVYFWLIPAYIAYYTLVPRAIGGKL 241 Query: 241 FSDAMARISFILFVVVAMPIGVHHLFADPQVGAGFKFMHSVFTGLVALPTLLTVFTICAS 300 +SD MARISFILF+V AMPIG+HHLFADPQVG+GFKF+ SVFT LVA+PTLLTVFT+CAS Sbjct: 242 YSDGMARISFILFLVGAMPIGIHHLFADPQVGSGFKFLQSVFTALVAVPTLLTVFTVCAS 301 Query: 301 AEIASRLRGGRGAFGWIGALPWSNPIMLATALSLVMLGFGGAGGLINMSYQLDATVHNTQ 360 EIA+RLRGG+GAFGW+ ALPW P+MLA A S VMLGFGGAGGLINMSYQLD+T+HNTQ Sbjct: 302 VEIAARLRGGKGAFGWLRALPWHEPMMLAVAFSFVMLGFGGAGGLINMSYQLDSTIHNTQ 361 Query: 361 WITGHFHLIFGGAIVIMYFAIAYDLWPHLTDRALDSFALMRTQLWLWFIGMIVTTFPWHY 420 WITGHFHLIFGGA+VIMYFAIAY+LWPHLT RAL S L++TQLWLWF+GMIVTTFPWHY Sbjct: 362 WITGHFHLIFGGAVVIMYFAIAYELWPHLTGRALGSARLVKTQLWLWFVGMIVTTFPWHY 421 Query: 421 VGILGMPRRMAYYDYANPAISPQALSVTMSAIGGFILLLSGLLFLLVLIRGQFGARGEAG 480 VGILGMPRRMAYYDY++PA++PQA+ V MS +G IL+ S +LF +VLIR GA+ + Sbjct: 422 VGILGMPRRMAYYDYSDPALAPQAIWVIMSVVGALILVASAVLFFVVLIRSHRGAKVKPA 481 Query: 481 AYRFAVPLHMPARIPVALNSFGLWLALMVGLTVVNYGFPIAQLMALNETSVPAVYVGAGR 540 + F+ +H P +PVALNSFGLW+ALM+GLTVVNYG+PIAQLMAL + SVPA+Y+GA R Sbjct: 482 EFTFSSAVHEPKTLPVALNSFGLWVALMIGLTVVNYGYPIAQLMALKQPSVPAIYMGAQR 541